Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08777 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 3.6e-182 641.3 304 100.0
SEGI_33990 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 7.9e-28 128.6 182 41.8
SEGI_04574 Sequoiadendron giganteum HOM05D012315 ORTHO05D000006 3.7e-25 119.8 68 79.4
Cc08_g00060 Coffea canephora HOM05D000104 ORTHO05D003467 2.5e-21 107.1 185 36.8
CSS0003293 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 3.2e-21 106.7 176 39.2
ATR1153G016 Amborella trichopoda HOM05D000104 ORTHO05D003467 3.6e-20 103.2 180 35.0
Lsat_1_v5_gn_1_42900 Lactuca sativa HOM05D000104 ORTHO05D003467 4.7e-20 102.8 179 35.2
Manes.03G010400 Manihot esculenta HOM05D000104 ORTHO05D003467 4.7e-20 102.8 199 34.2
CSS0032982 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 7.9e-20 102.1 176 38.6
Haze_21436 Corylus avellana HOM05D000104 ORTHO05D003467 1.0e-19 101.7 176 33.0
PGR044G1954 Punica granatum HOM05D000104 ORTHO05D003467 1.4e-19 101.3 178 37.6
Peaxi162Scf00430g00415 Petunia axillaris HOM05D000104 ORTHO05D003467 2.3e-19 100.5 193 35.2
Peaxi162Scf00632g00012 Petunia axillaris HOM05D000104 ORTHO05D003467 6.7e-19 99.0 183 33.9
Hma1.2p1_0392F.1_g143010 Hydrangea macrophylla HOM05D000104 ORTHO05D003467 1.1e-18 98.2 187 33.2
Sabra06G0204500 Salix brachista HOM05D000104 ORTHO05D003467 1.1e-18 98.2 178 34.8
Solyc06g065730.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 1.5e-18 97.8 186 33.9
Solyc08g029130.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 1.5e-18 97.8 189 33.3
Sopen08g010020 Solanum pennellii HOM05D000104 ORTHO05D003467 1.5e-18 97.8 188 33.5
vmacro11232 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 1.5e-18 97.8 179 36.3
Lj7A730T43 Lonicera japonica HOM05D000104 ORTHO05D003467 2.0e-18 97.4 176 35.8
Sopen06g024260 Solanum pennellii HOM05D000104 ORTHO05D003467 2.0e-18 97.4 186 33.9
QL02p019684 Quercus lobata HOM05D000104 ORTHO05D003467 2.6e-18 97.1 176 33.5
Actinidia13200 Actinidia chinensis HOM05D000104 ORTHO05D003467 3.3e-18 96.7 176 36.4
CAN.G199.65 Capsicum annuum HOM05D000104 ORTHO05D003467 4.4e-18 96.3 187 33.7
Potri.006G262200 Populus trichocarpa HOM05D000104 ORTHO05D003467 4.4e-18 96.3 177 33.3
Rhsim07G0163100 Rhododendron simsii HOM05D000104 ORTHO05D003467 4.4e-18 96.3 178 33.1
Dinv16472 Davidia involucrata HOM05D000104 ORTHO05D003467 5.7e-18 95.9 176 35.2
Ca_15766_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 7.4e-18 95.5 178 33.7
vmacro05141 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 7.4e-18 95.5 176 34.1
HanXRQChr01g0030671 Helianthus annuus HOM05D000104 ORTHO05D003467 9.7e-18 95.1 176 34.1
SGA_v2.0_scaffold20G09081 Striga asiatica HOM05D000104 ORTHO05D003467 9.7e-18 95.1 197 32.0
