Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24819 Sequoiadendron giganteum HOM05D066805 ORTHO05D005814 0.0e+00 1123.6 599 100.0
SEGI_31273 Sequoiadendron giganteum HOM05D066805 ORTHO05D385355 1.8e-153 547.0 282 100.0
SEGI_04973 Sequoiadendron giganteum HOM05D004823 ORTHO05D005814 1.3e-66 258.5 293 52.6
ATR0705G062 Amborella trichopoda HOM05D004823 ORTHO05D005814 1.9e-57 228.0 410 35.6
Dinv31197 Davidia involucrata HOM05D004823 ORTHO05D005814 1.6e-56 224.9 413 36.8
Cfa011006 Carpinus fangiana HOM05D004823 ORTHO05D005814 1.1e-54 218.8 409 36.4
Nn1g00608 Nelumbo nucifera HOM05D004823 ORTHO05D005814 3.3e-54 217.2 412 35.7
CSS0005414 Camellia sinensis var. sinensis HOM05D004823 ORTHO05D005814 5.7e-54 216.5 419 35.6
Cc00_g16960 Coffea canephora HOM05D004823 ORTHO05D005814 1.7e-53 214.9 413 35.1
Aqoxy5G01066 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 2.2e-53 214.5 411 37.0
Hma1.2p1_0601F.1_g187170 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 2.2e-53 214.5 379 36.4
QL04p025376 Quercus lobata HOM05D004823 ORTHO05D005814 2.2e-53 214.5 441 34.0
Atru.chr5.51 Acer truncatum HOM05D004823 ORTHO05D005814 2.8e-53 214.2 439 33.9
Actinidia33293 Actinidia chinensis HOM05D004823 ORTHO05D005814 1.4e-52 211.8 387 36.2
Aqoxy7G00645 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 1.4e-52 211.8 381 37.8
Hma1.2p1_0601F.1_g187160 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 4.1e-52 210.3 389 35.5
Nitab4.5_0013532g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 4.1e-52 210.3 414 35.0
vmacro21094 Vaccinium macrocarpon HOM05D004823 ORTHO05D005814 2.0e-51 208.0 389 36.0
Ciclev10018521m.g Citrus clementina HOM05D004823 ORTHO05D005814 3.5e-51 207.2 170 59.4
PSO782G4318 Papaver somniferum HOM05D004823 ORTHO05D005814 5.9e-51 206.5 413 35.6
Migut.B01471 Erythranthe guttata HOM05D004823 ORTHO05D005814 7.7e-51 206.1 408 35.0
Gohir.A05G333800 Gossypium hirsutum HOM05D004823 ORTHO05D005814 7.7e-51 206.1 181 55.8
Peaxi162Scf01124g00124 Petunia axillaris HOM05D004823 ORTHO05D005814 7.7e-51 206.1 410 35.9
Gohir.D04G072675 Gossypium hirsutum HOM05D004823 ORTHO05D005814 1.0e-50 205.7 403 35.7
TWI23G0233 Tripterygium wilfordii HOM05D004823 ORTHO05D005814 1.0e-50 205.7 408 34.3
Atru.chr5.23 Acer truncatum HOM05D004823 ORTHO05D005814 1.7e-50 204.9 165 58.2
CAN.G1480.3 Capsicum annuum HOM05D004823 ORTHO05D005814 1.7e-50 204.9 157 61.1
Nitab4.5_0006227g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 2.2e-50 204.5 383 36.6
CiPaw.14G012800 Carya illinoinensis HOM05D004823 ORTHO05D005814 2.9e-50 204.1 440 31.1
Haze_02925 Corylus avellana HOM05D004823 ORTHO05D005814 2.9e-50 204.1 286 42.0
Peaxi162Scf00417g00039 Petunia axillaris HOM05D004823 ORTHO05D005814 2.9e-50 204.1 410 35.6
TAR375G0889 Trochodendron aralioides HOM05D004823 ORTHO05D005814 2.9e-50 204.1 411 32.1
