Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_23665 Sequoiadendron giganteum HOM05D004303 ORTHO05D005111 4.0e-69 264.6 130 100.0
Sc04g0004040 Simmondsia chinensis HOM05D004303 ORTHO05D005111 1.1e-37 160.2 108 72.2
CDE02G0244 Ceratophyllum demersum HOM05D004303 ORTHO05D005111 2.3e-37 159.1 108 72.2
Nn4g23618 Nelumbo nucifera HOM05D004303 ORTHO05D005111 5.2e-37 157.9 108 69.4
TWI81G0997 Tripterygium wilfordii HOM05D004303 ORTHO05D005111 1.2e-36 156.8 108 69.4
Nn3g17611 Nelumbo nucifera HOM05D004303 ORTHO05D005111 1.5e-36 156.4 108 68.5
CAN.G982.24 Capsicum annuum HOM05D004303 ORTHO05D005111 2.6e-36 155.6 108 67.6
PGSC0003DMG400024512 Solanum tuberosum HOM05D004303 ORTHO05D005111 3.4e-36 155.2 108 67.6
Peaxi162Scf00017g03129 Petunia axillaris HOM05D004303 ORTHO05D005111 5.8e-36 154.5 108 66.7
Cpa.g.sc3.248 Carica papaya HOM05D004303 ORTHO05D005111 7.5e-36 154.1 107 67.3
MBI15_g18196_MAGBIO Magnolia biondii HOM05D004303 ORTHO05D005111 7.5e-36 154.1 108 69.4
Actinidia01416 Actinidia chinensis HOM05D004303 ORTHO05D005111 9.8e-36 153.7 108 66.7
Gohir.A03G073300 Gossypium hirsutum HOM05D004303 ORTHO05D005111 1.7e-35 152.9 108 67.6
Oeu006090.1 Olea europaea HOM05D004303 ORTHO05D005111 1.7e-35 152.9 108 67.6
Dinv38618 Davidia involucrata HOM05D004303 ORTHO05D005111 2.2e-35 152.5 108 66.7
Glyma.17G083200 Glycine max HOM05D004303 ORTHO05D005111 2.2e-35 152.5 108 68.5
Glyma.17G083500 Glycine max HOM05D004303 ORTHO05D005111 2.2e-35 152.5 108 68.5
Hma1.2p1_0744F.1_g211660 Hydrangea macrophylla HOM05D004303 ORTHO05D005111 2.2e-35 152.5 119 63.0
Potri.008G110100 Populus trichocarpa HOM05D004303 ORTHO05D005111 2.2e-35 152.5 108 67.6
Duzib068G1178 Durio zibethinus HOM05D004303 ORTHO05D005111 2.9e-35 152.1 108 67.6
Peaxi162Scf00119g00023 Petunia axillaris HOM05D004303 ORTHO05D005111 2.9e-35 152.1 106 68.9
PGR083G1561 Punica granatum HOM05D004303 ORTHO05D005111 2.9e-35 152.1 108 65.7
Atru.chr9.676 Acer truncatum HOM05D004303 ORTHO05D005111 3.7e-35 151.8 108 65.7
TWI15G0058 Tripterygium wilfordii HOM05D004303 ORTHO05D005111 3.7e-35 151.8 108 65.7
Aqoxy3G03805 Aquilegia oxysepala HOM05D004303 ORTHO05D005111 4.9e-35 151.4 108 66.7
CSS0021723 Camellia sinensis var. sinensis HOM05D004303 ORTHO05D005111 4.9e-35 151.4 108 67.6
CSS0025703 Camellia sinensis var. sinensis HOM05D004303 ORTHO05D005111 4.9e-35 151.4 108 67.6
Haze_05825 Corylus avellana HOM05D004303 ORTHO05D005111 4.9e-35 151.4 108 66.7
Gohir.D07G062300 Gossypium hirsutum HOM05D004303 ORTHO05D005111 4.9e-35 151.4 108 67.6
AUR62032159 Chenopodium quinoa HOM05D004303 ORTHO05D005111 8.3e-35 150.6 108 65.7
AUR62036915 Chenopodium quinoa HOM05D004303 ORTHO05D005111 8.3e-35 150.6 108 65.7
Glyma.05G016600 Glycine max HOM05D004303 ORTHO05D005111 8.3e-35 150.6 108 66.7
Glyma.05G016800 Glycine max HOM05D004303 ORTHO05D005111 8.3e-35 150.6 108 66.7
