Gene: Sopen06g024260

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g024260
  • Transcript Identifier Sopen06g024260.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 51768859-51819214 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g024260.1

Descriptions

  • Description Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis. | PICKLE (PKL) | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 , Zinc finger, RING-type , Zinc finger, PHD-type, conserved site , Zinc finger, PHD-type , Protein of unknown function DUF1086 , Chromo domain , SNF2-related , DEAD-like helicase, N-terminal , Chromo domain-like , DNA/RNA helicase, C-terminal , Zinc finger, FYVE/PHD-type , Helicase, superfamily 1/2, ATP-binding domain , Zinc finger, PHD-finger | BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT2G25170
GO:0051301
ISO
PLAZA Integrative Orthologycell division AT2G25170
GO:0009739
ISO
PLAZA Integrative Orthologyresponse to gibberellin AT2G25170
GO:0009992
ISO
PLAZA Integrative Orthologycellular water homeostasis AT2G25170
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT2G25170
GO:2000023
ISO
PLAZA Integrative Orthologyregulation of lateral root development AT2G25170
GO:0009736
ISO
PLAZA Integrative Orthologycytokinin-activated signaling pathway AT2G25170
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT2G25170
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT2G25170
GO:0009788
ISO
PLAZA Integrative Orthologynegative regulation of abscisic acid-activated signaling pathway AT2G25170

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G25170

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR019787 Zinc finger, PHD-finger
IPR000953 Chromo/chromo shadow domain
IPR016197 Chromo-like domain superfamily
IPR038718 SNF2-like, N-terminal domain superfamily
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR000330 SNF2, N-terminal
IPR023780 Chromo domain
IPR009462 Domain of unknown function DUF1086
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR009463 Domain of unknown function DUF1087
IPR012957 CHD, C-terminal 2
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR001965 Zinc finger, PHD-type
Mapman id Description
12.4.7.2 Chromatin organisation.nucleosome remodeling.CHD chromatin remodeling activities.CHD3-type chromatin remodeling factor (PKL/PKR)