arahy.Tifrunner.gnm1.ann1.QU94QB Arachis hypogaea HOM05D000104 ORTHO05D003467 1.7e-17 94.4 180 33.3
Psat5g031880 Pisum sativum HOM05D000104 ORTHO05D003467 1.7e-17 94.4 178 33.7
Gorai.010G244100 Gossypium raimondii HOM05D000104 ORTHO05D003467 2.2e-17 94.0 175 31.4
Nitab4.5_0003811g0020 Nicotiana tabacum HOM05D000104 ORTHO05D003467 2.8e-17 93.6 181 33.1
Prupe.1G391600 Prunus persica HOM05D000104 ORTHO05D003467 2.8e-17 93.6 182 33.5
Glyma.04G062400 Glycine max HOM05D000104 ORTHO05D003467 3.7e-17 93.2 178 33.1
Manes.16G127700 Manihot esculenta HOM05D000104 ORTHO05D003467 3.7e-17 93.2 179 33.0
TPR.G3131 Trifolium pratense HOM05D000104 ORTHO05D003467 3.7e-17 93.2 178 33.7
TWI63G1656 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 3.7e-17 93.2 177 31.1
TAR625G0155 Trochodendron aralioides HOM05D000104 ORTHO05D003467 3.7e-17 93.2 180 36.1
COL.COLO4_18936 Corchorus olitorius HOM05D000104 ORTHO05D003467 4.8e-17 92.8 185 31.9
Medtr3g106210 Medicago truncatula HOM05D000104 ORTHO05D003467 4.8e-17 92.8 181 34.3
Nn2g12306 Nelumbo nucifera HOM05D000104 ORTHO05D003467 4.8e-17 92.8 176 34.7
Rhsim02G0208200 Rhododendron simsii HOM05D000104 ORTHO05D003467 6.3e-17 92.4 176 34.1
VMungo1309G2115 Vigna mungo HOM05D000104 ORTHO05D003467 6.3e-17 92.4 186 33.9
GSVIVG01035901001 Vitis vinifera HOM05D000104 ORTHO05D003467 6.3e-17 92.4 184 33.7
SEGI_11380 Sequoiadendron giganteum HOM05D015923 ORTHO05D018120 8.2e-17 92.0 98 42.9
Atru.chr7.2524 Acer truncatum HOM05D000104 ORTHO05D003467 1.1e-16 91.7 176 32.4
DCAR_003002 Daucus carota HOM05D000104 ORTHO05D003467 1.1e-16 91.7 182 33.0
Gohir.A13G179800 Gossypium hirsutum HOM05D000104 ORTHO05D003467 1.4e-16 91.3 175 30.9
Ciclev10010331m.g Citrus clementina HOM05D000104 ORTHO05D003467 1.8e-16 90.9 176 33.0
Potri.018G021100 Populus trichocarpa HOM05D000104 ORTHO05D003467 1.8e-16 90.9 179 34.1
Hund03464 Selenicereus undatus HOM05D000104 ORTHO05D003467 1.8e-16 90.9 178 33.1
Gohir.D07G035100 Gossypium hirsutum HOM05D000104 ORTHO05D003467 2.4e-16 90.5 176 34.7
Sabra18G0023400 Salix brachista HOM05D000104 ORTHO05D003467 2.4e-16 90.5 176 33.5
Gohir.A07G031300 Gossypium hirsutum HOM05D000104 ORTHO05D003467 3.1e-16 90.1 176 35.2
Gorai.001G036900 Gossypium raimondii HOM05D000104 ORTHO05D003467 3.1e-16 90.1 176 35.2
PSO384G0886 Papaver somniferum HOM05D000104 ORTHO05D003467 3.1e-16 90.1 178 33.7
vmacro05139 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 3.1e-16 90.1 176 35.2
Eucgr.G00556 Eucalyptus grandis HOM05D000104 ORTHO05D003467 4.1e-16 89.7 176 34.1
Nitab4.5_0002503g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 4.1e-16 89.7 187 33.2
