Gene: AT4G31900
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G31900
- Transcript Identifier AT4G31900.2
- Gene Type Coding gene
- Location Chr4 : 15431528-15438443 : positive
Gene Family Information
- ID HOM05D000104
- #Genes/#Species 3097/100
- Phylogenetic origin
- ID ORTHO05D003467
- #Genes/#Species 222/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G31900.2
- symbol PKR2
- Alias CHR7,chromatin remodeling 7
- full_name PICKLE RELATED 2
- uniprot F4JTF6
Descriptions
- Description chromatin remodeling factor
- Computational description PICKLE RELATED 2 (PKR2); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 19383 Blast hits to 16625 proteins in 2121 species: Archae - 158; Bacteria - 5872; Metazoa - 3841; Fungi - 4162; Plants - 1629; Viruses - 186; Other Eukaryotes - 3535 (source: NCBI BLink).
- Computational description PICKLE RELATED 2 (PKR2); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), DEAD-like helicase, N-terminal (InterPro:IPR014001), Protein of unknown function DUF1086 (InterPro:IPR009462), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006325 | IEA | GOA Database | chromatin organization |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0140658 | IEA | Gene Ontology | ATPase-dependent chromatin remodeler activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0070615 | IEA | GOA Database | nucleosome-dependent ATPase activity | |
| GO:0070615 | IEA | InterPro | nucleosome-dependent ATPase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| IPR001650 | Helicase, C-terminal |
| IPR009462 | Domain of unknown function DUF1086 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR009463 | Domain of unknown function DUF1087 |
| IPR016197 | Chromo-like domain superfamily |
| IPR000953 | Chromo/chromo shadow domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR000330 | SNF2, N-terminal |
| IPR023780 | Chromo domain |
| Mapman id | Description |
|---|---|
| 12.4.7.2 | Chromatin organisation.nucleosome remodeling.CHD chromatin remodeling activities.CHD3-type chromatin remodeling factor (PKL/PKR) |