Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold108G30932 Striga asiatica HOM05D000688 ORTHO05D051376 2.8e-166 588.6 302 100.0
SGA_v2.0_scaffold205G41799 Striga asiatica HOM05D000688 ORTHO05D051376 4.4e-103 378.6 398 58.8
SGA_v2.0_scaffold169G38607 Striga asiatica HOM05D000688 ORTHO05D004737 4.6e-68 262.3 227 66.1
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 1.7e-59 233.8 227 58.1
MSTRG.1633 Avicennia marina HOM05D000688 ORTHO05D004737 9.9e-55 218.0 227 54.2
Migut.E01463 Erythranthe guttata HOM05D000688 ORTHO05D004737 5.1e-51 205.7 227 51.1
SalBow6G0619 Salvia bowleyana HOM05D000688 ORTHO05D004737 1.6e-49 200.7 233 49.8
SalBow6G4737 Salvia bowleyana HOM05D000688 ORTHO05D004737 1.6e-49 200.7 233 49.8
Oeu019307.1 Olea europaea HOM05D000688 ORTHO05D004737 5.2e-48 195.7 227 48.9
Actinidia10520 Actinidia chinensis HOM05D000688 ORTHO05D004737 2.9e-46 189.9 228 49.6
Dinv03974 Davidia involucrata HOM05D000688 ORTHO05D004737 3.8e-46 189.5 229 47.2
Dinv40966 Davidia involucrata HOM05D000688 ORTHO05D004737 3.8e-46 189.5 229 47.2
Hma1.2p1_2081F.1_g313530 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 3.2e-45 186.4 229 47.2
Nitab4.5_0001033g0090 Nicotiana tabacum HOM05D000688 ORTHO05D004737 5.4e-45 185.7 229 47.6
Cc08_g05510 Coffea canephora HOM05D000688 ORTHO05D004737 7.1e-45 185.3 229 46.3
CAN.G1269.4 Capsicum annuum HOM05D000688 ORTHO05D004737 2.7e-44 183.3 229 47.2
Lj8A737G24 Lonicera japonica HOM05D000688 ORTHO05D004737 3.5e-44 183.0 227 47.6
GSVIVG01035963001 Vitis vinifera HOM05D000688 ORTHO05D004737 6.0e-44 182.2 232 45.7
AUR62009365 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.3e-43 181.0 229 45.0
AUR62023046 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.3e-43 181.0 229 45.0
Peaxi162Scf00408g00711 Petunia axillaris HOM05D000688 ORTHO05D004737 1.3e-43 181.0 229 47.2
vmacro11243 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 1.3e-43 181.0 230 45.2
Cc01_g06880 Coffea canephora HOM05D000688 ORTHO05D004737 1.7e-43 180.6 237 44.7
EL10Ac2g04112 Beta vulgaris HOM05D000688 ORTHO05D004737 8.7e-43 178.3 228 45.6
CSS0012771 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 1.1e-42 177.9 228 44.3
CSS0012935 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 1.1e-42 177.9 228 44.3
CSS0050165 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 1.9e-42 177.2 228 43.9
Solyc03g110880.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 1.9e-42 177.2 229 46.7
Sopen03g030070 Solanum pennellii HOM05D000688 ORTHO05D004737 1.9e-42 177.2 229 46.7
DCAR_009948 Daucus carota HOM05D000688 ORTHO05D004737 2.5e-42 176.8 233 45.1
Ciclev10018562m.g Citrus clementina HOM05D000688 ORTHO05D004737 7.3e-42 175.3 251 42.6
Hma1.2p1_2362F.1_g320630 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 7.3e-42 175.3 194 50.0
Hund19557 Selenicereus undatus HOM05D000688 ORTHO05D004737 9.6e-42 174.9 229 44.5
Ah.16g104830 Amaranthus hybridus HOM05D000688 ORTHO05D004737 2.1e-41 173.7 258 41.9
CAN.G352.64 Capsicum annuum HOM05D000688 ORTHO05D004737 2.1e-41 173.7 229 45.0
Sed0003356 Sechium edule HOM05D000688 ORTHO05D004737 2.1e-41 173.7 231 45.0
PGSC0003DMG400030880 Solanum tuberosum HOM05D000688 ORTHO05D004737 1.1e-40 171.4 229 45.9