MD06G1207900 Malus domestica HOM05D004303 ORTHO05D005111 8.3e-35 150.6 108 65.7
Phvul.006G060900 Phaseolus vulgaris HOM05D004303 ORTHO05D005111 8.3e-35 150.6 108 64.8
Prupe.5G212100 Prunus persica HOM05D004303 ORTHO05D005111 8.3e-35 150.6 108 66.7
Hund07257 Selenicereus undatus HOM05D004303 ORTHO05D005111 8.3e-35 150.6 108 69.4
Gohir.A07G057500 Gossypium hirsutum HOM05D004303 ORTHO05D005111 1.1e-34 150.2 108 66.7
Gohir.A12G185000 Gossypium hirsutum HOM05D004303 ORTHO05D005111 1.1e-34 150.2 108 65.7
Gorai.001G065800 Gossypium raimondii HOM05D004303 ORTHO05D005111 1.1e-34 150.2 108 66.7
Nitab4.5_0007617g0030 Nicotiana tabacum HOM05D004303 ORTHO05D005111 1.1e-34 150.2 108 66.7
Os02g0728600 Oryza sativa ssp. japonica HOM05D004303 ORTHO05D005111 1.1e-34 150.2 108 68.5
Hund09978 Selenicereus undatus HOM05D004303 ORTHO05D005111 1.1e-34 150.2 108 67.6
PGSC0003DMG400000654 Solanum tuberosum HOM05D004303 ORTHO05D005111 1.1e-34 150.2 108 67.6
Actinidia10427 Actinidia chinensis HOM05D004303 ORTHO05D005111 1.4e-34 149.8 108 65.7
Eucgr.K02637 Eucalyptus grandis HOM05D004303 ORTHO05D005111 1.4e-34 149.8 108 66.7
Lj5A139T83 Lonicera japonica HOM05D004303 ORTHO05D005111 1.4e-34 149.8 108 64.8
Manes.01G023700 Manihot esculenta HOM05D004303 ORTHO05D005111 1.4e-34 149.8 108 66.7
Sopen12g019210 Solanum pennellii HOM05D004303 ORTHO05D005111 1.4e-34 149.8 108 66.7
Actinidia35062 Actinidia chinensis HOM05D004303 ORTHO05D005111 1.9e-34 149.4 108 64.8
CSS0017037 Camellia sinensis var. sinensis HOM05D004303 ORTHO05D005111 1.9e-34 149.4 108 67.6
Gohir.D03G099800 Gossypium hirsutum HOM05D004303 ORTHO05D005111 1.9e-34 149.4 108 66.7
Gorai.003G104900 Gossypium raimondii HOM05D004303 ORTHO05D005111 1.9e-34 149.4 108 66.7
Manes.05G116100 Manihot esculenta HOM05D004303 ORTHO05D005111 1.9e-34 149.4 108 64.8
TPR.G23901 Trifolium pratense HOM05D004303 ORTHO05D005111 1.9e-34 149.4 108 64.8
Hma1.2p1_0595F.1_g186190 Hydrangea macrophylla HOM05D004303 ORTHO05D005111 2.4e-34 149.1 108 65.7
Nitab4.5_0000208g0070 Nicotiana tabacum HOM05D004303 ORTHO05D005111 2.4e-34 149.1 108 66.7
QL10p021882 Quercus lobata HOM05D004303 ORTHO05D005111 2.4e-34 149.1 107 66.4
VMungo0540G1331 Vigna mungo HOM05D004303 ORTHO05D005111 2.4e-34 149.1 108 63.9
CANSAT80G0949 Cannabis sativa HOM05D004303 ORTHO05D005111 3.2e-34 148.7 108 65.7
COL.COLO4_07341 Corchorus olitorius HOM05D004303 ORTHO05D005111 3.2e-34 148.7 108 64.8
Solyc12g038980.2 Solanum lycopersicum HOM05D004303 ORTHO05D005111 3.2e-34 148.7 108 66.7
CiPaw.15G118200 Carya illinoinensis HOM05D004303 ORTHO05D005111 4.1e-34 148.3 108 66.7
THA.LOC104813898 Tarenaya hassleriana HOM05D004303 ORTHO05D005111 4.1e-34 148.3 106 67.0
Eucgr.B00661 Eucalyptus grandis HOM05D004303 ORTHO05D005111 5.4e-34 147.9 108 66.7
arahy.Tifrunner.gnm1.ann1.D9VBSN Arachis hypogaea HOM05D004303 ORTHO05D005111 7.0e-34 147.5 108 63.0
