Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05379 Striga asiatica HOM05D000216 ORTHO05D000634 2.9e-108 395.2 192 100.0
Migut.D01343 Erythranthe guttata HOM05D000216 ORTHO05D000634 3.7e-31 139.0 144 56.9
BolSC37t60766H Brassica oleracea HOM05D000216 ORTHO05D000634 2.1e-26 123.2 164 46.3
BolSC45t60875H Brassica oleracea HOM05D000216 ORTHO05D000634 2.1e-26 123.2 164 46.3
BraSC151t45702Z Brassica rapa HOM05D000216 ORTHO05D000634 2.1e-26 123.2 164 46.3
BraSC58t46407Z Brassica rapa HOM05D000216 ORTHO05D000634 2.1e-26 123.2 164 46.3
Sed0025165 Sechium edule HOM05D000216 ORTHO05D000634 4.7e-26 122.1 131 52.7
CARHR281930 Cardamine hirsuta HOM05D000216 ORTHO05D001131 8.0e-26 121.3 144 50.7
ATCG00180 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 1.0e-25 120.9 144 50.7
BNapus_Darmor_BZH_scaffold_253p00070 Brassica napus HOM05D000216 ORTHO05D000634 1.4e-25 120.6 144 50.0
Sed0020606 Sechium edule HOM05D000216 ORTHO05D000634 1.4e-25 120.6 134 52.2
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 4.0e-25 119.0 144 49.3
Potri.013G140850 Populus trichocarpa HOM05D000216 ORTHO05D000634 8.8e-25 117.9 144 49.3
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 8.8e-25 117.9 144 49.3
PGR111G0082 Punica granatum HOM05D000216 ORTHO05D000634 1.2e-24 117.5 144 50.0
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.6e-24 116.3 148 47.3
DCAR_032475 Daucus carota HOM05D000216 ORTHO05D000634 2.6e-24 116.3 144 47.9
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 3.4e-24 115.9 146 50.0
BolSC44t60848H Brassica oleracea HOM05D000216 ORTHO05D000634 3.4e-24 115.9 157 45.2
BolSC45t60939H Brassica oleracea HOM05D000216 ORTHO05D000634 3.4e-24 115.9 157 45.2
COL.COLO4_37398 Corchorus olitorius HOM05D000216 ORTHO05D000634 3.4e-24 115.9 142 47.9
Sed0024913 Sechium edule HOM05D000216 ORTHO05D000634 4.4e-24 115.5 133 51.1
arahy.Tifrunner.gnm1.ann1.YJD706 Arachis hypogaea HOM05D000216 ORTHO05D000634 7.5e-24 114.8 146 49.3
LjContig00318g0019842 Lotus japonicus HOM05D000216 ORTHO05D000634 7.5e-24 114.8 146 51.4
Psat0s6357g0040 Pisum sativum HOM05D000216 ORTHO05D001131 7.5e-24 114.8 165 46.1
Gorai.005G167800 Gossypium raimondii HOM05D000216 ORTHO05D000634 9.8e-24 114.4 143 47.6
Hund27655 Selenicereus undatus HOM05D000216 ORTHO05D000634 9.8e-24 114.4 144 47.9
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 9.8e-24 114.4 144 47.9
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 1.7e-23 113.6 143 47.6
ATR0187G002 Amborella trichopoda HOM05D000216 ORTHO05D000634 3.7e-23 112.5 143 48.3
Hma1.2p1_0094F.1_g047102 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 4.8e-23 112.1 144 47.9
CAN.G219.18 Capsicum annuum HOM05D000216 ORTHO05D000634 6.3e-23 111.7 144 47.9
FAN07G2613 Fragaria x ananassa HOM05D000216 ORTHO05D000634 3.1e-22 109.4 144 47.2
PSO548G0054 Papaver somniferum HOM05D000216 ORTHO05D000634 4.1e-22 109.0 144 45.1
Medtr3g062770 Medicago truncatula HOM05D000216 ORTHO05D000634 7.0e-22 108.2 170 44.1
Medtr3g062790 Medicago truncatula HOM05D000216 ORTHO05D000634 7.0e-22 108.2 170 44.1
