Gene: Pp3c9_25980

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c9_25980
  • Transcript Identifier Pp3c9_25980V3.1
  • Gene Type Coding gene
  • Location Chr09 : 17643327-17644639 : negative

Gene Family Information

  • ID HOM05D004303
  • #Genes/#Species 165/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c9_25980V3.1
  • pacid 32914311
  • alias Phpat.009G097700
  • alias Pp1s131_177V6
  • alias Phypa_53765
  • uniprot A0A2K1K4N0

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042254
IEA
GOA Databaseribosome biogenesis
GO:0031118
IBA
GOA DatabaserRNA pseudouridine synthesis
GO:0031120
IBA
GOA DatabasesnRNA pseudouridine synthesis
GO:0000469
IBA
GOA Databasecleavage involved in rRNA processing
GO:0000470
IBA
GOA Databasematuration of LSU-rRNA

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0034513
IBA
GOA Databasebox H/ACA snoRNA binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G08180

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IEA
InterPronucleolus
GO:0005634
IEA
GOA Databasenucleus
GO:1990904
IEA
GOA Databaseribonucleoprotein complex
GO:0031429
IBA
GOA Databasebox H/ACA snoRNP complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR029064 50S ribosomal protein L30e-like
IPR018492 Ribosomal protein L7Ae/L8/Nhp2 family
IPR002415 H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
Mapman id Description
16.2.1.3.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (NHP2L1/SNU13)