EL10Ac9g20982 Beta vulgaris HOM05D004303 ORTHO05D005111 7.0e-34 147.5 108 64.8
Cfa000816 Carpinus fangiana HOM05D004303 ORTHO05D005111 7.0e-34 147.5 108 65.7
Ciclev10022644m.g Citrus clementina HOM05D004303 ORTHO05D005111 7.0e-34 147.5 108 66.7
Duzib205G1691 Durio zibethinus HOM05D004303 ORTHO05D005111 7.0e-34 147.5 108 65.7
Nitab4.5_0002805g0120 Nicotiana tabacum HOM05D004303 ORTHO05D005111 7.0e-34 147.5 88 77.3
Psat4g043960 Pisum sativum HOM05D004303 ORTHO05D005111 7.0e-34 147.5 108 63.9
DCAR_011328 Daucus carota HOM05D004303 ORTHO05D005111 9.2e-34 147.1 108 63.0
Os06g0274200 Oryza sativa ssp. japonica HOM05D004303 ORTHO05D005111 9.2e-34 147.1 108 64.8
SGA_v2.0_scaffold56G19909 Striga asiatica HOM05D004303 ORTHO05D005111 9.2e-34 147.1 108 64.8
THA.LOC104818364 Tarenaya hassleriana HOM05D004303 ORTHO05D005111 9.2e-34 147.1 108 62.0
Cc04_g07910 Coffea canephora HOM05D004303 ORTHO05D005111 1.2e-33 146.7 108 63.9
arahy.Tifrunner.gnm1.ann1.2D0TFY Arachis hypogaea HOM05D004303 ORTHO05D005111 1.6e-33 146.4 108 62.0
Migut.F00522 Erythranthe guttata HOM05D004303 ORTHO05D005111 1.6e-33 146.4 108 63.0
Zm00001eb253410 Zea mays HOM05D004303 ORTHO05D005111 1.6e-33 146.4 108 65.7
PSO478G3765 Papaver somniferum HOM05D004303 ORTHO05D005111 2.1e-33 146.0 108 64.8
GSVIVG01008187001 Vitis vinifera HOM05D004303 ORTHO05D005111 2.1e-33 146.0 108 63.0
RcHm_v2.0_Chr7g0184101 Rosa chinensis HOM05D004303 ORTHO05D005111 2.7e-33 145.6 105 66.7
Zm00001eb189860 Zea mays HOM05D004303 ORTHO05D005111 2.7e-33 145.6 108 65.7
Lj4g0013167 Lotus japonicus HOM05D004303 ORTHO05D005111 3.5e-33 145.2 108 62.0
HanXRQChr16g0502001 Helianthus annuus HOM05D004303 ORTHO05D005111 6.0e-33 144.4 108 63.0
C02p03440 Brassica napus HOM05D004303 ORTHO05D005111 7.8e-33 144.1 108 63.0
BolC2t06305H Brassica oleracea HOM05D004303 ORTHO05D005111 7.8e-33 144.1 108 63.0
BraA02t04944Z Brassica rapa HOM05D004303 ORTHO05D005111 7.8e-33 144.1 108 63.0
HanXRQChr04g0109871 Helianthus annuus HOM05D004303 ORTHO05D005111 7.8e-33 144.1 108 63.0
MD14G1218300 Malus domestica HOM05D004303 ORTHO05D005111 7.8e-33 144.1 108 63.9
Rhsim03G0138600 Rhododendron simsii HOM05D000136 ORTHO05D005111 7.8e-33 144.1 108 63.9
SalBow3G0492 Salvia bowleyana HOM05D004303 ORTHO05D005111 7.8e-33 144.1 106 61.3
SGA_v2.0_scaffold136G35037 Striga asiatica HOM05D004303 ORTHO05D005111 7.8e-33 144.1 108 63.0
Thhalv10019273m.g Eutrema salsugineum HOM05D004303 ORTHO05D005111 1.0e-32 143.7 105 64.8
FAN13G2397 Fragaria x ananassa HOM05D004303 ORTHO05D005111 1.0e-32 143.7 105 64.8
Lalb_Chr12g0197441 Lupinus albus HOM05D004303 ORTHO05D005111 1.0e-32 143.7 108 62.0
Lalb_Chr13g0302591 Lupinus albus HOM05D004303 ORTHO05D005111 1.0e-32 143.7 108 62.0
Sp6g34770 Schrenkiella parvula HOM05D004303 ORTHO05D005111 1.0e-32 143.7 108 63.0
CsaV3_1G006340 Cucumis sativus L. HOM05D004303 ORTHO05D005111 1.3e-32 143.3 108 63.9