Medtr4g051130 Medicago truncatula HOM05D000216 ORTHO05D001131 7.0e-22 108.2 170 44.1
CsaV3_UNG208340 Cucumis sativus L. HOM05D000216 ORTHO05D001131 2.7e-21 106.3 93 60.2
Lsat_1_v5_gn_1_96161 Lactuca sativa HOM05D000216 ORTHO05D000634 1.1e-19 100.9 144 45.1
Lsat_1_v5_gn_8_1820 Lactuca sativa HOM05D000216 ORTHO05D000634 1.1e-19 100.9 144 45.1
HanXRQChr00c0823g0577611 Helianthus annuus HOM05D000216 ORTHO05D000634 5.5e-19 98.6 144 43.8
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 5.5e-19 98.6 144 43.8
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 5.5e-19 98.6 144 43.8
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 5.5e-19 98.6 144 43.8
HanXRQChr13g0417241 Helianthus annuus HOM05D000216 ORTHO05D001131 2.1e-18 96.7 175 38.9
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 8.9e-17 91.3 144 41.0
HanXRQChr00c0994g0578181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-16 90.9 134 46.3
Lalb_Chr06g0173041 Lupinus albus HOM05D000216 ORTHO05D000634 2.0e-16 90.1 136 45.6
EL10Ac9g21013 Beta vulgaris HOM05D000216 ORTHO05D000634 3.1e-14 82.8 63 65.1
Hund27561 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.1e-14 82.4 47 78.7
Hund27997 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.1e-14 82.4 47 78.7
Hund28278 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.1e-14 82.4 47 78.7
Hund28351 Selenicereus undatus HOM05D000216 ORTHO05D001131 4.1e-14 82.4 47 78.7
Hund28386 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.1e-14 82.4 47 78.7
Hund28558 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.1e-14 82.4 47 78.7
Hund29353 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.1e-14 82.4 47 78.7
Hund29739 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.1e-14 82.4 47 78.7
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.1e-14 82.4 47 78.7
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.1e-14 82.4 47 78.7
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.1e-14 82.4 47 78.7
QL93p1429_0001 Quercus lobata HOM05D000216 ORTHO05D000634 5.4e-14 82.0 47 78.7
Ca_05612_v3 Cicer arietinum L. HOM05D000216 ORTHO05D000634 7.0e-14 81.6 47 78.7
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 9.2e-14 81.3 47 78.7
AL2G20940 Arabidopsis lyrata HOM05D000216 ORTHO05D000634 3.5e-13 79.3 45 80.0
BraSC58t46478Z Brassica rapa HOM05D000216 ORTHO05D000634 3.5e-13 79.3 45 80.0
LjContig00489g0016986 Lotus japonicus HOM05D000216 ORTHO05D000634 5.9e-13 78.6 120 44.2
Lalb_Chr09g0335381 Lupinus albus HOM05D000216 ORTHO05D000634 7.8e-13 78.2 45 77.8
Lalb_Chr24g0400941 Lupinus albus HOM05D000216 ORTHO05D000634 7.8e-13 78.2 45 77.8
Psat7g026760 Pisum sativum HOM05D000216 ORTHO05D000634 7.8e-13 78.2 47 76.6
unitig_91.g26497 Utricularia gibba HOM05D000216 ORTHO05D000634 7.8e-13 78.2 45 77.8
AUR62024083 Chenopodium quinoa HOM05D000216 ORTHO05D001131 1.7e-12 77.0 47 72.3
Psat5g263640 Pisum sativum HOM05D000216 ORTHO05D000634 1.7e-12 77.0 47 76.6
Medtr8g016510 Medicago truncatula HOM05D000216 ORTHO05D000634 2.9e-12 76.3 47 74.5
Lalb_Chr07g0192751 Lupinus albus HOM05D000216 ORTHO05D000634 5.0e-12 75.5 45 75.6
