Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13482 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 5.0e-162 574.3 280 100.0
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 5.7e-65 251.9 176 65.3
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 6.3e-64 248.4 226 54.4
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 1.8e-63 246.9 176 64.8
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 3.1e-63 246.1 188 62.8
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 7.0e-63 245.0 175 65.7
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 1.7e-61 240.4 175 63.4
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 1.7e-61 240.4 175 60.0
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 5.0e-61 238.8 175 63.4
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 6.5e-61 238.4 175 63.4
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 3.2e-60 236.1 175 59.4
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 4.2e-60 235.7 175 59.4
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 5.5e-60 235.3 175 59.4
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 9.4e-60 234.6 173 63.0
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 9.4e-60 234.6 175 59.4
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 1.2e-59 234.2 175 61.1
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 8.0e-59 231.5 175 60.6
TPR.G17291 Trifolium pratense HOM05D003934 ORTHO05D005108 1.0e-58 231.1 175 62.3
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 1.8e-58 230.3 175 61.1
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 3.0e-58 229.6 175 58.3
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 3.0e-58 229.6 175 59.4
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 4.0e-58 229.2 218 51.4
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 6.8e-58 228.4 175 60.0
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 6.8e-58 228.4 175 60.6
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 6.8e-58 228.4 175 59.4
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 1.2e-57 227.6 189 57.1
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 1.2e-57 227.6 175 59.4
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 1.5e-57 227.3 175 59.4
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.5e-57 227.3 175 58.9
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 1.5e-57 227.3 175 58.9
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 2.6e-57 226.5 175 59.4
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 5.7e-57 225.3 177 57.6
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 7.5e-57 224.9 175 59.4
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 7.5e-57 224.9 173 59.0
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 7.5e-57 224.9 175 57.7
Gorai.007G258600 Gossypium raimondii HOM05D003934 ORTHO05D005108 7.5e-57 224.9 175 57.7
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 9.8e-57 224.6 178 57.9
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.3e-56 224.2 175 58.3
Oeu041045.2 Olea europaea HOM05D003934 ORTHO05D005108 1.3e-56 224.2 171 59.6
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 1.7e-56 223.8 175 58.9
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 2.2e-56 223.4 175 57.7
AagrBONN_evm.TU.Sc2ySwM_368.1804 Anthoceros agrestis HOM05D003934 ORTHO05D005108 2.8e-56 223.0 177 59.3
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 2.8e-56 223.0 176 58.0
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 2.8e-56 223.0 188 56.9
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 8.3e-56 221.5 217 49.8
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 1.1e-55 221.1 175 57.1
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 1.4e-55 220.7 175 56.6
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 1.8e-55 220.3 175 57.7
AUR62019377 Chenopodium quinoa HOM05D003934 ORTHO05D005108 4.1e-55 219.2 183 55.7
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 5.4e-55 218.8 247 47.4
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 5.4e-55 218.8 218 50.5
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 5.4e-55 218.8 175 57.1
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 7.0e-55 218.4 175 56.6
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.1e-55 218.0 175 56.6
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.1e-55 218.0 175 56.6
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 9.1e-55 218.0 175 58.3
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 2.0e-54 216.9 176 56.2
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.7e-54 216.5 175 56.0
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 2.7e-54 216.5 175 57.1
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 2.7e-54 216.5 176 54.5
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 3.5e-54 216.1 175 56.0
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 3.5e-54 216.1 173 56.1
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 4.5e-54 215.7 175 57.1
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 5.9e-54 215.3 181 53.6
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 5.9e-54 215.3 175 55.4
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 1.0e-53 214.5 181 56.4
Sc25g0000870 Simmondsia chinensis HOM05D003934 ORTHO05D005108 1.7e-53 213.8 175 56.6
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 2.3e-53 213.4 175 56.0
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 2.3e-53 213.4 217 47.0
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 3.8e-53 212.6 176 56.8
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 3.8e-53 212.6 177 55.9
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 6.6e-53 211.8 176 56.8
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 1.1e-52 211.1 175 54.9
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 1.9e-52 210.3 176 56.2
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 2.5e-52 209.9 175 56.0
