Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_26496 Sequoiadendron giganteum HOM05D001061 ORTHO05D007103 2.3e-134 482.3 246 100.0
Rhsim03G0244000 Rhododendron simsii HOM05D001061 ORTHO05D007103 7.5e-45 184.9 157 63.1
GSVIVG01015407001 Vitis vinifera HOM05D001061 ORTHO05D007103 1.4e-43 180.6 158 62.7
Lj7C648T3 Lonicera japonica HOM05D001061 ORTHO05D007103 4.1e-43 179.1 157 61.1
Gohir.D06G059600 Gossypium hirsutum HOM05D001061 ORTHO05D007103 5.4e-43 178.7 157 60.5
Gorai.010G069400 Gossypium raimondii HOM05D001061 ORTHO05D007103 5.4e-43 178.7 157 60.5
Gohir.A06G061200 Gossypium hirsutum HOM05D001061 ORTHO05D007103 1.2e-42 177.6 157 61.1
Cc06_g09530 Coffea canephora HOM05D001061 ORTHO05D007103 2.1e-42 176.8 162 59.3
Aqoxy7G01745 Aquilegia oxysepala HOM05D001061 ORTHO05D007103 2.7e-42 176.4 157 58.6
CSS0031012 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D007103 2.7e-42 176.4 157 60.5
CSS0031111 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D007103 2.7e-42 176.4 157 60.5
Ah.14g081830 Amaranthus hybridus HOM05D001061 ORTHO05D007103 3.5e-42 176.0 204 48.0
Lsat_1_v5_gn_7_42200 Lactuca sativa HOM05D001061 ORTHO05D007103 3.5e-42 176.0 157 61.8
AT3G24495 Arabidopsis thaliana HOM05D001061 ORTHO05D007103 4.6e-42 175.6 183 55.7
TAR624G1442 Trochodendron aralioides HOM05D001061 ORTHO05D007103 4.6e-42 175.6 157 61.8
Carub.0003s2480 Capsella rubella HOM05D001061 ORTHO05D007103 1.0e-41 174.5 183 55.2
DCAR_010445 Daucus carota HOM05D001061 ORTHO05D007103 1.0e-41 174.5 212 48.1
Migut.K00458 Erythranthe guttata HOM05D001061 ORTHO05D007103 1.0e-41 174.5 157 59.2
QL02p085695 Quercus lobata HOM05D001061 ORTHO05D007103 1.0e-41 174.5 157 59.9
Phvul.004G162000 Phaseolus vulgaris HOM05D001061 ORTHO05D007103 1.3e-41 174.1 163 58.3
THA.LOC104804581 Tarenaya hassleriana HOM05D001061 ORTHO05D007103 1.7e-41 173.7 157 61.1
Thecc.09G112600 Theobroma cacao HOM05D001061 ORTHO05D007103 1.7e-41 173.7 157 59.9
ECA240G3988 Erigeron canadensis HOM05D001061 ORTHO05D007103 2.3e-41 173.3 157 59.9
MD15G1187500 Malus domestica HOM05D001061 ORTHO05D007103 3.0e-41 172.9 155 60.0
Manes.03G019100 Manihot esculenta HOM05D001061 ORTHO05D007103 3.0e-41 172.9 157 58.6
VMungo0464G1924 Vigna mungo HOM05D001061 ORTHO05D007103 3.0e-41 172.9 157 59.9
AL3G39960 Arabidopsis lyrata HOM05D001061 ORTHO05D007103 3.9e-41 172.6 183 55.2
MSTRG.10679 Avicennia marina HOM05D001061 ORTHO05D007103 6.6e-41 171.8 157 58.0
FvH4_1g05130 Fragaria vesca HOM05D001061 ORTHO05D007103 6.6e-41 171.8 155 60.0
FAN26G2007 Fragaria x ananassa HOM05D001061 ORTHO05D007103 6.6e-41 171.8 155 60.0