unitig_85.g27170 Utricularia gibba HOM05D004303 ORTHO05D005111 1.3e-32 143.3 108 59.3
Migut.O00371 Erythranthe guttata HOM05D004303 ORTHO05D005111 1.7e-32 142.9 108 62.0
FvH4_5g13030 Fragaria vesca HOM05D004303 ORTHO05D005111 1.7e-32 142.9 105 64.8
FAN08G1874 Fragaria x ananassa HOM05D004303 ORTHO05D005111 1.7e-32 142.9 105 64.8
Nitab4.5_0000646g0150 Nicotiana tabacum HOM05D004303 ORTHO05D005111 1.7e-32 142.9 90 76.7
PSO017G4057 Papaver somniferum HOM05D004303 ORTHO05D005111 1.7e-32 142.9 108 63.0
C09p68770 Brassica napus HOM05D004303 ORTHO05D005111 2.3e-32 142.5 108 61.1
BolC9t59624H Brassica oleracea HOM05D004303 ORTHO05D005111 2.3e-32 142.5 108 61.1
CARHR205000 Cardamine hirsuta HOM05D004303 ORTHO05D005111 2.3e-32 142.5 108 62.0
Thhalv10014911m.g Eutrema salsugineum HOM05D004303 ORTHO05D005111 2.3e-32 142.5 108 62.0
ClCG04G011460 Citrullus lanatus HOM05D004303 ORTHO05D005111 3.0e-32 142.1 108 63.0
MELO3C002060.2 Cucumis melo HOM05D004303 ORTHO05D005111 3.0e-32 142.1 108 63.0
Lsat_1_v5_gn_2_112741 Lactuca sativa HOM05D004303 ORTHO05D005111 3.0e-32 142.1 108 63.0
unitig_578.g16618 Utricularia gibba HOM05D004303 ORTHO05D005111 3.0e-32 142.1 108 58.3
Aa31LG3G18360 Aethionema arabicum HOM05D004303 ORTHO05D005111 3.9e-32 141.7 108 61.1
MSTRG.140 Avicennia marina HOM05D004303 ORTHO05D005111 3.9e-32 141.7 108 61.1
FAN18G4307 Fragaria x ananassa HOM05D004303 ORTHO05D005111 3.9e-32 141.7 105 63.8
Lsat_1_v5_gn_1_15581 Lactuca sativa HOM05D004303 ORTHO05D005111 3.9e-32 141.7 108 63.0
HPP92_019461 Vanilla planifolia HOM05D004303 ORTHO05D005111 3.9e-32 141.7 108 61.1
A10p28490 Brassica napus HOM05D004303 ORTHO05D005111 5.1e-32 141.4 108 60.2
Sed0008635 Sechium edule HOM05D004303 ORTHO05D005111 5.1e-32 141.4 108 63.0
Sed0020101 Sechium edule HOM05D004303 ORTHO05D005111 5.1e-32 141.4 108 64.8
vmacro17653 Vaccinium macrocarpon HOM05D004303 ORTHO05D005111 6.6e-32 141.0 89 76.4
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 8.6e-32 140.6 105 61.9
Medtr4g112780 Medicago truncatula HOM05D004303 ORTHO05D005111 8.6e-32 140.6 108 61.1
Aa31LG4G4290 Aethionema arabicum HOM05D004303 ORTHO05D005111 1.1e-31 140.2 105 60.0
C03p04160 Brassica napus HOM05D004303 ORTHO05D005111 1.1e-31 140.2 108 60.2
Thecc.03G113000 Theobroma cacao HOM05D004303 ORTHO05D005111 1.1e-31 140.2 99 65.7
A03p03670 Brassica napus HOM05D004303 ORTHO05D005111 1.5e-31 139.8 108 60.2
BraA10t44897Z Brassica rapa HOM05D004303 ORTHO05D005111 1.9e-31 139.4 108 59.3
AL6G18570 Arabidopsis lyrata HOM05D004303 ORTHO05D005111 3.3e-31 138.7 108 59.3
Mapoly0013s0057 Marchantia polymorpha HOM05D004303 ORTHO05D005111 3.3e-31 138.7 103 64.1
TAR374G1019 Trochodendron aralioides HOM05D004303 ORTHO05D005111 3.3e-31 138.7 126 57.9
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 4.3e-31 138.3 104 61.5
