Gene: AT5G08180

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G08180
  • Transcript Identifier AT5G08180.2
  • Gene Type Coding gene
  • Location Chr5 : 2631843-2633374 : negative

Gene Family Information

  • ID HOM05D004303
  • #Genes/#Species 165/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G08180.2
  • uniprot Q9LEY9

Descriptions

  • Description Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
  • Computational description Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote (InterPro:IPR002415), Ribosomal protein L7Ae/L8/Nhp2 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT5G20160.1); Has 2065 Blast hits to 2065 proteins in 412 species: Archae - 342; Bacteria - 0; Metazoa - 661; Fungi - 409; Plants - 241; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).
  • Computational description Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote (InterPro:IPR002415), Ribosomal protein L7Ae/L8/Nhp2 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT5G20160.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031118
ISS, IBA
Gene OntologyrRNA pseudouridine synthesis1
GO:0042254
IEA
GOA Databaseribosome biogenesis
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0000470
IBA
Gene Ontologymaturation of LSU-rRNA1
GO:0031120
IBA
Gene OntologysnRNA pseudouridine synthesis1
GO:0000469
IBA
Gene Ontologycleavage involved in rRNA processing1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003723
IEA
InterProRNA binding
GO:0034513
IBA
Gene Ontologybox H/ACA snoRNA binding1
GO:0003729
IDA
Gene OntologymRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IDA
IEA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus3
GO:0005730
IEA
InterPronucleolus
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0031429
IBA
Gene Ontologybox H/ACA snoRNP complex1
GO:0005732
ISS
Gene Ontologysno(s)RNA-containing ribonucleoprotein complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029064 50S ribosomal protein L30e-like
IPR018492 Ribosomal protein L7Ae/L8/Nhp2 family
IPR002415 H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45
Mapman id Description
16.2.1.3.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (NHP2L1/SNU13)