arahy.Tifrunner.gnm1.ann1.JX0W3T Arachis hypogaea HOM05D001061 ORTHO05D007103 8.6e-41 171.4 214 48.1
Thhalv10002887m.g Eutrema salsugineum HOM05D001061 ORTHO05D007103 1.1e-40 171.0 188 54.8
Glyma.07G087700 Glycine max HOM05D001061 ORTHO05D007103 1.1e-40 171.0 163 57.7
Sp3g22270 Schrenkiella parvula HOM05D001061 ORTHO05D007103 1.1e-40 171.0 157 60.5
Duzib187G1842 Durio zibethinus HOM05D001061 ORTHO05D007103 1.5e-40 170.6 157 58.6
Peaxi162Scf00560g00212 Petunia axillaris HOM05D001061 ORTHO05D007103 1.5e-40 170.6 157 60.5
EL10Ac8g18512 Beta vulgaris HOM05D001061 ORTHO05D007103 1.9e-40 170.2 212 45.3
FAN28G2546 Fragaria x ananassa HOM05D001061 ORTHO05D007103 1.9e-40 170.2 155 59.4
Sed0018816 Sechium edule HOM05D001061 ORTHO05D007103 2.5e-40 169.9 157 57.3
AagrBONN_evm.TU.Sc2ySwM_117.3304 Anthoceros agrestis HOM05D001718 ORTHO05D008006 4.3e-40 169.1 157 58.0
Cfa003275 Carpinus fangiana HOM05D001061 ORTHO05D007103 4.3e-40 169.1 157 58.6
AUR62011008 Chenopodium quinoa HOM05D001061 ORTHO05D007103 4.3e-40 169.1 207 46.9
HanXRQChr09g0239571 Helianthus annuus HOM05D001061 ORTHO05D007103 4.3e-40 169.1 157 58.6
Lj2g0015753 Lotus japonicus HOM05D001061 ORTHO05D007103 4.3e-40 169.1 157 58.6
Prupe.7G228900 Prunus persica HOM05D001061 ORTHO05D007103 4.3e-40 169.1 155 59.4
FAN19G2497 Fragaria x ananassa HOM05D001061 ORTHO05D007103 5.6e-40 168.7 155 59.4
RcHm_v2.0_Chr2g0090761 Rosa chinensis HOM05D001061 ORTHO05D007103 5.6e-40 168.7 155 58.7
Sc08g0007370 Simmondsia chinensis HOM05D001061 ORTHO05D007103 5.6e-40 168.7 160 53.8
A01p30870 Brassica napus HOM05D001061 ORTHO05D007103 7.3e-40 168.3 157 59.2
C01p39230 Brassica napus HOM05D001061 ORTHO05D007103 7.3e-40 168.3 157 59.2
BolC1t03872H Brassica oleracea HOM05D001061 ORTHO05D007103 7.3e-40 168.3 157 59.2
BraA01t03215Z Brassica rapa HOM05D001061 ORTHO05D007103 7.3e-40 168.3 157 59.2
Nn2g11780 Nelumbo nucifera HOM05D001061 ORTHO05D007103 7.3e-40 168.3 157 59.2
BcaB04g20386 Brassica carinata HOM05D001061 ORTHO05D007103 9.5e-40 167.9 157 59.2
Mapoly0051s0023 Marchantia polymorpha HOM05D001061 ORTHO05D007103 9.5e-40 167.9 164 57.3
PSO063G0257 Papaver somniferum HOM05D001061 ORTHO05D007103 9.5e-40 167.9 157 57.3
CiPaw.03G233800 Carya illinoinensis HOM05D001061 ORTHO05D007103 1.2e-39 167.5 157 58.0
AUR62021519 Chenopodium quinoa HOM05D001061 ORTHO05D007103 1.2e-39 167.5 207 46.9
TWI34G0314 Tripterygium wilfordii HOM05D001061 ORTHO05D007103 1.2e-39 167.5 157 58.0
CsaV3_2G002320 Cucumis sativus L. HOM05D001061 ORTHO05D007103 1.6e-39 167.2 157 57.3
Cpa.g.sc23.115 Carica papaya HOM05D001061 ORTHO05D007103 2.1e-39 166.8 157 58.0