Solyc08g075940.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 2.4e-40 170.2 229 45.4
AUR62038757 Chenopodium quinoa HOM05D000688 ORTHO05D004737 4.0e-40 169.5 251 41.0
ClCG05G016300 Citrullus lanatus HOM05D000688 ORTHO05D004737 4.0e-40 169.5 231 44.2
PGR142G2531 Punica granatum HOM05D000688 ORTHO05D004737 4.0e-40 169.5 231 44.6
Sopen08g024590 Solanum pennellii HOM05D000688 ORTHO05D004737 4.0e-40 169.5 229 45.0
Medtr3g105990 Medicago truncatula HOM05D000688 ORTHO05D004737 5.3e-40 169.1 228 46.5
Medtr0189s0050 Medicago truncatula HOM05D000688 ORTHO05D004737 6.9e-40 168.7 228 46.1
MELO3C016960.2 Cucumis melo HOM05D000688 ORTHO05D004737 9.0e-40 168.3 231 44.2
Lalb_Chr23g0268231 Lupinus albus HOM05D000688 ORTHO05D004737 9.0e-40 168.3 229 44.5
CsaV3_4G036560 Cucumis sativus L. HOM05D000688 ORTHO05D004737 1.2e-39 167.9 231 43.3
CiPaw.07G230000 Carya illinoinensis HOM05D000688 ORTHO05D004737 2.0e-39 167.2 229 42.4
Thecc.09G016000 Theobroma cacao HOM05D000688 ORTHO05D004737 2.0e-39 167.2 229 44.5
DCAR_003109 Daucus carota HOM05D000688 ORTHO05D004737 4.4e-39 166.0 229 46.3
Eucgr.C00069 Eucalyptus grandis HOM05D000688 ORTHO05D004737 5.8e-39 165.6 229 44.1
Manes.03G009000 Manihot esculenta HOM05D000688 ORTHO05D004737 7.6e-39 165.2 229 42.8
COL.COLO4_18947 Corchorus olitorius HOM05D000688 ORTHO05D004737 1.3e-38 164.5 229 42.4
Duzib168G0339 Durio zibethinus HOM05D000688 ORTHO05D004737 1.3e-38 164.5 229 44.5
Gohir.A07G032700 Gossypium hirsutum HOM05D000688 ORTHO05D004737 1.7e-38 164.1 229 44.1
Lj7C733G5 Lonicera japonica HOM05D000688 ORTHO05D004737 1.7e-38 164.1 235 41.7
RcHm_v2.0_Chr2g0092681 Rosa chinensis HOM05D000688 ORTHO05D004737 1.7e-38 164.1 229 43.7
Prupe.1G393500 Prunus persica HOM05D000688 ORTHO05D004737 2.2e-38 163.7 247 43.3
Potri.018G019100 Populus trichocarpa HOM05D000688 ORTHO05D004737 2.9e-38 163.3 229 42.4
Lalb_Chr08g0244431 Lupinus albus HOM05D000688 ORTHO05D004737 4.9e-38 162.5 229 43.7
Ca_15777_v3 Cicer arietinum L. HOM05D000688 ORTHO05D004737 6.4e-38 162.2 229 44.1
Psat5g032960 Pisum sativum HOM05D000688 ORTHO05D004737 6.4e-38 162.2 229 44.5
Atru.chr2.841 Acer truncatum HOM05D000688 ORTHO05D004737 8.4e-38 161.8 229 41.5
QL02p018902 Quercus lobata HOM05D000688 ORTHO05D004737 1.1e-37 161.4 229 40.6
MD08G1057300 Malus domestica HOM05D000688 ORTHO05D004737 1.9e-37 160.6 247 42.9
Gohir.D07G036000 Gossypium hirsutum HOM05D000688 ORTHO05D004737 2.4e-37 160.2 229 43.7
Gorai.001G037900 Gossypium raimondii HOM05D000688 ORTHO05D004737 2.4e-37 160.2 229 43.7
HanXRQChr11g0320381 Helianthus annuus HOM05D000688 ORTHO05D004737 2.4e-37 160.2 230 42.2
FAN23G1159 Fragaria x ananassa HOM05D000688 ORTHO05D004737 3.2e-37 159.8 243 43.2
FAN26G2550 Fragaria x ananassa HOM05D000688 ORTHO05D004737 3.2e-37 159.8 243 43.2
FAN26G3128 Fragaria x ananassa HOM05D000688 ORTHO05D004737 3.2e-37 159.8 243 43.2
FAN28G1036 Fragaria x ananassa HOM05D000688 ORTHO05D004737 3.2e-37 159.8 243 43.2
MD15G1040100 Malus domestica HOM05D000688 ORTHO05D004737 3.2e-37 159.8 247 42.5
Manes.16G129400 Manihot esculenta HOM05D000688 ORTHO05D004737 3.2e-37 159.8 230 42.6
Glyma.04G061000 Glycine max HOM05D000688 ORTHO05D004737 4.2e-37 159.5 229 45.0
