Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_40414 Sequoiadendron giganteum HOM05D002182 ORTHO05D004671 1.9e-49 198.7 91 100.0
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 2.8e-21 105.1 63 71.4
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 4.1e-20 101.3 63 68.3
Dinv35485 Davidia involucrata HOM05D002182 ORTHO05D004671 1.5e-19 99.4 63 66.7
Nn5g28440 Nelumbo nucifera HOM05D002182 ORTHO05D004671 1.5e-19 99.4 97 50.5
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 1.3e-18 96.3 98 48.0
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 1.3e-18 96.3 63 63.5
Zm00001eb005010 Zea mays HOM05D002182 ORTHO05D004671 1.7e-18 95.9 63 60.3
AUR62000512 Chenopodium quinoa HOM05D002182 ORTHO05D004671 2.2e-18 95.5 63 63.5
Cc07_g19240 Coffea canephora HOM05D002182 ORTHO05D004671 2.9e-18 95.1 98 48.0
TAR376G0522 Trochodendron aralioides HOM05D002182 ORTHO05D004671 2.9e-18 95.1 63 61.9
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 3.8e-18 94.7 63 63.5
Ah.06g191020 Amaranthus hybridus HOM05D002182 ORTHO05D004671 3.8e-18 94.7 63 63.5
Psat5g060640 Pisum sativum HOM05D002182 ORTHO05D004671 3.8e-18 94.7 63 61.9
Sc16g0009510 Simmondsia chinensis HOM05D002182 ORTHO05D004671 3.8e-18 94.7 63 60.3
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 5.0e-18 94.4 63 63.5
Migut.H00803 Erythranthe guttata HOM05D002182 ORTHO05D004671 6.5e-18 94.0 98 46.9
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 6.5e-18 94.0 63 60.3
SGA_v2.0_scaffold54G19590 Striga asiatica HOM05D002182 ORTHO05D004671 6.5e-18 94.0 63 63.5
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 6.5e-18 94.0 60 63.3
Ca_16979_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 8.5e-18 93.6 63 58.7
HanXRQChr01g0016921 Helianthus annuus HOM05D002182 ORTHO05D004671 8.5e-18 93.6 63 58.7
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 1.1e-17 93.2 63 61.9
Actinidia20028 Actinidia chinensis HOM05D002182 ORTHO05D004671 1.9e-17 92.4 63 61.9
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 1.9e-17 92.4 63 58.7
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 1.9e-17 92.4 63 58.7
ECA248G2894 Erigeron canadensis HOM05D002182 ORTHO05D004671 1.9e-17 92.4 63 61.9
Prupe.4G275500 Prunus persica HOM05D002182 ORTHO05D004671 1.9e-17 92.4 63 60.3
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 2.5e-17 92.0 63 58.7
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 2.5e-17 92.0 63 58.7
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 2.5e-17 92.0 63 58.7
PGR102G1182 Punica granatum HOM05D002182 ORTHO05D004671 4.2e-17 91.3 63 58.7
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 5.5e-17 90.9 63 58.7
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 5.5e-17 90.9 63 58.7
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 5.5e-17 90.9 97 45.4
Os03g0165000 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D004671 5.5e-17 90.9 63 58.7
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 5.5e-17 90.9 63 57.1
SMO114G0082 Selaginella moellendorffii HOM05D002182 ORTHO05D004671 5.5e-17 90.9 63 57.1
TPR.G33581 Trifolium pratense HOM05D002182 ORTHO05D004671 5.5e-17 90.9 63 57.1
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 7.2e-17 90.5 63 57.1
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 9.3e-17 90.1 63 58.7
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 9.3e-17 90.1 63 58.7
Medtr3g096640 Medicago truncatula HOM05D002182 ORTHO05D004671 9.3e-17 90.1 63 55.6
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 1.2e-16 89.7 63 57.1
AagrBONN_evm.TU.Sc2ySwM_228.5819 Anthoceros agrestis HOM05D002182 ORTHO05D004671 2.1e-16 89.0 68 55.9
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 2.1e-16 89.0 63 57.1
PSO443G0075 Papaver somniferum HOM05D002182 ORTHO05D004671 2.1e-16 89.0 63 58.7
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 2.7e-16 88.6 63 55.6
PSO384G2582 Papaver somniferum HOM05D002182 ORTHO05D004671 2.7e-16 88.6 63 58.7
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 4.6e-16 87.8 98 44.9
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 4.6e-16 87.8 63 54.0
Lsat_1_v5_gn_1_78841 Lactuca sativa HOM05D002182 ORTHO05D004671 6.1e-16 87.4 65 58.5
Ciclev10003112m.g Citrus clementina HOM05D002182 ORTHO05D004671 7.9e-16 87.0 63 55.6
Sabra05G0055200 Salix brachista HOM05D002182 ORTHO05D004671 1.0e-15 86.7 63 52.4
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 2.3e-15 85.5 63 52.4
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 3.0e-15 85.1 63 52.4
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 5.1e-15 84.3 95 43.2
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 6.7e-15 84.0 63 57.1
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 8.8e-15 83.6 95 42.1
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 1.1e-14 83.2 95 42.1
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 2.5e-14 82.0 63 52.4
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 2.5e-14 82.0 59 54.2
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 3.3e-14 81.6 63 54.0
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 3.3e-14 81.6 95 42.1
Nitab4.5_0001277g0010 Nicotiana tabacum HOM05D002182 ORTHO05D004671 4.3e-14 81.3 57 57.9
CSS0039016 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 5.7e-14 80.9 54 61.1
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 7.4e-14 80.5 63 52.4
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 7.4e-14 80.5 63 50.8
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 7.4e-14 80.5 63 52.4
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 7.4e-14 80.5 63 52.4
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 7.4e-14 80.5 63 50.8
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 1.3e-13 79.7 63 52.4
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 1.7e-13 79.3 63 50.8
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 1.7e-13 79.3 63 50.8
Rhsim10G0124100 Rhododendron simsii HOM05D002182 ORTHO05D004671 1.7e-13 79.3 89 43.8
HPP92_005917 Vanilla planifolia HOM05D002182 ORTHO05D004671 2.8e-13 78.6 54 63.0
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 1.1e-12 76.6 54 57.4
FAN23G2071 Fragaria x ananassa HOM05D002182 ORTHO05D004671 1.8e-12 75.9 51 58.8
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 2.4e-12 75.5 55 58.2
Sed0010212 Sechium edule HOM05D002182 ORTHO05D004671 3.1e-12 75.1 54 51.9
vmacro12745 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 9.1e-12 73.6 59 54.2
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 1.0e-10 70.1 70 48.6
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 2.2e-10 68.9 54 48.1
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 3.8e-10 68.2 53 50.9
QL10p041326 Quercus lobata HOM05D002182 ORTHO05D004671 6.1e-08 60.8 35 65.7
AUR62006857 Chenopodium quinoa HOM05D002182 ORTHO05D004671 1.8e-07 59.3 35 68.6
FAN19G2097 Fragaria x ananassa HOM05D002182 ORTHO05D004671 5.1e-07 57.8 35 57.1
PRCOL_00003192 Prasinoderma coloniale HOM05D002182 ORTHO05D004671 7.4e-06 53.9 69 36.2


User provided reference genes

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