ATR1120G204 Amborella trichopoda HOM05D001061 ORTHO05D007103 2.8e-39 166.4 197 48.7
Dinv41590 Davidia involucrata HOM05D001061 ORTHO05D007103 4.7e-39 165.6 165 55.8
SalBow1G8271 Salvia bowleyana HOM05D001061 ORTHO05D007103 4.7e-39 165.6 159 55.3
Glyma.09G189100 Glycine max HOM05D001061 ORTHO05D007103 1.1e-38 164.5 163 55.2
Aa31LG8G11230 Aethionema arabicum HOM05D001061 ORTHO05D007103 1.4e-38 164.1 157 58.6
Ca_25521_v3 Cicer arietinum L. HOM05D000528 ORTHO05D001569 2.3e-38 163.3 157 56.1
PSO782G4005 Papaver somniferum HOM05D001061 ORTHO05D007103 2.3e-38 163.3 157 56.1
Lalb_Chr22g0352891 Lupinus albus HOM05D001061 ORTHO05D007103 4.0e-38 162.5 160 56.2
Medtr6g086270 Medicago truncatula HOM05D001061 ORTHO05D007103 4.0e-38 162.5 157 55.4
Sopen07g007490 Solanum pennellii HOM05D001061 ORTHO05D007103 4.0e-38 162.5 157 58.0
SGA_v2.0_scaffold109G31024 Striga asiatica HOM05D001061 ORTHO05D007103 4.0e-38 162.5 157 56.1
Zm00001eb122180 Zea mays HOM05D001061 ORTHO05D007103 6.8e-38 161.8 172 53.5
Eucgr.C03861 Eucalyptus grandis HOM05D001061 ORTHO05D007103 1.5e-37 160.6 158 55.1
SMO339G0051 Selaginella moellendorffii HOM05D001061 ORTHO05D007103 1.5e-37 160.6 175 50.9
Potri.006G156314 Populus trichocarpa HOM05D001061 ORTHO05D007103 2.0e-37 160.2 157 53.5
Potri.006G159200 Populus trichocarpa HOM05D001061 ORTHO05D007103 2.0e-37 160.2 157 53.5
Os01g0180600 Oryza sativa ssp. japonica HOM05D001061 ORTHO05D007103 2.6e-37 159.8 171 53.2
Pp3c9_1020 Physcomitrium patens HOM05D001061 ORTHO05D007103 2.6e-37 159.8 162 54.9
HPP92_003629 Vanilla planifolia HOM05D001061 ORTHO05D007103 3.4e-37 159.5 157 54.8
Ciclev10007291m.g Citrus clementina HOM05D001061 ORTHO05D007103 5.8e-37 158.7 155 55.5
TPR.G30580 Trifolium pratense HOM05D001061 ORTHO05D007103 7.6e-37 158.3 157 55.4
FAN26G1132 Fragaria x ananassa HOM05D001061 ORTHO05D007103 1.3e-36 157.5 199 46.7
ClCG11G002520 Citrullus lanatus HOM05D001061 ORTHO05D007103 4.9e-36 155.6 164 51.8
PGR102G2005 Punica granatum HOM05D001061 ORTHO05D007103 6.4e-36 155.2 157 53.5
Psat1g040600 Pisum sativum HOM05D001061 ORTHO05D007103 1.9e-35 153.7 214 45.8
Sabra06G0125100 Salix brachista HOM05D001061 ORTHO05D007103 2.4e-35 153.3 167 49.1
arahy.Tifrunner.gnm1.ann1.9ST7G9 Arachis hypogaea HOM05D001061 ORTHO05D007103 4.1e-35 152.5 158 55.7
COL.COLO4_34897 Corchorus olitorius HOM05D001061 ORTHO05D007103 7.1e-35 151.8 196 46.4
ATR0605G342 Amborella trichopoda HOM05D001061 ORTHO05D007103 4.6e-34 149.1 158 54.4
AagrBONN_evm.TU.Sc2ySwM_117.3299 Anthoceros agrestis HOM05D001061 ORTHO05D007103 1.7e-33 147.1 138 58.0
SEGI_04469 Sequoiadendron giganteum HOM05D001061 ORTHO05D007103 1.5e-32 144.1 86 90.7