GSVIVG01018404001 Vitis vinifera HOM05D004823 ORTHO05D005814 8.5e-50 202.6 170 56.5
Gorai.012G081700 Gossypium raimondii HOM05D004823 ORTHO05D005814 1.1e-49 202.2 403 35.5
PSO063G2621 Papaver somniferum HOM05D004823 ORTHO05D005814 1.9e-49 201.4 413 34.9
Duzib106G1753 Durio zibethinus HOM05D004823 ORTHO05D005814 2.5e-49 201.1 397 34.3
Ca_04616_v3 Cicer arietinum L. HOM05D004823 ORTHO05D005814 3.2e-49 200.7 164 59.8
Potri.014G180200 Populus trichocarpa HOM05D004823 ORTHO05D005814 3.2e-49 200.7 381 37.3
Oeu034864.1 Olea europaea HOM05D004823 ORTHO05D005814 5.5e-49 199.9 412 34.2
Sopen01g035210 Solanum pennellii HOM05D004823 ORTHO05D005814 7.2e-49 199.5 413 34.6
Lj1g0025017 Lotus japonicus HOM05D004823 ORTHO05D005814 9.4e-49 199.1 171 56.7
Sc08g0006560 Simmondsia chinensis HOM05D004823 ORTHO05D005814 9.4e-49 199.1 404 32.9
Solyc01g088380.3 Solanum lycopersicum HOM05D004823 ORTHO05D005814 9.4e-49 199.1 388 35.3
AagrBONN_evm.TU.Sc2ySwM_362.2737 Anthoceros agrestis HOM05D004823 ORTHO05D005814 1.6e-48 198.4 165 58.2
Thecc.10G001100 Theobroma cacao HOM05D004823 ORTHO05D005814 1.6e-48 198.4 170 55.3
Mapoly0039s0120 Marchantia polymorpha HOM05D004823 ORTHO05D005814 2.7e-48 197.6 444 34.5
CANSAT21G1834 Cannabis sativa HOM05D004823 ORTHO05D005814 6.1e-48 196.4 160 59.4
Phvul.005G016100 Phaseolus vulgaris HOM05D004823 ORTHO05D005814 6.1e-48 196.4 163 59.5
Eucgr.D01139 Eucalyptus grandis HOM05D004823 ORTHO05D005814 1.0e-47 195.7 157 59.2
Manes.05G060200 Manihot esculenta HOM05D004823 ORTHO05D005814 1.8e-47 194.9 160 59.4
Psat3g163800 Pisum sativum HOM05D004823 ORTHO05D005814 2.3e-47 194.5 164 56.1
MD07G1085900 Malus domestica HOM05D004823 ORTHO05D005814 1.1e-46 192.2 157 58.0
Lsat_1_v5_gn_4_44681 Lactuca sativa HOM05D004823 ORTHO05D005814 2.0e-46 191.4 387 34.1
Sabra14G0140400 Salix brachista HOM05D004823 ORTHO05D005814 2.0e-46 191.4 207 49.3
Zm00001eb072560 Zea mays HOM05D004823 ORTHO05D005814 2.6e-46 191.0 176 51.7
AUR62023352 Chenopodium quinoa HOM05D004823 ORTHO05D005814 3.3e-46 190.7 208 47.6
Os04g0588200 Oryza sativa ssp. japonica HOM05D004823 ORTHO05D005814 3.3e-46 190.7 299 37.5
RcHm_v2.0_Chr1g0343241 Rosa chinensis HOM05D004823 ORTHO05D005814 5.7e-46 189.9 244 43.4
SGA_v2.0_scaffold578G53026 Striga asiatica HOM05D004823 ORTHO05D005814 7.5e-46 189.5 158 55.7
Hund17140 Selenicereus undatus HOM05D004823 ORTHO05D005814 1.3e-45 188.7 206 47.6
VMungo1080G1086 Vigna mungo HOM05D004823 ORTHO05D005814 1.3e-45 188.7 163 57.7
A09p65740 Brassica napus HOM05D004823 ORTHO05D005814 2.2e-45 188.0 183 48.1
BraA09t41917Z Brassica rapa HOM05D004823 ORTHO05D005814 2.2e-45 188.0 183 48.1
AUR62013806 Chenopodium quinoa HOM05D004823 ORTHO05D005814 2.2e-45 188.0 217 46.1
Sed0025177 Sechium edule HOM05D004823 ORTHO05D005814 2.2e-45 188.0 157 54.1
ECA234G1924 Erigeron canadensis HOM05D004823 ORTHO05D005814 2.8e-45 187.6 169 53.8