SHI21063 Sapria himalayana HOM05D000688 ORTHO05D004737 4.2e-37 159.5 229 44.1
Nn1g00540 Nelumbo nucifera HOM05D000688 ORTHO05D004737 5.4e-37 159.1 229 42.8
FvH4_1g06870 Fragaria vesca HOM05D000688 ORTHO05D004737 1.2e-36 157.9 243 42.8
FAN19G0885 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.2e-36 157.9 243 42.8
HanXRQChr15g0484591 Helianthus annuus HOM05D000688 ORTHO05D004737 1.2e-36 157.9 231 40.7
DCAR_022858 Daucus carota HOM05D000688 ORTHO05D004737 1.6e-36 157.5 233 42.9
Glyma.06G061600 Glycine max HOM05D000688 ORTHO05D004737 2.7e-36 156.8 229 44.5
arahy.Tifrunner.gnm1.ann1.35ZHP3 Arachis hypogaea HOM05D000688 ORTHO05D004737 3.5e-36 156.4 231 43.7
arahy.Tifrunner.gnm1.ann1.QT4Q57 Arachis hypogaea HOM05D000688 ORTHO05D004737 3.5e-36 156.4 231 43.7
Phvul.009G087100 Phaseolus vulgaris HOM05D000688 ORTHO05D004737 4.6e-36 156.0 229 43.7
Lsat_1_v5_gn_2_114740 Lactuca sativa HOM05D000688 ORTHO05D004737 7.9e-36 155.2 229 41.5
TAR624G0960 Trochodendron aralioides HOM05D000688 ORTHO05D004737 1.0e-35 154.8 228 42.5
CANSAT25G1723 Cannabis sativa HOM05D000688 ORTHO05D004737 1.3e-35 154.5 227 40.1
HanXRQChr01g0011481 Helianthus annuus HOM05D000688 ORTHO05D004737 1.7e-35 154.1 229 40.2
MBI05_g00401_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D004737 1.7e-35 154.1 223 42.2
TWI63G0903 Tripterygium wilfordii HOM05D000688 ORTHO05D004737 2.3e-35 153.7 243 41.2
Aqoxy5G02323 Aquilegia oxysepala HOM05D000688 ORTHO05D004737 3.9e-35 152.9 232 40.5
Sc09g0010620 Simmondsia chinensis HOM05D000688 ORTHO05D004737 3.9e-35 152.9 115 61.7
Lsat_1_v5_gn_9_69261 Lactuca sativa HOM05D000688 ORTHO05D004737 8.7e-35 151.8 235 40.4
Rhsim02G0213200 Rhododendron simsii HOM05D000688 ORTHO05D004737 3.3e-34 149.8 298 34.2
ECA238G1344 Erigeron canadensis HOM05D000688 ORTHO05D004737 5.6e-34 149.1 229 40.6
COL.COLO4_35449 Corchorus olitorius HOM05D000688 ORTHO05D004737 9.6e-34 148.3 262 38.5
VMungo1309G2219 Vigna mungo HOM05D000688 ORTHO05D004737 2.8e-33 146.7 229 41.9
Aa31LG8G4940 Aethionema arabicum HOM05D000688 ORTHO05D004737 6.2e-33 145.6 236 40.7
CARHR094240 Cardamine hirsuta HOM05D000688 ORTHO05D004737 3.1e-32 143.3 234 40.2
vmacro13779 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 3.1e-32 143.3 202 44.6
PGR142G3000 Punica granatum HOM05D000688 ORTHO05D004737 5.3e-32 142.5 229 40.2
THA.LOC104812243 Tarenaya hassleriana HOM05D000688 ORTHO05D004737 5.3e-32 142.5 115 58.3
TPR.G1854 Trifolium pratense HOM05D000688 ORTHO05D004737 5.3e-32 142.5 115 60.9
AUR62020625 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.2e-31 141.4 115 57.4
HPP92_002312 Vanilla planifolia HOM05D000688 ORTHO05D004737 1.2e-31 141.4 228 39.5
Lj1g0018077 Lotus japonicus HOM05D000688 ORTHO05D004737 1.3e-30 137.9 115 53.9
PSO017G0269 Papaver somniferum HOM05D000688 ORTHO05D004737 2.2e-30 137.1 233 37.3
PSO478G0475 Papaver somniferum HOM05D000688 ORTHO05D004737 2.2e-30 137.1 233 37.3
Zm00001eb068960 Zea mays HOM05D000688 ORTHO05D004737 6.4e-30 135.6 228 37.3
Nitab4.5_0006753g0010 Nicotiana tabacum HOM05D000688 ORTHO05D004737 1.4e-29 134.4 198 43.9
CDE08G0441 Ceratophyllum demersum HOM05D000688 ORTHO05D004737 3.2e-29 133.3 228 37.3
