Gene: AT2G25170

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G25170
  • Transcript Identifier AT2G25170.1
  • Gene Type Coding gene
  • Location Chr2 : 10714411-10723763 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G25170.1
  • symbol PKL
  • Alias CHD3,CHR6,CKH2,CYTOKININ-HYPERSENSITIVE 2,EPP1,ENHANCED PHOTOMORPHOGENIC 1,GYM,GYMNOS,SSL2,SUPPRESSOR OF SLR 2
  • full_name PICKLE
  • uniprot Q9S775

Descriptions

  • Description chromatin remodeling factor CHD3 (PICKLE)
  • Computational description PICKLE (PKL); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative (TAIR:AT4G31900.1); Has 20234 Blast hits to 17178 proteins in 1958 species: Archae - 161; Bacteria - 5176; Metazoa - 5098; Fungi - 4334; Plants - 1876; Viruses - 134; Other Eukaryotes - 3455 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009739
IMP
Gene Ontologyresponse to gibberellin1
GO:0006325
IEA
GOA Databasechromatin organization
GO:0051301
IMP
Gene Ontologycell division1
GO:0048364
IMP
Gene Ontologyroot development1
GO:0009788
IMP
Gene Ontologynegative regulation of abscisic acid-activated signaling pathway2
GO:2000023
IMP
Gene Ontologyregulation of lateral root development3
GO:0009733
IMP
Gene Ontologyresponse to auxin3
GO:0009992
IMP
Gene Ontologycellular water homeostasis4
GO:0009414
IMP
Gene Ontologyresponse to water deprivation4
GO:0009736
IMP
Gene Ontologycytokinin-activated signaling pathway5
GO:0045892
IMP
Gene Ontologynegative regulation of transcription, DNA-templated6
GO:0006338
ISS
Gene Ontologychromatin remodeling6

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
ISS
Gene OntologyDNA binding6
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016887
ISS
Gene OntologyATP hydrolysis activity6
GO:0003678
ISS
Gene OntologyDNA helicase activity6
GO:0140658
IEA
Gene OntologyATPase-dependent chromatin remodeler activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus7

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000330 SNF2, N-terminal
IPR019787 Zinc finger, PHD-finger
IPR009463 Domain of unknown function DUF1087
IPR016197 Chromo-like domain superfamily
IPR001650 Helicase, C-terminal
IPR009462 Domain of unknown function DUF1086
IPR000953 Chromo/chromo shadow domain
IPR001965 Zinc finger, PHD-type
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR023780 Chromo domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR038718 SNF2-like, N-terminal domain superfamily
Mapman id Description
12.4.7.2 Chromatin organisation.nucleosome remodeling.CHD chromatin remodeling activities.CHD3-type chromatin remodeling factor (PKL/PKR)