Gene: Solyc12g038980.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc12g038980.2
  • Transcript Identifier Solyc12g038980.2.1
  • Gene Type Coding gene
  • Location SL4.0ch12 : 51310452-51312189 : negative

Gene Family Information

  • ID HOM05D004303
  • #Genes/#Species 165/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc12g038980.2.1
  • uniprot A0A3Q7J8N7
  • gene_id Solyc12g038980

Descriptions

  • Description H/ACA ribonucleoprotein complex subunit 2-like protein (AHRD V3.3 *** A0A2G3A1U0_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031118
IBA
GOA DatabaserRNA pseudouridine synthesis
GO:0031120
IBA
GOA DatabasesnRNA pseudouridine synthesis
GO:0000469
IBA
GOA Databasecleavage involved in rRNA processing
GO:0000470
IBA
GOA Databasematuration of LSU-rRNA

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0034513
IBA
GOA Databasebox H/ACA snoRNA binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G08180

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IEA
InterPronucleolus
GO:0005634
IEA
GOA Databasenucleus
GO:0031429
IBA
GOA Databasebox H/ACA snoRNP complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002415 H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
IPR029064 50S ribosomal protein L30e-like
IPR018492 Ribosomal protein L7Ae/L8/Nhp2 family
IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45
Mapman id Description
16.2.1.3.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (NHP2L1/SNU13)