Nitab4.5_0004944g0020 Nicotiana tabacum HOM05D001061 ORTHO05D007103 9.6e-32 141.4 128 60.9
Solyc07g018350.2 Solanum lycopersicum HOM05D001061 ORTHO05D007103 2.4e-30 136.7 128 59.4
Oeu055866.1 Olea europaea HOM05D001061 ORTHO05D007103 8.9e-30 134.8 157 52.2
Hund09195 Selenicereus undatus HOM05D001061 ORTHO05D007103 2.6e-29 133.3 272 34.2
MELO3C004552.2 Cucumis melo HOM05D001061 ORTHO05D007103 3.2e-27 126.3 129 54.3
vmacro06204 Vaccinium macrocarpon HOM05D001061 ORTHO05D007103 1.2e-26 124.4 104 61.5
Nitab4.5_0001641g0040 Nicotiana tabacum HOM05D001061 ORTHO05D007103 1.0e-25 121.3 127 54.3
Lsat_1_v5_gn_6_82321 Lactuca sativa HOM05D000295 ORTHO05D007103 8.1e-23 111.7 166 44.0
CANSAT56G2687 Cannabis sativa HOM05D001061 ORTHO05D007103 9.9e-21 104.8 83 67.5
Atru.chr7.1329 Acer truncatum HOM05D001061 ORTHO05D007103 2.1e-18 97.1 94 55.3
SEGI_35746 Sequoiadendron giganteum HOM05D011039 ORTHO05D000001 6.7e-17 92.0 80 53.8
SEGI_03252 Sequoiadendron giganteum HOM05D000399 ORTHO05D000304 8.7e-17 91.7 72 63.9
CARHR100600 Cardamine hirsuta HOM05D001061 ORTHO05D007103 1.9e-16 90.5 64 70.3
unitig_899.g15438 Utricularia gibba HOM05D001061 ORTHO05D007103 8.1e-15 85.1 129 41.1
SEGI_25483 Sequoiadendron giganteum HOM05D003053 ORTHO05D003431 1.8e-14 84.0 71 53.5
SEGI_34441 Sequoiadendron giganteum HOM05D011039 ORTHO05D000001 2.9e-12 76.6 73 52.1
SEGI_19337 Sequoiadendron giganteum HOM05D000222 ORTHO05D014681 6.4e-12 75.5 79 45.6
Hund09627 Selenicereus undatus HOM05D001061 ORTHO05D006808 5.5e-11 72.4 151 34.4
CSS0047021 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D006808 1.2e-10 71.2 150 32.0
Actinidia25844 Actinidia chinensis HOM05D001061 ORTHO05D006808 2.7e-10 70.1 150 31.3
SEGI_17801 Sequoiadendron giganteum HOM05D000724 ORTHO05D000755 2.7e-10 70.1 70 50.0
SEGI_18625 Sequoiadendron giganteum HOM05D000042 ORTHO05D385374 3.5e-10 69.7 72 47.2
Lj1A18T22 Lonicera japonica HOM05D001061 ORTHO05D006808 4.6e-10 69.3 150 32.7
CSS0018335 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D006808 7.9e-10 68.6 150 31.3
SEGI_09145 Sequoiadendron giganteum HOM05D001061 ORTHO05D006808 7.9e-10 68.6 152 30.3
arahy.Tifrunner.gnm1.ann1.X1CI0G Arachis hypogaea HOM05D001061 ORTHO05D006808 1.0e-09 68.2 150 33.3
Lj1g0020273 Lotus japonicus HOM05D001061 ORTHO05D006808 1.0e-09 68.2 151 33.1
SEGI_24394 Sequoiadendron giganteum HOM05D000435 ORTHO05D000430 1.0e-09 68.2 79 41.8
Medtr7g109470 Medicago truncatula HOM05D001061 ORTHO05D006808 1.3e-09 67.8 151 32.5
arahy.Tifrunner.gnm1.ann1.LRQA6N Arachis hypogaea HOM05D001061 ORTHO05D006808 1.8e-09 67.4 150 32.7