PSO339G0671 Papaver somniferum HOM05D000104 ORTHO05D003467 4.1e-16 89.7 178 33.1
Sed0013682 Sechium edule HOM05D000104 ORTHO05D003467 4.1e-16 89.7 176 34.1
Lalb_Chr08g0244361 Lupinus albus HOM05D000104 ORTHO05D003467 5.3e-16 89.4 179 32.4
Lj1g0020904 Lotus japonicus HOM05D000104 ORTHO05D003467 7.0e-16 89.0 176 33.5
Lalb_Chr23g0268291 Lupinus albus HOM05D000104 ORTHO05D003467 7.0e-16 89.0 181 34.3
Aqoxy2G02630 Aquilegia oxysepala HOM05D000104 ORTHO05D003467 9.1e-16 88.6 175 30.9
Sp4g04150 Schrenkiella parvula HOM05D000104 ORTHO05D003467 9.1e-16 88.6 174 30.5
ClCG05G016460 Citrullus lanatus HOM05D000104 ORTHO05D003467 1.2e-15 88.2 176 32.4
FAN15G1888 Fragaria x ananassa HOM05D000104 ORTHO05D003467 1.2e-15 88.2 74 47.3
CiPaw.08G007100 Carya illinoinensis HOM05D000104 ORTHO05D003467 1.6e-15 87.8 176 31.8
CsaV3_4G036700 Cucumis sativus L. HOM05D000104 ORTHO05D003467 1.6e-15 87.8 176 32.4
Aa31sc100G10 Aethionema arabicum HOM05D000104 ORTHO05D003467 2.0e-15 87.4 174 34.5
AUR62031587 Chenopodium quinoa HOM05D000104 ORTHO05D003467 2.0e-15 87.4 176 32.4
Duzib150G0247 Durio zibethinus HOM05D000104 ORTHO05D003467 2.0e-15 87.4 175 31.4
Glyma.06G063400 Glycine max HOM05D000104 ORTHO05D003467 2.0e-15 87.4 182 33.0
Phvul.009G088700 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 2.0e-15 87.4 185 32.4
ECA248G2891 Erigeron canadensis HOM05D000104 ORTHO05D003467 2.6e-15 87.0 176 31.2
Oeu012636.1 Olea europaea HOM05D000104 ORTHO05D003467 2.6e-15 87.0 176 33.5
FvH4_2g40920 Fragaria vesca HOM05D005818 ORTHO05D003467 3.5e-15 86.7 74 47.3
FAN20G2022 Fragaria x ananassa HOM05D000104 ORTHO05D003467 3.5e-15 86.7 74 45.9
FAN27G0005 Fragaria x ananassa HOM05D000104 ORTHO05D003467 3.5e-15 86.7 74 47.3
HPP92_004615 Vanilla planifolia HOM05D000104 ORTHO05D003467 3.5e-15 86.7 65 55.4
Cpa.g.sc127.15 Carica papaya HOM05D000104 ORTHO05D003467 4.5e-15 86.3 180 32.8
Medtr1g013190 Medicago truncatula HOM05D000104 ORTHO05D003467 4.5e-15 86.3 174 33.9
Hund19597 Selenicereus undatus HOM05D000104 ORTHO05D003467 4.5e-15 86.3 205 29.8
AL4G16380 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 5.9e-15 85.9 174 29.9
CDE06G2391 Ceratophyllum demersum HOM05D000104 ORTHO05D003467 5.9e-15 85.9 176 31.2
Thhalv10000014m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 5.9e-15 85.9 176 29.0
MELO3C016973.2 Cucumis melo HOM05D000104 ORTHO05D003467 7.7e-15 85.5 191 31.9
Sc09g0010480 Simmondsia chinensis HOM05D000104 ORTHO05D003467 7.7e-15 85.5 64 54.7
Migut.A00006 Erythranthe guttata HOM05D000104 ORTHO05D003467 1.0e-14 85.1 190 31.6
Carub.0004s0475 Capsella rubella HOM05D000104 ORTHO05D003467 1.3e-14 84.7 174 33.3
AUR62012463 Chenopodium quinoa HOM05D000104 ORTHO05D003467 1.7e-14 84.3 176 32.4