ATR0564G243 Amborella trichopoda HOM05D000688 ORTHO05D004737 3.0e-27 126.7 235 35.3
Zm00001eb415030 Zea mays HOM05D000688 ORTHO05D004737 5.1e-27 125.9 220 37.3
RcHm_v2.0_Chr5g0042251 Rosa chinensis HOM05D000688 ORTHO05D004737 6.7e-27 125.6 115 53.9
ECA232G0687 Erigeron canadensis HOM05D000688 ORTHO05D004737 2.5e-26 123.6 118 53.4
AT3G23780 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 1.3e-25 121.3 120 52.5
C05p48100 Brassica napus HOM05D000688 ORTHO05D004737 2.8e-25 120.2 122 53.3
BolC5t33520H Brassica oleracea HOM05D000688 ORTHO05D004737 2.8e-25 120.2 122 53.3
BolC5t33551H Brassica oleracea HOM05D000688 ORTHO05D004737 2.8e-25 120.2 122 53.3
AL3G31250 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 3.7e-25 119.8 120 51.7
AL3G38680 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 3.7e-25 119.8 120 51.7
A05p31700 Brassica napus HOM05D000688 ORTHO05D004737 4.8e-25 119.4 122 52.5
BraA05t22003Z Brassica rapa HOM05D000688 ORTHO05D004737 4.8e-25 119.4 122 52.5
AT3G18090 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 6.2e-25 119.0 120 51.7
Thhalv10019931m.g Eutrema salsugineum HOM05D000688 ORTHO05D004737 8.1e-25 118.6 102 58.8
Sp3g16210 Schrenkiella parvula HOM05D000688 ORTHO05D004737 8.1e-25 118.6 133 47.4
Cpa.g.sc127.33 Carica papaya HOM05D000688 ORTHO05D004737 5.3e-24 115.9 208 38.5
SEGI_06643 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 2.0e-23 114.0 240 34.2
Haze_21420 Corylus avellana HOM05D000688 ORTHO05D004737 2.6e-23 113.6 214 37.9
Zm00001eb431870 Zea mays HOM05D000688 ORTHO05D004737 2.6e-23 113.6 114 47.4
Os04g0641000 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 1.3e-22 111.3 114 45.6
RcHm_v2.0_Chr5g0042281 Rosa chinensis HOM05D000688 ORTHO05D004737 1.8e-16 90.9 227 32.2
SEGI_35986 Sequoiadendron giganteum HOM05D000688 ORTHO05D037575 1.3e-11 74.7 203 28.1
Nitab4.5_0006627g0050 Nicotiana tabacum HOM05D000688 ORTHO05D004737 5.7e-10 69.3 151 35.8
unitig_8.g3064 Utricularia gibba HOM05D000688 ORTHO05D037575 2.8e-09 67.0 135 37.0
Pp3c15_16480 Physcomitrium patens HOM05D000688 ORTHO05D004737 6.9e-08 62.4 252 24.6
Haze_26445 Corylus avellana HOM05D000688 ORTHO05D003888 9.0e-08 62.0 119 28.6
Glyma.15G073832 Glycine max HOM05D000688 ORTHO05D003891 1.5e-07 61.2 106 34.9
Oeu025366.1 Olea europaea HOM05D000688 ORTHO05D004737 1.5e-07 61.2 50 60.0
COL.COLO4_29107 Corchorus olitorius HOM05D000688 ORTHO05D004737 5.9e-07 59.3 39 61.5
Mapoly0058s0108 Marchantia polymorpha HOM05D000688 ORTHO05D004737 5.9e-07 59.3 276 26.4
Pp3c4_16140 Physcomitrium patens HOM05D000688 ORTHO05D004737 5.9e-07 59.3 220 31.4
AagrBONN_evm.TU.Sc2ySwM_228.1461 Anthoceros agrestis HOM05D000688 ORTHO05D004737 2.2e-06 57.4 129 34.9
Carub.0003s1782 Capsella rubella HOM05D000688 ORTHO05D004737 2.9e-06 57.0 47 61.7
CARHR177390 Cardamine hirsuta HOM05D000688 ORTHO05D003888 3.8e-06 56.6 127 29.9
TPR.G26445 Trifolium pratense HOM05D000688 ORTHO05D003888 5.0e-06 56.2 106 31.1
PRCOL_00004652 Prasinoderma coloniale HOM05D000688 ORTHO05D003888 6.5e-06 55.8 136 29.4
Lj2A288T66 Lonicera japonica HOM05D000688 ORTHO05D003891 8.5e-06 55.5 131 31.3


User provided reference genes

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