Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16272 Sequoiadendron giganteum HOM05D001045 ORTHO05D004836 1.0e-171 606.7 306 100.0
BolC3t18571H Brassica oleracea HOM05D001045 ORTHO05D004836 3.2e-21 106.7 165 38.2
C03p63160 Brassica napus HOM05D001045 ORTHO05D004836 4.2e-21 106.3 165 38.2
MBI11_g06773_MAGBIO Magnolia biondii HOM05D001045 ORTHO05D004836 5.5e-21 105.9 83 57.8
Sed0018235 Sechium edule HOM05D001045 ORTHO05D004836 9.4e-21 105.1 83 59.0
Sc04g0000750 Simmondsia chinensis HOM05D001045 ORTHO05D004836 2.1e-20 104.0 150 38.0
AUR62029637 Chenopodium quinoa HOM05D001045 ORTHO05D004836 3.6e-20 103.2 143 43.4
BcaC01g02587 Brassica carinata HOM05D001045 ORTHO05D004836 4.7e-20 102.8 165 37.0
AUR62025919 Chenopodium quinoa HOM05D001045 ORTHO05D004836 6.1e-20 102.4 171 40.4
MELO3C026230.2 Cucumis melo HOM05D001045 ORTHO05D004836 6.1e-20 102.4 80 60.0
CsaV3_1G000660 Cucumis sativus L. HOM05D001045 ORTHO05D004836 6.1e-20 102.4 75 61.3
MBI16_g26173_MAGBIO Magnolia biondii HOM05D001045 ORTHO05D004836 6.1e-20 102.4 83 56.6
ClCG06G017790 Citrullus lanatus HOM05D001045 ORTHO05D004836 8.0e-20 102.1 83 56.6
Sp2g26510 Schrenkiella parvula HOM05D001045 ORTHO05D004836 1.0e-19 101.7 176 36.9
Sopen03g030390 Solanum pennellii HOM05D001045 ORTHO05D004836 1.0e-19 101.7 72 62.5
ATR0680G066 Amborella trichopoda HOM05D001045 ORTHO05D004836 1.4e-19 101.3 93 52.7
Eucgr.B00129 Eucalyptus grandis HOM05D001045 ORTHO05D004836 1.8e-19 100.9 85 57.6
Solyc03g111260.3 Solanum lycopersicum HOM05D001045 ORTHO05D004836 1.8e-19 100.9 72 62.5
PGSC0003DMG401015244 Solanum tuberosum HOM05D001045 ORTHO05D004836 1.8e-19 100.9 72 62.5
GSVIVG01008515001 Vitis vinifera HOM05D001045 ORTHO05D004836 1.8e-19 100.9 89 52.8
A06p30050 Brassica napus HOM05D001045 ORTHO05D004836 2.3e-19 100.5 191 34.6
BraA06t25957Z Brassica rapa HOM05D001045 ORTHO05D004836 2.3e-19 100.5 191 34.6
Peaxi162Scf00089g00522 Petunia axillaris HOM05D001045 ORTHO05D004836 2.3e-19 100.5 68 67.6
Sabra12G0070200 Salix brachista HOM05D001045 ORTHO05D004836 2.3e-19 100.5 71 63.4
AL8G40490 Arabidopsis lyrata HOM05D001045 ORTHO05D004836 3.0e-19 100.1 110 46.4
TAR371G0766 Trochodendron aralioides HOM05D001045 ORTHO05D004836 3.0e-19 100.1 93 50.5
Atru.chr9.1079 Acer truncatum HOM05D001045 ORTHO05D004836 4.0e-19 99.8 89 53.9
Oeu030250.2 Olea europaea HOM05D001045 ORTHO05D004836 4.0e-19 99.8 88 54.5
TAR629G1776 Trochodendron aralioides HOM05D001045 ORTHO05D004836 4.0e-19 99.8 120 44.2
Aa31LG1G18610 Aethionema arabicum HOM05D001045 ORTHO05D004836 5.2e-19 99.4 173 35.8
AT5G63420 Arabidopsis thaliana HOM05D001045 ORTHO05D004836 5.2e-19 99.4 110 46.4
Carub.0008s2413 Capsella rubella HOM05D001045 ORTHO05D004836 5.2e-19 99.4 110 46.4
Cc03_g13140 Coffea canephora HOM05D001045 ORTHO05D004836 5.2e-19 99.4 85 58.8