HanXRQChr11g0353801 Helianthus annuus HOM05D000104 ORTHO05D003467 1.7e-14 84.3 176 31.2
Nitab4.5_0002973g0030 Nicotiana tabacum HOM05D000104 ORTHO05D003467 1.7e-14 84.3 64 54.7
Sed0022321 Sechium edule HOM05D000104 ORTHO05D003467 1.7e-14 84.3 184 31.0
MD08G1058800 Malus domestica HOM05D000104 ORTHO05D003467 2.2e-14 84.0 74 51.4
MD15G1037700 Malus domestica HOM05D000104 ORTHO05D003467 2.2e-14 84.0 64 56.2
Phvul.001G046100 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 2.2e-14 84.0 189 30.7
Thecc.09G017400 Theobroma cacao HOM05D000104 ORTHO05D003467 2.2e-14 84.0 178 30.3
EL10Ac2g04134 Beta vulgaris HOM05D000104 ORTHO05D003467 2.9e-14 83.6 175 32.6
BcaB08g35151 Brassica carinata HOM05D000104 ORTHO05D003467 2.9e-14 83.6 174 29.3
Lalb_Chr24g0402041 Lupinus albus HOM05D000104 ORTHO05D003467 2.9e-14 83.6 213 28.2
Nitab4.5_0000486g0100 Nicotiana tabacum HOM05D000104 ORTHO05D003467 3.8e-14 83.2 124 39.5
Ah.16g104930 Amaranthus hybridus HOM05D000104 ORTHO05D003467 5.0e-14 82.8 173 32.9
Ah.10g035570 Amaranthus hybridus HOM05D000104 ORTHO05D003467 6.5e-14 82.4 176 32.4
AT2G25170 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 6.5e-14 82.4 174 31.6
MSTRG.11592 Avicennia marina HOM05D000104 ORTHO05D003467 6.5e-14 82.4 265 27.2
DCAR_007677 Daucus carota HOM05D000104 ORTHO05D003467 6.5e-14 82.4 183 31.1
RcHm_v2.0_Chr6g0299661 Rosa chinensis HOM05D000104 ORTHO05D003467 8.5e-14 82.0 178 30.9
Psat6g027200 Pisum sativum HOM05D000104 ORTHO05D003467 1.1e-13 81.6 180 32.2
CARHR116490 Cardamine hirsuta HOM05D000104 ORTHO05D003467 1.9e-13 80.9 177 31.6
A09p55830 Brassica napus HOM05D000104 ORTHO05D003467 3.2e-13 80.1 178 29.2
C08p38830 Brassica napus HOM05D000104 ORTHO05D003467 3.2e-13 80.1 178 29.2
THA.LOC104803854 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 3.2e-13 80.1 178 33.1
HPP92_004610 Vanilla planifolia HOM05D000104 ORTHO05D003467 3.2e-13 80.1 60 55.0
Pp3c18_19040 Physcomitrium patens HOM05D000104 ORTHO05D003467 4.2e-13 79.7 163 36.8
Pp3c18_19045 Physcomitrium patens HOM05D000104 ORTHO05D003467 4.2e-13 79.7 163 36.8
BcaC07g40886 Brassica carinata HOM05D000104 ORTHO05D003467 5.5e-13 79.3 178 30.3
BolC8t51453H Brassica oleracea HOM05D000104 ORTHO05D003467 5.5e-13 79.3 178 30.3
BraA09t40986Z Brassica rapa HOM05D000104 ORTHO05D003467 5.5e-13 79.3 174 32.2
TWI32G0850 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 5.5e-13 79.3 68 48.5
Oeu056768.1 Olea europaea HOM05D000104 ORTHO05D003467 9.4e-13 78.6 63 52.4
SMO200G0085 Selaginella moellendorffii HOM05D000104 ORTHO05D003467 1.2e-12 78.2 165 30.9
RcHm_v2.0_Chr3g0455421 Rosa chinensis HOM05D000104 ORTHO05D003467 3.6e-12 76.6 62 48.4
