Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 4.0e-293 1010.7 533 100.0
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 2.0e-239 832.4 527 84.6
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 4.8e-238 827.8 525 84.8
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 1.3e-235 819.7 527 84.1
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.2e-233 813.1 527 82.2
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 6.1e-233 810.8 545 81.5
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 1.5e-231 806.2 527 82.7
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 2.0e-231 805.8 525 82.9
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 5.7e-231 804.3 527 83.3
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 2.2e-230 802.4 527 82.7
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.4e-229 799.7 525 82.5
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 1.8e-229 799.3 524 83.8
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 2.4e-229 798.9 525 81.9
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.3e-227 793.1 524 82.4
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 8.5e-227 790.4 527 81.6
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 2.5e-226 788.9 527 81.4
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.6e-225 786.2 527 80.8
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 2.7e-225 785.4 527 81.0
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 4.7e-225 784.6 527 81.0
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 1.4e-224 783.1 527 80.8
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 1.4e-224 783.1 533 79.5
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 1.4e-224 783.1 527 80.8
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 2.3e-224 782.3 527 81.8
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 1.1e-223 780.0 527 80.3
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.1e-223 780.0 527 80.3
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 1.5e-223 779.6 526 80.2
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 2.6e-223 778.9 550 77.6
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.6e-223 778.9 525 80.8
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.3e-222 776.5 527 80.1
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 1.3e-222 776.5 533 78.8
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.3e-222 776.5 527 81.2
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 2.2e-222 775.8 527 80.6
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 6.3e-222 774.2 527 80.5
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 2.4e-221 772.3 527 79.9
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 4.1e-221 771.5 527 80.1
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 2.6e-220 768.8 527 79.3
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 4.5e-220 768.1 527 79.9
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 5.9e-220 767.7 525 79.4
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 1.0e-219 766.9 527 80.1
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 1.3e-219 766.5 527 78.4
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.3e-219 766.5 555 76.4
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.7e-219 766.1 525 79.6
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 1.7e-219 766.1 527 78.0
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 3.8e-219 765.0 527 77.2
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 6.5e-219 764.2 527 78.9
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 1.5e-218 763.1 533 75.6
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 1.5e-218 763.1 527 78.9
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.9e-218 762.7 527 77.2
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 4.2e-218 761.5 525 79.4
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 5.5e-218 761.1 528 78.2
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 7.2e-218 760.8 527 78.7
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 9.4e-218 760.4 527 78.2
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.6e-217 759.6 527 77.0
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 2.1e-217 759.2 527 78.0
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 2.7e-217 758.8 527 78.6
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 6.1e-217 757.7 527 79.1
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 8.0e-217 757.3 527 78.0
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 8.0e-217 757.3 527 76.3
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 4.0e-216 755.0 527 78.2
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 5.2e-216 754.6 527 78.2
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 5.2e-216 754.6 527 77.2
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 6.7e-216 754.2 527 78.7
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 8.8e-216 753.8 527 78.0
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 2.0e-215 752.7 527 73.1
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 3.3e-215 751.9 533 76.7
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 4.4e-215 751.5 533 76.7
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 7.5e-215 750.7 527 78.0
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 9.7e-215 750.4 527 78.6
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 1.7e-214 749.6 527 78.0
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 2.8e-214 748.8 527 76.3
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 1.8e-213 746.1 527 75.3
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 3.1e-213 745.3 527 77.0
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 3.5e-212 741.9 527 77.4
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 5.9e-212 741.1 527 75.1
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 1.0e-211 740.3 533 76.7
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 3.8e-211 738.4 527 77.0
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 3.8e-211 738.4 527 77.4
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 8.5e-211 737.3 533 74.9
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 1.9e-210 736.1 527 78.0
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 2.5e-210 735.7 533 76.0
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 5.5e-210 734.6 533 74.5
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 5.5e-210 734.6 505 79.4