COL.COLO4_28086 Corchorus olitorius HOM05D001045 ORTHO05D004836 5.2e-19 99.4 77 58.4
CAN.G352.26 Capsicum annuum HOM05D001045 ORTHO05D004836 6.8e-19 99.0 72 61.1
Sabra15G0115200 Salix brachista HOM05D001045 ORTHO05D004836 8.8e-19 98.6 75 58.7
unitig_27.g25101 Utricularia gibba HOM05D001045 ORTHO05D004836 8.8e-19 98.6 162 40.7
DCAR_016404 Daucus carota HOM05D001045 ORTHO05D004836 1.2e-18 98.2 188 36.7
Thhalv10003624m.g Eutrema salsugineum HOM05D001045 ORTHO05D004836 1.2e-18 98.2 175 35.4
Nitab4.5_0003005g0050 Nicotiana tabacum HOM05D001045 ORTHO05D004836 1.2e-18 98.2 72 61.1
Nitab4.5_0003680g0020 Nicotiana tabacum HOM05D001045 ORTHO05D004836 1.2e-18 98.2 72 61.1
Potri.012G095800 Populus trichocarpa HOM05D001045 ORTHO05D004836 1.2e-18 98.2 71 60.6
CSS0020803 Camellia sinensis var. sinensis HOM05D001045 ORTHO05D004836 1.5e-18 97.8 169 36.7
CANSAT80G0692 Cannabis sativa HOM05D001045 ORTHO05D004836 1.5e-18 97.8 116 44.0
Ciclev10018763m.g Citrus clementina HOM05D001045 ORTHO05D004836 1.5e-18 97.8 68 64.7
Dinv11158 Davidia involucrata HOM05D001045 ORTHO05D004836 2.0e-18 97.4 68 63.2
Duzib205G1644 Durio zibethinus HOM05D001045 ORTHO05D004836 2.0e-18 97.4 68 63.2
Peaxi162Scf00536g00312 Petunia axillaris HOM05D001045 ORTHO05D004836 2.0e-18 97.4 88 53.4
Potri.015G093600 Populus trichocarpa HOM05D001045 ORTHO05D004836 2.0e-18 97.4 85 56.5
Prupe.5G152800 Prunus persica HOM05D001045 ORTHO05D004836 2.0e-18 97.4 116 42.2
PGR083G0639 Punica granatum HOM05D001045 ORTHO05D004836 2.0e-18 97.4 121 44.6
Gohir.A07G051700 Gossypium hirsutum HOM05D001045 ORTHO05D004836 2.6e-18 97.1 68 63.2
Gohir.D07G056200 Gossypium hirsutum HOM05D001045 ORTHO05D004836 2.6e-18 97.1 68 63.2
Gorai.001G059600 Gossypium raimondii HOM05D001045 ORTHO05D004836 2.6e-18 97.1 68 63.2
Manes.14G052700 Manihot esculenta HOM05D001045 ORTHO05D004836 2.6e-18 97.1 121 43.0
PSO017G5689 Papaver somniferum HOM05D001045 ORTHO05D004836 2.6e-18 97.1 69 62.3
PSO478G0896 Papaver somniferum HOM05D001045 ORTHO05D004836 2.6e-18 97.1 69 62.3
QL10p004119 Quercus lobata HOM05D001045 ORTHO05D004836 2.6e-18 97.1 88 54.5
Actinidia25588 Actinidia chinensis HOM05D001045 ORTHO05D004836 3.4e-18 96.7 91 50.5
Os02g0539600 Oryza sativa ssp. japonica HOM05D001045 ORTHO05D004836 3.4e-18 96.7 103 47.6
Thecc.03G126800 Theobroma cacao HOM05D001045 ORTHO05D004836 3.4e-18 96.7 68 63.2
EL10As4g23417 Beta vulgaris HOM05D001045 ORTHO05D004836 4.4e-18 96.3 168 38.7
Medtr4g103770 Medicago truncatula HOM05D001045 ORTHO05D004836 4.4e-18 96.3 68 61.8
Nn3g16511 Nelumbo nucifera HOM05D001045 ORTHO05D004836 4.4e-18 96.3 159 36.5
Phvul.009G167400 Phaseolus vulgaris HOM05D001045 ORTHO05D004836 4.4e-18 96.3 116 44.0
RcHm_v2.0_Chr7g0190431 Rosa chinensis HOM05D001045 ORTHO05D004836 4.4e-18 96.3 116 43.1