AT5G08180 Arabidopsis thaliana HOM05D004303 ORTHO05D005111 5.6e-31 137.9 108 59.3
Dinv36843 Davidia involucrata HOM05D004303 ORTHO05D005111 7.3e-31 137.5 94 67.0
ECA247G0323 Erigeron canadensis HOM05D004303 ORTHO05D005111 7.3e-31 137.5 108 60.2
TAR371G0534 Trochodendron aralioides HOM05D000168 ORTHO05D000811 1.2e-30 136.7 106 58.5
BolC3t12947H Brassica oleracea HOM05D004303 ORTHO05D005111 2.1e-30 136.0 110 60.0
Carub.0006s0708 Capsella rubella HOM05D004303 ORTHO05D005111 2.1e-30 136.0 106 57.5
BraA03t09715Z Brassica rapa HOM05D004303 ORTHO05D005111 2.8e-30 135.6 110 60.0
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 3.6e-30 135.2 99 64.6
CARHR067100 Cardamine hirsuta HOM05D004303 ORTHO05D005111 1.4e-29 133.3 105 60.0
CSS0024388 Camellia sinensis var. sinensis HOM05D004303 ORTHO05D005111 2.3e-29 132.5 108 62.0
Pp3c15_25080 Physcomitrium patens HOM05D004303 ORTHO05D005111 2.6e-28 129.0 102 61.8
Pp3c9_25980 Physcomitrium patens HOM05D004303 ORTHO05D005111 9.9e-28 127.1 102 60.8
SHI18990 Sapria himalayana HOM05D004303 ORTHO05D005111 2.9e-27 125.6 84 70.2
CBR_g38468 Chara braunii HOM05D004303 ORTHO05D005111 3.7e-27 125.2 97 57.7
CBR_g8989 Chara braunii HOM05D004303 ORTHO05D005111 1.4e-26 123.2 97 57.7
MBI14_g04838_MAGBIO Magnolia biondii HOM05D004303 ORTHO05D005111 2.4e-26 122.5 108 58.3
MBI09_g33806_MAGBIO Magnolia biondii HOM05D004303 ORTHO05D005111 3.2e-26 122.1 99 63.6
Gohir.D12G187950 Gossypium hirsutum HOM05D004303 ORTHO05D005111 2.1e-25 119.4 77 72.7
Gorai.008G201400 Gossypium raimondii HOM05D004303 ORTHO05D005111 2.1e-25 119.4 77 72.7
AagrBONN_evm.TU.Sc2ySwM_228.4029 Anthoceros agrestis HOM05D004303 ORTHO05D005111 4.6e-25 118.2 148 43.2
SMO147G0181 Selaginella moellendorffii HOM05D004303 ORTHO05D005111 6.0e-25 117.9 106 54.7
BraA07t31529Z Brassica rapa HOM05D006581 ORTHO05D007870 1.1e-23 113.6 81 70.4
MCO05G309 Micromonas commoda HOM05D004303 ORTHO05D005111 2.5e-23 112.5 99 55.6
Sabra10G0102900 Salix brachista HOM05D004303 ORTHO05D005111 3.3e-23 112.1 101 59.4
CDE04G3448 Ceratophyllum demersum HOM05D004303 ORTHO05D005111 1.1e-21 107.1 77 67.5
MBI19_g02720_MAGBIO Magnolia biondii HOM05D004303 ORTHO05D005111 1.8e-21 106.3 66 78.8
BcaC05g25435 Brassica carinata HOM05D004303 ORTHO05D005111 6.8e-21 104.4 73 65.8
C05p13100 Brassica napus HOM05D004303 ORTHO05D005111 6.8e-21 104.4 73 65.8
Cre16.g690500 Chlamydomonas reinhardtii HOM05D004303 ORTHO05D005111 6.8e-21 104.4 122 45.1
ATR0691G181 Amborella trichopoda HOM05D004303 ORTHO05D005111 8.1e-14 80.9 57 63.2
Cfa026277 Carpinus fangiana HOM05D004303 ORTHO05D005111 6.4e-11 71.2 87 37.9
Hma1.2p1_0340F.1_g130230 Hydrangea macrophylla HOM05D004303 ORTHO05D005111 2.3e-08 62.8 96 40.6
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 3.3e-07 58.9 38 73.7


User provided reference genes

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