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 2.1e-209 732.6 531 75.9
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 2.1e-209 732.6 531 75.9
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 4.7e-209 731.5 533 75.6
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 6.1e-209 731.1 527 75.9
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 8.0e-209 730.7 527 75.7
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 3.0e-208 728.8 528 74.6
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 1.2e-207 726.9 549 74.1
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 7.5e-207 724.2 527 75.5
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 9.8e-207 723.8 537 73.6
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 6.3e-206 721.1 520 73.5
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 7.7e-204 714.1 527 75.1
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.5e-202 709.9 523 75.7
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 2.8e-201 705.7 504 77.8
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 4.0e-200 701.8 527 71.5
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 2.5e-194 682.6 533 71.7
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 1.5e-191 673.3 527 67.2
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 2.0e-191 672.9 548 67.5
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 2.6e-191 672.5 570 65.4
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 5.8e-191 671.4 527 68.9
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 4.1e-189 665.2 481 78.0
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 7.0e-189 664.5 477 78.2
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 3.9e-187 658.7 538 69.5
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 5.0e-187 658.3 527 67.6
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 1.8e-184 649.8 533 61.0
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.9e-182 641.7 527 70.2
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 1.2e-180 637.1 455 74.5
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 6.4e-174 614.8 450 75.8
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 3.2e-173 612.5 448 74.3
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 3.8e-158 562.4 533 62.5
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 6.6e-155 551.6 424 71.9
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 1.4e-149 533.9 289 90.3
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 2.4e-149 533.1 526 57.4
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.9e-138 496.9 342 79.5
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 5.3e-128 462.2 247 92.3
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 6.7e-123 445.3 398 62.3
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 4.3e-122 442.6 345 68.4
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 5.0e-102 375.9 203 93.1
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 5.0e-102 375.9 203 93.1
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.4e-90 336.3 277 72.9
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 1.1e-88 331.6 385 57.7
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 2.1e-84 317.4 206 86.4
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 2.1e-68 264.2 539 38.0
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 5.6e-61 239.6 338 50.3
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 6.8e-59 232.6 127 93.7
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 2.0e-58 231.1 532 34.0
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 1.5e-45 188.3 99 84.8
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.8e-43 181.4 150 64.0
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.7e-41 174.9 315 34.3
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 2.2e-41 174.5 120 74.2
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 2.2e-41 174.5 120 74.2
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 5.6e-37 159.8 80 90.0
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 5.5e-32 143.3 107 72.0
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 9.3e-32 142.5 137 60.6
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.9e-29 134.8 90 77.8
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 2.8e-28 131.0 173 48.6
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 1.8e-27 128.3 154 68.2
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 5.3e-27 126.7 70 85.7
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 1.0e-25 122.5 70 82.9
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 3.2e-24 117.5 64 82.8
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 3.2e-24 117.5 64 82.8
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.2e-24 117.1 271 32.8
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 2.1e-20 104.8 56 82.1
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 6.3e-20 103.2 52 88.5
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 5.3e-19 100.1 56 76.8
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 1.9e-16 91.7 46 84.8
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.5e-16 91.3 48 93.8
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 3.5e-15 87.4 46 80.4
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 4.1e-11 73.9 36 86.1
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 5.3e-11 73.6 105 42.9
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 1.7e-09 68.6 201 30.8
Gohir.D08G022700 Gossypium hirsutum HOM05D001715 ORTHO05D003849 2.2e-09 68.2 235 27.2
AUR62025425 Chenopodium quinoa HOM05D006183 ORTHO05D007844 7.9e-07 59.7 172 29.1
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 7.9e-07 59.7 298 21.5
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 1.0e-06 59.3 29 82.8
Glyma.15G193000 Glycine max HOM05D004669 ORTHO05D005767 1.4e-06 58.9 166 28.3
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 1.4e-06 58.9 159 28.9
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 1.8e-06 58.5 35 71.4
Cpa.g.sc10.221 Carica papaya HOM05D004669 ORTHO05D005767 1.8e-06 58.5 166 28.3
AUR62008815 Chenopodium quinoa HOM05D006183 ORTHO05D007844 5.1e-06 57.0 172 28.5
Prupe.1G326100 Prunus persica HOM05D000992 ORTHO05D001928 6.7e-06 56.6 157 29.3
Sc17g0002990 Simmondsia chinensis HOM05D006183 ORTHO05D007844 6.7e-06 56.6 172 27.9


User provided reference genes

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