TPR.G14862 Trifolium pratense HOM05D004823 ORTHO05D005814 4.8e-45 186.8 164 56.7
EL10Ac8g19253 Beta vulgaris HOM05D004823 ORTHO05D005814 8.2e-45 186.0 193 48.7
C08p49810 Brassica napus HOM05D004823 ORTHO05D005814 8.2e-45 186.0 175 49.1
BolC8t52508H Brassica oleracea HOM05D004823 ORTHO05D005814 8.2e-45 186.0 175 49.1
Aa31sc17G210 Aethionema arabicum HOM05D004823 ORTHO05D005814 1.1e-44 185.7 162 53.1
BcaC07g41923 Brassica carinata HOM05D004823 ORTHO05D005814 1.1e-44 185.7 183 48.1
CsaV3_3G010270 Cucumis sativus L. HOM05D004823 ORTHO05D005814 1.4e-44 185.3 157 56.1
Medtr7g034575 Medicago truncatula HOM05D004823 ORTHO05D005814 1.4e-44 185.3 157 56.1
Ah.15g091500 Amaranthus hybridus HOM05D004823 ORTHO05D005814 2.4e-44 184.5 160 55.6
Carub.0001s0819 Capsella rubella HOM05D004823 ORTHO05D005814 3.1e-44 184.1 165 52.7
Sp1g07480 Schrenkiella parvula HOM05D004823 ORTHO05D005814 3.1e-44 184.1 175 49.7
Glyma.06G310500 Glycine max HOM05D004823 ORTHO05D005814 5.3e-44 183.3 158 56.3
CARHR008760 Cardamine hirsuta HOM05D004823 ORTHO05D005814 1.2e-43 182.2 173 50.3
Thhalv10006571m.g Eutrema salsugineum HOM05D004823 ORTHO05D005814 2.0e-43 181.4 175 48.6
Rhsim01G0145100 Rhododendron simsii HOM05D004823 ORTHO05D005814 2.0e-43 181.4 382 33.5
AT1G08840 Arabidopsis thaliana HOM05D004823 ORTHO05D005814 2.7e-43 181.0 165 49.1
Prupe.2G112200 Prunus persica HOM05D004823 ORTHO05D005814 2.7e-43 181.0 158 55.1
PGR083G0266 Punica granatum HOM05D004823 ORTHO05D005814 2.7e-43 181.0 165 53.3
arahy.Tifrunner.gnm1.ann1.GG1KFP Arachis hypogaea HOM05D004823 ORTHO05D005814 4.5e-43 180.3 159 56.0
ClCG05G002760 Citrullus lanatus HOM05D004823 ORTHO05D005814 5.9e-43 179.9 157 55.4
DCAR_029534 Daucus carota HOM05D004823 ORTHO05D005814 7.7e-43 179.5 293 38.2
HanXRQChr08g0226321 Helianthus annuus HOM05D004823 ORTHO05D005814 1.0e-42 179.1 167 52.1
arahy.Tifrunner.gnm1.ann1.61K3Y7 Arachis hypogaea HOM05D004823 ORTHO05D005814 1.3e-42 178.7 159 56.0
COL.COLO4_19317 Corchorus olitorius HOM05D004823 ORTHO05D005814 1.7e-42 178.3 375 34.9
FvH4_7g08480 Fragaria vesca HOM05D004823 ORTHO05D005814 1.7e-42 178.3 212 44.3
THA.LOC104808236 Tarenaya hassleriana HOM05D004823 ORTHO05D005814 2.9e-42 177.6 391 30.9
AL1G19270 Arabidopsis lyrata HOM05D004823 ORTHO05D005814 5.0e-42 176.8 163 48.5
MD02G1227500 Malus domestica HOM05D004823 ORTHO05D005814 8.0e-40 169.5 298 36.9
FAN03G0722 Fragaria x ananassa HOM05D004823 ORTHO05D005814 1.8e-39 168.3 214 43.5
HPP92_003322 Vanilla planifolia HOM05D004823 ORTHO05D005814 3.0e-39 167.5 152 49.3
MELO3C006248.2 Cucumis melo HOM05D004823 ORTHO05D005814 5.2e-39 166.8 157 51.6
FAN06G0930 Fragaria x ananassa HOM05D004823 ORTHO05D005814 8.8e-39 166.0 227 41.4
FAN10G1986 Fragaria x ananassa HOM05D004823 ORTHO05D005814 1.2e-38 165.6 230 40.4