VMungo1383G2073 Vigna mungo HOM05D001061 ORTHO05D006808 2.3e-09 67.0 151 33.1
MBI19_g17401_MAGBIO Magnolia biondii HOM05D001061 ORTHO05D006808 3.0e-09 66.6 151 29.8
ECA236G3964 Erigeron canadensis HOM05D001061 ORTHO05D006808 3.9e-09 66.2 151 31.8
Lsat_1_v5_gn_8_165800 Lactuca sativa HOM05D001061 ORTHO05D006808 3.9e-09 66.2 152 31.6
Atru.chr5.1014 Acer truncatum HOM05D001061 ORTHO05D006808 6.7e-09 65.5 151 31.8
Lalb_Chr15g0078211 Lupinus albus HOM05D001061 ORTHO05D006808 6.7e-09 65.5 151 31.8
Phvul.001G212500 Phaseolus vulgaris HOM05D001061 ORTHO05D006808 6.7e-09 65.5 151 33.8
Actinidia21002 Actinidia chinensis HOM05D001061 ORTHO05D006808 1.1e-08 64.7 150 31.3
MD03G1296000 Malus domestica HOM05D001061 ORTHO05D006808 1.1e-08 64.7 151 33.1
RcHm_v2.0_Chr7g0241701 Rosa chinensis HOM05D001061 ORTHO05D006808 1.1e-08 64.7 151 33.8
TPR.G4121 Trifolium pratense HOM05D001061 ORTHO05D006808 1.1e-08 64.7 151 31.1
PGR044G1584 Punica granatum HOM05D001061 ORTHO05D006808 1.5e-08 64.3 151 31.8
CsaV3_7G029930 Cucumis sativus L. HOM05D001061 ORTHO05D006808 1.9e-08 63.9 150 31.3
Nitab4.5_0008811g0030 Nicotiana tabacum HOM05D001061 ORTHO05D006808 1.9e-08 63.9 151 30.5
Psat3g020000 Pisum sativum HOM05D001061 ORTHO05D006808 1.9e-08 63.9 151 32.5
Prupe.8G271300 Prunus persica HOM05D001061 ORTHO05D006808 1.9e-08 63.9 151 31.8
SEGI_18324 Sequoiadendron giganteum HOM05D000109 ORTHO05D010192 1.9e-08 63.9 79 38.0
A07p08120 Brassica napus HOM05D001061 ORTHO05D014109 2.5e-08 63.5 59 57.6
CANSAT25G3364 Cannabis sativa HOM05D001061 ORTHO05D006808 2.5e-08 63.5 150 30.0
A09p55030 Brassica napus HOM05D001061 ORTHO05D014109 3.3e-08 63.2 55 61.8
BraA09t35717Z Brassica rapa HOM05D002113 ORTHO05D002124 3.3e-08 63.2 55 61.8
BraA09t42048Z Brassica rapa HOM05D001061 ORTHO05D014109 3.3e-08 63.2 55 61.8
Sopen01g031290 Solanum pennellii HOM05D001061 ORTHO05D006808 3.3e-08 63.2 151 30.5
EL10As5g23522 Beta vulgaris HOM05D001061 ORTHO05D006808 4.3e-08 62.8 151 29.8
Cpa.g.sc50.141 Carica papaya HOM05D001061 ORTHO05D006808 4.3e-08 62.8 151 31.8
Eucgr.K03542 Eucalyptus grandis HOM05D001061 ORTHO05D006808 4.3e-08 62.8 154 33.8
Solyc01g079520.3 Solanum lycopersicum HOM05D001061 ORTHO05D006808 4.3e-08 62.8 151 30.5
THA.LOC104825941 Tarenaya hassleriana HOM05D001061 ORTHO05D006808 5.6e-08 62.4 150 28.7
Gohir.D07G132500 Gossypium hirsutum HOM05D001061 ORTHO05D006808 7.4e-08 62.0 151 30.5
Gorai.001G143900 Gossypium raimondii HOM05D001061 ORTHO05D006808 7.4e-08 62.0 151 30.5
SEGI_36054 Sequoiadendron giganteum HOM05D011039 ORTHO05D000001 7.4e-08 62.0 85 42.4
Gohir.A07G128100 Gossypium hirsutum HOM05D001061 ORTHO05D006808 9.6e-08 61.6 151 30.5