Psat0s1150g0080 Pisum sativum HOM05D000216 ORTHO05D000634 5.0e-12 75.5 145 40.0
ECA054G0005 Erigeron canadensis HOM05D000216 ORTHO05D000634 6.6e-12 75.1 47 70.2
ECA169G0008 Erigeron canadensis HOM05D000216 ORTHO05D000634 6.6e-12 75.1 47 70.2
Medtr7g067760 Medicago truncatula HOM05D000216 ORTHO05D000634 6.6e-12 75.1 47 70.2
Psat0s4841g0120 Pisum sativum HOM05D000216 ORTHO05D000634 1.5e-11 73.9 43 79.1
Psat7g064880 Pisum sativum HOM05D000216 ORTHO05D000634 1.5e-11 73.9 45 73.3
Lalb_Chr06g0173131 Lupinus albus HOM05D000216 ORTHO05D000634 1.9e-11 73.6 45 75.6
Hund28576 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.5e-11 73.2 47 72.3
HanXRQChr15g0488301 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-10 70.5 47 68.1
Lsat_1_v5_gn_2_41761 Lactuca sativa HOM05D000216 ORTHO05D000634 1.6e-10 70.5 47 68.1
Lsat_1_v5_gn_6_87861 Lactuca sativa HOM05D000216 ORTHO05D000634 1.6e-10 70.5 47 68.1
Lj2A1227T105 Lonicera japonica HOM05D000216 ORTHO05D000634 1.6e-10 70.5 47 63.8
Lj2A1237T129 Lonicera japonica HOM05D000216 ORTHO05D000634 1.6e-10 70.5 47 63.8
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 1.6e-10 70.5 47 63.8
Lj2C1239T55 Lonicera japonica HOM05D000216 ORTHO05D000634 1.6e-10 70.5 47 63.8
Lsat_1_v5_gn_8_77281 Lactuca sativa HOM05D000216 ORTHO05D000634 8.0e-10 68.2 47 63.8
Medtr4g009210 Medicago truncatula HOM05D000216 ORTHO05D000634 1.0e-09 67.8 45 71.1
Nitab4.5_0003222g0030 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.0e-09 67.8 38 76.3
Lj2C1224G59 Lonicera japonica HOM05D000216 ORTHO05D000634 1.8e-09 67.0 45 62.2
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 1.8e-09 67.0 45 62.2
Lju2566C0G7 Lonicera japonica HOM05D000216 ORTHO05D000634 1.8e-09 67.0 43 67.4
Psat6g181520 Pisum sativum HOM05D000216 ORTHO05D000634 2.3e-09 66.6 45 68.9
BolC7t41733H Brassica oleracea HOM05D000216 ORTHO05D000634 4.0e-09 65.9 108 39.8
Solyc07g021210.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.2e-09 65.5 44 63.6
CAN.G802.5 Capsicum annuum HOM05D001109 ORTHO05D001051 8.9e-09 64.7 33 78.8
Nitab4.5_0002734g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.9e-09 64.7 39 71.8
Gorai.001G177800 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.2e-08 64.3 33 81.8
Nitab4.5_0003222g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.2e-08 64.3 38 73.7
SEGI_00207 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.2e-08 64.3 45 57.8
arahy.Tifrunner.gnm1.ann1.Q9IK60 Arachis hypogaea HOM05D000216 ORTHO05D014073 2.0e-08 63.5 32 84.4
Gohir.D07G155233 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.0e-08 63.5 33 81.8
SEGI_19449 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.3e-07 60.8 40 60.0
Nitab4.5_0000172g0250 Nicotiana tabacum HOM05D000216 ORTHO05D001131 2.9e-07 59.7 120 38.3
Hund21335 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.9e-07 58.9 35 77.1
BraSC140t45586Z Brassica rapa HOM05D000216 ORTHO05D000634 1.1e-06 57.8 116 37.9
DCAR_010534 Daucus carota HOM05D000216 ORTHO05D000634 5.4e-06 55.5 30 83.3
BraSC140t45607Z Brassica rapa HOM05D000216 ORTHO05D000634 9.2e-06 54.7 30 83.3


User provided reference genes

Program Settings