THA.LOC104798948 Tarenaya hassleriana HOM05D001045 ORTHO05D004836 4.4e-18 96.3 101 43.6
Actinidia15837 Actinidia chinensis HOM05D001045 ORTHO05D004836 5.7e-18 95.9 90 51.1
CiPaw.12G041700 Carya illinoinensis HOM05D001045 ORTHO05D004836 5.7e-18 95.9 68 61.8
Migut.I00512 Erythranthe guttata HOM05D001045 ORTHO05D004836 5.7e-18 95.9 74 58.1
SGA_v2.0_scaffold215G42334 Striga asiatica HOM05D001045 ORTHO05D004836 5.7e-18 95.9 68 63.2
Cpa.g.sc13.140 Carica papaya HOM05D001045 ORTHO05D004836 7.5e-18 95.5 202 35.6
DCAR_026220 Daucus carota HOM05D001045 ORTHO05D004836 7.5e-18 95.5 103 46.6
TPR.G26154 Trifolium pratense HOM05D001045 ORTHO05D004836 7.5e-18 95.5 227 32.2
Actinidia08863 Actinidia chinensis HOM05D001045 ORTHO05D004836 9.8e-18 95.1 76 53.9
CDE04G0888 Ceratophyllum demersum HOM05D001045 ORTHO05D004836 9.8e-18 95.1 105 45.7
Ca_00917_v3 Cicer arietinum L. HOM05D001045 ORTHO05D004836 9.8e-18 95.1 155 36.1
FAN08G1251 Fragaria x ananassa HOM05D001045 ORTHO05D004836 9.8e-18 95.1 116 42.2
MSTRG.22907 Avicennia marina HOM05D001045 ORTHO05D004836 1.3e-17 94.7 71 57.7
Lsat_1_v5_gn_1_81241 Lactuca sativa HOM05D001045 ORTHO05D004836 1.3e-17 94.7 83 53.0
Psat4g062560 Pisum sativum HOM05D001045 ORTHO05D004836 1.3e-17 94.7 88 50.0
vmacro16670 Vaccinium macrocarpon HOM05D001045 ORTHO05D004836 1.3e-17 94.7 85 49.4
CARHR277280 Cardamine hirsuta HOM05D001045 ORTHO05D004836 1.7e-17 94.4 169 34.3
Hund02428 Selenicereus undatus HOM05D001045 ORTHO05D004836 1.7e-17 94.4 88 51.1
Ah.11g045420 Amaranthus hybridus HOM05D001045 ORTHO05D004836 2.2e-17 94.0 88 52.3
Aqoxy3G01499 Aquilegia oxysepala HOM05D001045 ORTHO05D004836 2.2e-17 94.0 158 37.3
Lj9C477G11 Lonicera japonica HOM05D001045 ORTHO05D004836 2.2e-17 94.0 157 38.2
Lj1g0009758 Lotus japonicus HOM05D001045 ORTHO05D004836 2.2e-17 94.0 126 38.9
Lalb_Chr23g0273561 Lupinus albus HOM05D001045 ORTHO05D004836 2.2e-17 94.0 85 52.9
MD06G1143600 Malus domestica HOM05D001045 ORTHO05D004836 2.2e-17 94.0 72 55.6
Rhsim08G0188700 Rhododendron simsii HOM05D001045 ORTHO05D004836 2.2e-17 94.0 71 59.2
VMungo1309G1741 Vigna mungo HOM05D001045 ORTHO05D004836 2.2e-17 94.0 88 50.0
Zm00001eb234620 Zea mays HOM05D001045 ORTHO05D004836 2.2e-17 94.0 79 51.9
arahy.Tifrunner.gnm1.ann1.3PZ9PI Arachis hypogaea HOM05D001045 ORTHO05D004836 2.8e-17 93.6 68 60.3
arahy.Tifrunner.gnm1.ann1.B3AG7P Arachis hypogaea HOM05D001045 ORTHO05D004836 2.8e-17 93.6 88 50.0
FAN04G1508 Fragaria x ananassa HOM05D001045 ORTHO05D004836 2.8e-17 93.6 167 34.7
Gohir.A03G053500 Gossypium hirsutum HOM05D001045 ORTHO05D004836 2.8e-17 93.6 68 60.3
Gohir.D03G113500 Gossypium hirsutum HOM05D001045 ORTHO05D004836 2.8e-17 93.6 68 60.3
Gorai.003G119600 Gossypium raimondii HOM05D001045 ORTHO05D004836 2.8e-17 93.6 68 60.3
Lalb_Chr11g0069641 Lupinus albus HOM05D001045 ORTHO05D004836 2.8e-17 93.6 113 43.4
