Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 1.3e-296 1022.3 526 100.0
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 4.8e-182 641.7 530 66.0
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 6.1e-177 624.8 540 64.4
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 3.0e-168 595.9 494 67.0
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 2.2e-166 589.7 531 63.1
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.2e-159 567.4 532 60.0
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 5.7e-159 565.1 524 59.7
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 2.3e-155 553.1 533 58.3
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 7.2e-154 548.1 530 58.9
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 1.2e-153 547.4 538 56.5
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 1.6e-153 547.0 537 57.9
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 2.8e-153 546.2 529 57.3
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 1.5e-151 540.4 542 56.6
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 1.5e-151 540.4 542 56.6
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 1.5e-151 540.4 535 57.0
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 5.7e-151 538.5 540 56.7
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 7.5e-151 538.1 540 56.3
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 3.7e-150 535.8 542 55.9
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 8.3e-150 534.6 535 56.4
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 1.1e-149 534.3 538 55.9
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.8e-149 533.5 537 57.4
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.2e-149 532.7 537 57.5
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 4.1e-149 532.3 542 55.7
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 4.1e-149 532.3 538 55.9
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 5.4e-149 531.9 535 57.0
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 7.0e-149 531.6 537 57.5
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 7.0e-149 531.6 535 56.1
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 9.2e-149 531.2 539 55.8
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 2.0e-148 530.0 534 55.8
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.0e-148 530.0 537 57.0
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 2.0e-148 530.0 542 55.0
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 2.7e-148 529.6 564 55.3
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 5.9e-148 528.5 536 55.6
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 7.8e-148 528.1 539 55.7
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 7.8e-148 528.1 542 56.6
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 1.3e-147 527.3 538 55.8
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 6.6e-147 525.0 536 56.9
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 8.6e-147 524.6 537 56.4
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 1.5e-146 523.9 532 55.6
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 5.6e-146 521.9 541 55.3
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 7.3e-146 521.5 530 55.1
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 7.3e-146 521.5 539 56.0
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.2e-145 520.8 537 56.2
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.8e-145 519.6 535 55.5
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 6.2e-145 518.5 534 55.1
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.8e-144 516.9 535 55.3
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 5.2e-144 515.4 545 56.1
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 1.5e-143 513.8 531 54.6
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 3.4e-143 512.7 530 55.7
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 9.8e-143 511.1 541 53.6
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.4e-141 507.3 537 54.6
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 4.1e-141 505.8 542 54.6
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 2.7e-140 503.1 536 53.4
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 3.5e-140 502.7 535 54.8
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.7e-139 500.4 535 54.4
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 3.9e-139 499.2 531 53.7
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 5.0e-139 498.8 525 53.9
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.1e-138 497.7 535 54.8
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 3.3e-138 496.1 538 53.7
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 7.3e-138 495.0 536 52.1
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 1.6e-137 493.8 499 56.7
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 8.1e-137 491.5 528 54.0
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 3.1e-136 489.6 534 53.7
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 2.0e-135 486.9 530 53.0
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 2.0e-135 486.9 533 55.5
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 1.3e-134 484.2 537 54.0
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 1.3e-134 484.2 532 54.1
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.3e-134 484.2 532 54.9
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 2.9e-134 483.0 546 52.4
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 4.9e-134 482.3 532 52.8
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 8.3e-134 481.5 540 53.9
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 4.1e-133 479.2 526 54.4
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 7.1e-133 478.4 532 54.3
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 7.1e-133 478.4 531 54.2
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 2.1e-132 476.9 532 52.3
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 3.5e-132 476.1 532 53.9
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 2.3e-131 473.4 536 53.0
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 3.3e-130 469.5 534 52.8
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 4.3e-130 469.2 532 52.8
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 4.3e-130 469.2 531 53.3
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 4.3e-130 469.2 530 53.4
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 9.5e-130 468.0 510 52.7
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 2.1e-129 466.8 531 53.1
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 3.6e-129 466.1 531 52.7
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 6.8e-128 461.8 525 50.7
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 3.3e-122 443.0 491 52.1
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 9.6e-122 441.4 534 51.3
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 2.0e-119 433.7 534 50.2
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 3.4e-119 433.0 544 49.8
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.9e-117 427.2 531 47.6
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 1.9e-114 417.2 438 54.6
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 1.1e-112 411.4 532 46.1
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 4.4e-111 406.0 543 47.0
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 2.2e-110 403.7 529 47.4
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 1.1e-109 401.4 529 46.7
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 1.2e-108 397.9 537 46.9
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 2.7e-108 396.7 455 51.0
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 7.6e-103 378.6 537 43.0
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 8.4e-102 375.2 531 45.6
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 2.3e-99 367.1 354 58.5
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 2.5e-98 363.6 540 40.4
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 6.2e-97 359.0 341 59.2
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 2.4e-96 357.1 538 44.2
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 6.9e-96 355.5 414 51.7
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.0e-95 354.0 511 42.7
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 4.9e-94 349.4 353 56.7
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 3.3e-90 336.7 340 56.8
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.0e-86 325.1 285 63.5
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 2.2e-86 323.9 331 56.5
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 1.2e-84 318.2 318 60.1
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 7.4e-82 308.9 519 40.7
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 1.4e-77 294.7 319 52.0
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 4.2e-77 293.1 599 35.2
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.6e-76 291.2 408 46.6
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 3.1e-72 276.9 305 53.1
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 4.5e-71 273.1 441 41.7
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.9e-69 267.7 314 48.1
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 3.1e-64 250.4 184 71.7
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 7.0e-64 249.2 209 61.7
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 6.1e-60 236.1 155 73.5
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 2.8e-49 200.7 356 39.9
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 1.0e-46 192.2 204 53.9
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.3e-46 191.8 140 66.4
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 4.2e-45 186.8 284 43.3
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 2.7e-44 184.1 498 30.5
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 6.3e-41 172.9 538 28.3
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 1.6e-36 158.3 381 33.3
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 4.4e-34 150.2 170 51.8
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 4.9e-33 146.7 175 49.1
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 1.8e-32 144.8 154 53.2
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 1.8e-32 144.8 74 90.5
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 1.9e-29 134.8 355 30.4
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 4.7e-28 130.2 92 70.7
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 4.6e-23 113.6 80 72.5
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 3.6e-20 104.0 154 41.6
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 8.1e-20 102.8 98 57.1
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 9.8e-18 95.9 73 67.1
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 9.2e-16 89.4 69 69.6
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 9.5e-13 79.3 156 31.4
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.1e-11 74.3 62 59.7
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 6.8e-11 73.2 254 28.7
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 1.2e-10 72.4 81 54.3
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 3.4e-10 70.9 120 39.2
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.1e-08 65.9 54 59.3
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 3.9e-06 57.4 37 78.4
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.9e-06 57.4 62 51.6
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 6.6e-06 56.6 72 44.4


User provided reference genes

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