THA.LOC104803635 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 8.0e-12 75.5 63 52.4
Mapoly0010s0012 Marchantia polymorpha HOM05D000104 ORTHO05D003467 1.0e-11 75.1 166 33.1
Glyma.17G217300 Glycine max HOM05D000104 ORTHO05D003467 2.3e-11 73.9 178 28.1
TPR.G26726 Trifolium pratense HOM05D000104 ORTHO05D003467 4.0e-11 73.2 65 46.2
AagrBONN_evm.TU.Sc2ySwM_344.1528 Anthoceros agrestis HOM05D000104 ORTHO05D003467 2.0e-10 70.9 168 29.2
Lalb_Chr22g0361401 Lupinus albus HOM05D000104 ORTHO05D003467 2.0e-10 70.9 65 47.7
Pp3c21_10800 Physcomitrium patens HOM05D000104 ORTHO05D003467 2.6e-10 70.5 163 33.7
TPR.G38889 Trifolium pratense HOM05D000104 ORTHO05D003467 2.6e-10 70.5 65 46.2
VMungo0647G2573 Vigna mungo HOM05D000104 ORTHO05D003467 2.6e-10 70.5 64 43.8
Thhalv10027006m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 4.4e-10 69.7 68 42.6
TPR.G25705 Trifolium pratense HOM05D002753 ORTHO05D003467 1.3e-09 68.2 65 44.6
SMO228G0183 Selaginella moellendorffii HOM05D000104 ORTHO05D003467 1.7e-09 67.8 174 30.5
Sp7g29720 Schrenkiella parvula HOM05D000104 ORTHO05D003467 3.7e-09 66.6 67 44.8
THA.LOC104804839 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 1.8e-08 64.3 71 39.4
THA.LOC104804837 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 2.4e-08 63.9 71 39.4
A03p61110 Brassica napus HOM05D000104 ORTHO05D003467 4.1e-08 63.2 69 43.5
BraA03t15150Z Brassica rapa HOM05D000104 ORTHO05D003467 4.1e-08 63.2 69 43.5
Os06g0183800 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D003467 7.0e-08 62.4 61 44.3
AT4G31900 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 1.2e-07 61.6 62 45.2
AL7G20000 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 3.5e-07 60.1 49 49.0
C07p58980 Brassica napus HOM05D000104 ORTHO05D003467 3.5e-07 60.1 62 41.9
BolC7t46345H Brassica oleracea HOM05D000104 ORTHO05D003467 3.5e-07 60.1 62 41.9
TWI32G1204 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 3.5e-07 60.1 59 49.2
A01p06340 Brassica napus HOM05D000104 ORTHO05D003467 5.9e-07 59.3 65 43.1
BraA01t00599Z Brassica rapa HOM05D000104 ORTHO05D003467 5.9e-07 59.3 65 43.1
CBR_g16815 Chara braunii HOM05D000104 ORTHO05D003467 2.9e-06 57.0 64 45.3
BcaC09g51983 Brassica carinata HOM05D000104 ORTHO05D003467 3.8e-06 56.6 70 37.1
A01p06320 Brassica napus HOM05D000104 ORTHO05D003467 3.8e-06 56.6 70 38.6
BraA01t00598Z Brassica rapa HOM05D000104 ORTHO05D003467 3.8e-06 56.6 70 38.6
Actinidia22307 Actinidia chinensis HOM05D000104 ORTHO05D003467 5.0e-06 56.2 35 62.9
C01p06980 Brassica napus HOM05D000104 ORTHO05D003467 6.5e-06 55.8 70 37.1
BolC1t00694H Brassica oleracea HOM05D000104 ORTHO05D003467 6.5e-06 55.8 70 37.1


User provided reference genes

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