Ca_24509_v3 Cicer arietinum L. HOM05D001045 ORTHO05D004836 3.7e-17 93.2 195 34.9
FvH4_5g07980 Fragaria vesca HOM05D001045 ORTHO05D004836 3.7e-17 93.2 162 35.2
FAN18G4157 Fragaria x ananassa HOM05D001045 ORTHO05D004836 3.7e-17 93.2 162 35.2
Zm00001eb187220 Zea mays HOM05D001045 ORTHO05D004836 3.7e-17 93.2 72 55.6
MD14G1158900 Malus domestica HOM05D001045 ORTHO05D004836 4.9e-17 92.8 116 42.2
Zm00001eb395650 Zea mays HOM05D001045 ORTHO05D004836 4.9e-17 92.8 116 41.4
Haze_07234 Corylus avellana HOM05D001045 ORTHO05D004836 6.3e-17 92.4 72 55.6
Medtr3g089020 Medicago truncatula HOM05D001045 ORTHO05D004836 6.3e-17 92.4 85 52.9
Zm00001eb206430 Zea mays HOM05D001045 ORTHO05D004836 6.3e-17 92.4 116 41.4
arahy.Tifrunner.gnm1.ann1.3BP915 Arachis hypogaea HOM05D001045 ORTHO05D004836 1.1e-16 91.7 96 45.8
CDE07G0011 Ceratophyllum demersum HOM05D001045 ORTHO05D004836 1.1e-16 91.7 73 56.2
Psat5g139840 Pisum sativum HOM05D001045 ORTHO05D004836 1.8e-16 90.9 201 32.8
Cfa018840 Carpinus fangiana HOM05D001045 ORTHO05D004836 2.4e-16 90.5 72 55.6
TWI14G1089 Tripterygium wilfordii HOM05D001045 ORTHO05D004836 2.4e-16 90.5 153 39.9
vmacro19213 Vaccinium macrocarpon HOM05D001045 ORTHO05D004836 2.4e-16 90.5 74 55.4
arahy.Tifrunner.gnm1.ann1.XN7UED Arachis hypogaea HOM05D001045 ORTHO05D004836 7.0e-16 89.0 143 37.8
HanXRQChr03g0064991 Helianthus annuus HOM05D001045 ORTHO05D004836 7.0e-16 89.0 147 40.1
Glyma.06G171400 Glycine max HOM05D001045 ORTHO05D004836 9.1e-16 88.6 68 58.8
Glyma.04G194600 Glycine max HOM05D001045 ORTHO05D004836 1.2e-15 88.2 68 58.8
SMO141G0105 Selaginella moellendorffii HOM05D001045 ORTHO05D004836 1.6e-15 87.8 188 33.0
VMungo1215G2889 Vigna mungo HOM05D001045 ORTHO05D004836 3.5e-15 86.7 116 41.4
AagrBONN_evm.TU.Sc2ySwM_369.157 Anthoceros agrestis HOM05D001045 ORTHO05D004836 4.5e-15 86.3 95 44.2
ECA240G2390 Erigeron canadensis HOM05D001045 ORTHO05D004836 4.5e-15 86.3 159 38.4
vmacro20277 Vaccinium macrocarpon HOM05D001045 ORTHO05D004836 5.9e-15 85.9 81 49.4
FvH4_5g08040 Fragaria vesca HOM05D001045 ORTHO05D004836 1.0e-14 85.1 67 55.2
FAN18G0261 Fragaria x ananassa HOM05D001045 ORTHO05D004836 1.3e-14 84.7 155 36.1
HPP92_008938 Vanilla planifolia HOM05D001045 ORTHO05D004836 1.7e-14 84.3 72 54.2
Pp3c20_9790 Physcomitrium patens HOM05D001045 ORTHO05D004836 3.3e-13 80.1 145 36.6
Glyma.17G128500 Glycine max HOM05D001045 ORTHO05D004836 9.5e-13 78.6 113 40.7
Mapoly0037s0113 Marchantia polymorpha HOM05D001045 ORTHO05D004836 3.0e-11 73.6 79 43.0
CBR_g16830 Chara braunii HOM05D001045 ORTHO05D004836 2.0e-10 70.9 71 46.5
Dinv04873 Davidia involucrata HOM05D001045 ORTHO05D004836 4.4e-10 69.7 46 65.2
Phvul.003G209600 Phaseolus vulgaris HOM05D001045 ORTHO05D004836 4.6e-07 59.7 113 36.3


User provided reference genes

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