Sp6g01950 Schrenkiella parvula HOM05D001061 ORTHO05D006808 9.6e-08 61.6 152 31.6
Dinv33112 Davidia involucrata HOM05D001061 ORTHO05D006808 1.3e-07 61.2 154 33.1
Glyma.03G219033 Glycine max HOM05D001061 ORTHO05D006808 1.3e-07 61.2 147 32.7
CAN.G777.8 Capsicum annuum HOM05D001061 ORTHO05D006808 1.6e-07 60.8 151 29.8
FvH4_5g39410 Fragaria vesca HOM05D001061 ORTHO05D006808 1.6e-07 60.8 151 32.5
FAN08G2155 Fragaria x ananassa HOM05D001061 ORTHO05D006808 1.6e-07 60.8 151 32.5
FAN08G2326 Fragaria x ananassa HOM05D001061 ORTHO05D006808 1.6e-07 60.8 151 32.5
Lalb_Chr18g0049161 Lupinus albus HOM05D001061 ORTHO05D006808 1.6e-07 60.8 151 33.8
SEGI_18066 Sequoiadendron giganteum HOM05D000260 ORTHO05D002276 1.6e-07 60.8 79 43.0
Duzib138G0299 Durio zibethinus HOM05D001061 ORTHO05D006808 2.1e-07 60.5 151 30.5
Nitab4.5_0001301g0050 Nicotiana tabacum HOM05D001061 ORTHO05D006808 2.1e-07 60.5 151 29.1
QL12p020098 Quercus lobata HOM05D001061 ORTHO05D006808 2.1e-07 60.5 151 31.8
FAN13G0115 Fragaria x ananassa HOM05D001061 ORTHO05D006808 2.8e-07 60.1 151 32.5
COL.COLO4_23240 Corchorus olitorius HOM05D001061 ORTHO05D006808 3.7e-07 59.7 150 31.3
BcaB01g02414 Brassica carinata HOM05D001061 ORTHO05D006808 4.8e-07 59.3 151 29.1
Atru.chr10.209 Acer truncatum HOM05D000002 ORTHO05D000001 6.2e-07 58.9 82 35.4
A03p31260 Brassica napus HOM05D001061 ORTHO05D006808 6.2e-07 58.9 151 28.5
CiPaw.07G116800 Carya illinoinensis HOM05D001061 ORTHO05D006808 8.1e-07 58.5 150 30.0
BolC3t16097H Brassica oleracea HOM05D001061 ORTHO05D006808 1.1e-06 58.2 151 28.5
Cfa005809 Carpinus fangiana HOM05D001061 ORTHO05D006808 1.1e-06 58.2 151 31.1
Sed0020923 Sechium edule HOM05D001061 ORTHO05D006808 1.1e-06 58.2 151 30.5
SEGI_13913 Sequoiadendron giganteum HOM05D001061 ORTHO05D007103 1.1e-06 58.2 28 100.0
SEGI_04162 Sequoiadendron giganteum HOM05D011039 ORTHO05D000001 1.4e-06 57.8 66 42.4
SEGI_24350 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 1.4e-06 57.8 54 51.9
BraA03t12306Z Brassica rapa HOM05D001061 ORTHO05D006808 2.4e-06 57.0 151 27.8
CARHR249610 Cardamine hirsuta HOM05D001061 ORTHO05D006808 2.4e-06 57.0 151 28.5
C03p38100 Brassica napus HOM05D001061 ORTHO05D006808 3.1e-06 56.6 151 27.8
AT4G02070 Arabidopsis thaliana HOM05D001061 ORTHO05D006808 4.0e-06 56.2 151 29.1
THA.LOC104800423 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 5.3e-06 55.8 83 37.3
AL6G51170 Arabidopsis lyrata HOM05D001061 ORTHO05D006808 6.9e-06 55.5 151 27.8
Thhalv10028364m.g Eutrema salsugineum HOM05D001061 ORTHO05D006808 6.9e-06 55.5 151 27.8


User provided reference genes

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