Lj7C553G7 Lonicera japonica HOM05D004823 ORTHO05D005814 3.7e-37 160.6 123 57.7
FAN10G0616 Fragaria x ananassa HOM05D004823 ORTHO05D005814 1.4e-36 158.7 211 44.1
HPP92_003323 Vanilla planifolia HOM05D004823 ORTHO05D005814 2.0e-35 154.8 134 50.7
unitig_8.g3844 Utricularia gibba HOM05D004823 ORTHO05D005814 3.5e-35 154.1 149 51.0
SHI13672 Sapria himalayana HOM05D004823 ORTHO05D005814 2.2e-34 151.4 203 41.9
CBR_g41486 Chara braunii HOM05D004823 ORTHO05D005814 6.5e-34 149.8 164 50.0
CDE11G0754 Ceratophyllum demersum HOM05D004823 ORTHO05D005814 1.5e-33 148.7 126 57.1
SEGI_35755 Sequoiadendron giganteum HOM05D000290 ORTHO05D009072 3.4e-30 137.5 67 94.0
SEGI_36333 Sequoiadendron giganteum HOM05D000234 ORTHO05D000335 9.2e-28 129.4 166 44.0
Cpa.g.sc10.21 Carica papaya HOM05D004823 ORTHO05D005814 1.6e-27 128.6 164 40.9
SEGI_08298 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 1.6e-27 128.6 63 93.7
MBI13_g01094_MAGBIO Magnolia biondii HOM05D002050 ORTHO05D001949 5.2e-23 113.6 80 58.8
Psat2g050440 Pisum sativum HOM05D004823 ORTHO05D036791 6.8e-23 113.2 94 55.3
Psat5g098920 Pisum sativum HOM05D004823 ORTHO05D005814 8.9e-23 112.8 86 58.1
Psat2g050360 Pisum sativum HOM05D004823 ORTHO05D005814 1.2e-22 112.5 94 54.3
SEGI_08738 Sequoiadendron giganteum HOM05D000877 ORTHO05D005814 4.4e-22 110.5 62 83.9
Cc07_g20090 Coffea canephora HOM05D004823 ORTHO05D005814 8.3e-21 106.3 98 51.0
MBI05_g27233_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 1.6e-19 102.1 72 56.9
MBI17_g09706_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 7.8e-19 99.8 61 63.9
RcHm_v2.0_Chr2g0122961 Rosa chinensis HOM05D004823 ORTHO05D005814 3.0e-18 97.8 75 62.7
SEGI_10475 Sequoiadendron giganteum HOM05D003439 ORTHO05D004062 2.5e-17 94.7 46 93.5
SEGI_07482 Sequoiadendron giganteum HOM05D000707 ORTHO05D004608 3.3e-17 94.4 60 68.3
MBI08_g06419_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 7.3e-17 93.2 60 60.0
MBI08_g07078_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 2.1e-16 91.7 56 62.5
Cfa026676 Carpinus fangiana HOM05D004823 ORTHO05D005814 8.0e-16 89.7 149 35.6
SEGI_06725 Sequoiadendron giganteum HOM05D000702 ORTHO05D001396 8.9e-15 86.3 41 92.7
Lalb_Chr03g0040711 Lupinus albus HOM05D004823 ORTHO05D005814 1.5e-14 85.5 72 56.9
Cre12.g528200 Chlamydomonas reinhardtii HOM05D004823 ORTHO05D005814 1.2e-11 75.9 138 33.3
PRCOL_00002243 Prasinoderma coloniale HOM05D004823 ORTHO05D005814 1.2e-11 75.9 125 34.4
SEGI_21834 Sequoiadendron giganteum HOM05D006301 ORTHO05D000646 1.7e-10 72.0 49 67.3
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.0e-10 70.5 43 67.4
MBI15_g07200_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 6.6e-10 70.1 40 62.5
arahy.Tifrunner.gnm1.ann1.3YFD1D Arachis hypogaea HOM05D000922 ORTHO05D005814 1.5e-09 68.9 69 49.3


User provided reference genes

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