Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 1.1e-150 536.6 273 100.0
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 6.3e-85 318.2 227 79.3
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 8.3e-85 317.8 223 79.8
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 4.3e-41 172.6 123 78.0
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 7.4e-25 118.6 187 43.9
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 7.1e-20 102.1 186 38.2
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 1.2e-19 101.3 188 38.3
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 2.1e-19 100.5 186 37.6
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 2.7e-19 100.1 186 37.1
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 1.0e-18 98.2 187 36.4
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 1.0e-18 98.2 187 36.4
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 1.3e-18 97.8 187 36.9
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 3.0e-18 96.7 186 38.7
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 3.9e-18 96.3 189 37.6
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 3.9e-18 96.3 187 34.2
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 5.1e-18 95.9 187 37.4
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 6.7e-18 95.5 185 35.7
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 6.7e-18 95.5 189 37.0
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 8.7e-18 95.1 186 36.6
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.1e-17 94.7 185 35.7
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 1.9e-17 94.0 186 36.0
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.9e-17 94.0 185 35.1
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 1.9e-17 94.0 189 37.0
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 2.5e-17 93.6 187 35.3
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 2.5e-17 93.6 187 35.3
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 3.3e-17 93.2 187 36.4
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 3.3e-17 93.2 187 36.4
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 5.7e-17 92.4 187 34.8
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 5.7e-17 92.4 186 36.0
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 5.7e-17 92.4 187 36.4
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 5.7e-17 92.4 186 36.6
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 9.6e-17 91.7 186 34.9
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 9.6e-17 91.7 187 34.2
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 1.3e-16 91.3 186 34.9
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 1.6e-16 90.9 187 33.2
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 2.1e-16 90.5 187 33.7
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 2.8e-16 90.1 187 35.8
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 3.7e-16 89.7 186 35.5
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 6.2e-16 89.0 187 33.7
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 6.2e-16 89.0 187 35.3
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.1e-15 88.2 188 33.5
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 1.1e-15 88.2 187 34.2
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.4e-15 87.8 195 32.3
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 1.8e-15 87.4 187 34.8
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 3.1e-15 86.7 186 34.9
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 4.1e-15 86.3 186 34.4
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 4.1e-15 86.3 187 33.2
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 4.1e-15 86.3 187 36.4
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 5.3e-15 85.9 187 34.8
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 6.9e-15 85.5 186 32.3
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 9.0e-15 85.1 186 33.3
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 9.0e-15 85.1 185 34.1
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 1.2e-14 84.7 186 31.7
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 1.2e-14 84.7 180 32.8
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-14 84.3 188 34.0
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-14 84.3 188 34.0
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-14 84.3 188 34.0
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.5e-14 84.3 188 34.0
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.5e-14 84.3 186 35.5
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 1.5e-14 84.3 185 34.1
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 2.0e-14 84.0 186 33.3
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 2.6e-14 83.6 186 33.3
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 3.4e-14 83.2 186 32.8
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 3.4e-14 83.2 186 32.3
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 7.6e-14 82.0 188 33.5
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 7.6e-14 82.0 192 32.3
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 1.3e-13 81.3 169 34.3
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.7e-13 80.9 186 34.4
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.7e-13 80.9 186 34.4
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.7e-13 80.9 186 33.9
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 2.2e-13 80.5 188 33.5
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 2.9e-13 80.1 175 33.1
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 3.8e-13 79.7 188 33.0
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 5.0e-13 79.3 186 32.8
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 5.0e-13 79.3 191 30.9
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 6.5e-13 79.0 188 33.0
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 6.5e-13 79.0 188 31.4
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.4e-12 77.8 188 33.0
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 1.4e-12 77.8 125 40.0
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 1.9e-12 77.4 192 32.3
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.5e-12 77.0 206 31.1
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 2.5e-12 77.0 206 31.1
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 5.5e-12 75.9 187 30.5
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 7.1e-12 75.5 185 30.8
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.2e-11 74.7 186 30.1
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.2e-11 74.7 186 30.1
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 1.2e-11 74.7 186 30.1
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 1.6e-11 74.3 188 32.4
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 2.7e-11 73.6 186 29.0
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 4.6e-11 72.8 118 44.1
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 4.6e-11 72.8 171 31.6
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.8e-10 70.9 210 31.0
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 1.8e-10 70.9 186 29.0
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 1.8e-10 70.9 186 29.0
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.8e-10 70.9 188 29.3
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 2.3e-10 70.5 186 30.1
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 2.3e-10 70.5 186 29.6
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 3.9e-10 69.7 186 30.1
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 3.9e-10 69.7 186 28.5
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 3.9e-10 69.7 186 28.5
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 3.9e-10 69.7 186 28.5
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 5.1e-10 69.3 186 29.0
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 8.7e-10 68.6 186 29.0
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 8.7e-10 68.6 186 28.5
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-09 68.2 183 30.6
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 2.5e-09 67.0 188 29.8
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 7.4e-09 65.5 188 29.8
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 9.7e-09 65.1 186 25.8
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.4e-07 61.2 186 29.0
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 1.4e-07 61.2 63 47.6
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 2.4e-07 60.5 64 50.0
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 1.2e-06 58.2 64 46.9
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 1.5e-06 57.8 63 42.9
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 1.5e-06 57.8 186 27.4
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 3.4e-06 56.6 40 67.5
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 4.5e-06 56.2 40 65.0
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 4.5e-06 56.2 40 65.0
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 5.9e-06 55.8 113 33.6
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 7.7e-06 55.5 64 43.8
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.7e-06 55.5 64 43.8
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.7e-06 55.5 64 43.8
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.7e-06 55.5 64 43.8
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.7e-06 55.5 64 43.8


User provided reference genes

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