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 2.5e-52 209.9 175 56.0
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 2.5e-52 209.9 176 56.2
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 1.2e-51 207.6 174 56.3
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 1.2e-51 207.6 178 52.8
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 1.2e-51 207.6 182 53.3
FAN10G1096 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.6e-51 207.2 175 54.9
FAN10G2167 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.6e-51 207.2 175 54.9
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 1.6e-51 207.2 180 53.9
FAN01G0659 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.1e-51 206.8 173 55.5
SEGI_36975 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 2.8e-51 206.5 100 96.0
FvH4_7g05370 Fragaria vesca HOM05D003934 ORTHO05D005108 1.4e-50 204.1 173 54.9
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 2.3e-50 203.4 175 52.6
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 1.5e-49 200.7 175 53.7
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.0e-49 200.3 180 52.8
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 2.6e-49 199.9 218 48.2
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 3.4e-49 199.5 175 53.1
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 7.5e-49 198.4 175 51.4
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 9.8e-49 198.0 177 52.5
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 1.7e-48 197.2 179 52.5
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 2.2e-48 196.8 175 53.1
SEGI_00747 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 4.9e-48 195.7 103 91.3
SEGI_09691 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 4.9e-48 195.7 103 91.3
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 1.1e-47 194.5 177 50.8
Atru.chr1.153 Acer truncatum HOM05D003934 ORTHO05D005108 1.4e-47 194.1 175 53.1
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 4.1e-47 192.6 175 51.4
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.6e-46 190.7 175 52.6
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 2.9e-45 186.4 175 50.9
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 1.5e-44 184.1 175 52.0
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.5e-44 183.3 175 50.9
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 4.3e-44 182.6 175 49.1
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 4.3e-44 182.6 175 49.1
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 1.2e-43 181.0 175 48.6
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 8.0e-43 178.3 175 48.0
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 8.0e-43 178.3 175 48.0
FAN28G1126 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.4e-39 167.5 177 46.9
HanXRQChr09g0252971 Helianthus annuus HOM05D003934 ORTHO05D005108 1.4e-39 167.5 189 47.6
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 2.4e-39 166.8 175 46.3
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.2e-39 164.9 183 45.9
Cpa.g.sc3.69 Carica papaya HOM05D003934 ORTHO05D005108 2.0e-38 163.7 116 64.7
Prupe.2G260300 Prunus persica HOM05D003934 ORTHO05D005108 7.8e-38 161.8 184 50.0
FAN27G0411 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.0e-37 159.1 197 43.1
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 8.6e-37 158.3 139 53.2
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.9e-36 157.1 175 45.7
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 7.3e-36 155.2 175 48.0
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 1.8e-34 150.6 203 42.9
SMO119G0296 Selaginella moellendorffii HOM05D003934 ORTHO05D005108 2.9e-32 143.3 179 42.5
FvH4_2g12040 Fragaria vesca HOM05D003934 ORTHO05D005108 9.2e-31 138.3 185 42.7
AUR62019431 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.3e-26 123.6 171 38.6
AUR62034796 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.5e-25 120.9 184 37.5
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 2.0e-25 120.6 215 32.6
AUR62031013 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.9e-23 114.0 149 40.3
Sp5g08830 Schrenkiella parvula HOM05D003934 ORTHO05D005108 2.7e-22 110.2 164 39.6
Haze_26996 Corylus avellana HOM05D003934 ORTHO05D005108 1.9e-20 104.0 147 32.7
MCO08G102 Micromonas commoda HOM05D003934 ORTHO05D005108 2.5e-20 103.6 177 32.8
PRCOL_00004948 Prasinoderma coloniale HOM05D003934 ORTHO05D005108 5.6e-20 102.4 160 39.4
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 8.9e-18 95.1 166 35.5
CBR_g4095 Chara braunii HOM05D003934 ORTHO05D005108 1.2e-17 94.7 101 45.5
AUR62007347 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.0e-17 94.0 131 37.4
vmacro06541 Vaccinium macrocarpon HOM05D003934 ORTHO05D005108 1.3e-16 91.3 131 41.2
Ah.07g205840 Amaranthus hybridus HOM05D003934 ORTHO05D005108 1.5e-12 77.8 130 36.9
SEGI_10754 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 5.6e-12 75.9 42 83.3
FAN10G3094 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.3e-11 74.7 171 30.4
SEGI_10710 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.6e-11 74.3 49 77.6
QL03p031079 Quercus lobata HOM05D003851 ORTHO05D004072 2.8e-11 73.6 72 45.8
QL03p031464 Quercus lobata HOM05D003851 ORTHO05D004072 2.8e-11 73.6 72 45.8
Gorai.005G191100 Gossypium raimondii HOM05D003934 ORTHO05D005108 5.8e-09 65.9 64 50.0
PSO782G1765 Papaver somniferum HOM05D003934 ORTHO05D005108 7.6e-09 65.5 173 30.1
AUR62031015 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.7e-08 64.3 64 42.2
Pp3c6_10990 Physcomitrium patens HOM05D003934 ORTHO05D314706 4.9e-08 62.8 56 51.8
FvH4_5g28470 Fragaria vesca HOM05D003934 ORTHO05D005108 2.4e-07 60.5 78 42.3
MBI07_g07098_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 5.4e-07 59.3 37 64.9
MBI07_g07099_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 1.6e-06 57.8 36 66.7
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 3.5e-06 56.6 36 66.7


User provided reference genes

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