Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_05705 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 9.5e-59 229.9 114 100.0
Pp3c3_16930 Physcomitrium patens HOM05D005767 ORTHO05D006785 8.4e-31 137.1 108 59.3
AagrBONN_evm.TU.Sc2ySwM_117.1514 Anthoceros agrestis HOM05D005767 ORTHO05D006785 8.1e-26 120.6 108 50.0
CBR_g48654 Chara braunii HOM05D005767 ORTHO05D006785 4.0e-25 118.2 108 47.2
Cre07.g350550 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 7.3e-19 97.4 105 48.6
Cre12.g534151 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 8.7e-12 73.9 83 42.2
TAR376G0924 Trochodendron aralioides HOM05D005767 ORTHO05D006785 1.9e-11 72.8 91 41.8
HanXRQChr09g0256711 Helianthus annuus HOM05D005767 ORTHO05D006785 4.3e-11 71.6 89 39.3
Nn1g05917 Nelumbo nucifera HOM05D005767 ORTHO05D006785 2.8e-10 68.9 95 38.9
RcHm_v2.0_Chr2g0099381 Rosa chinensis HOM05D005767 ORTHO05D006785 2.8e-10 68.9 91 38.5
CDE04G0100 Ceratophyllum demersum HOM05D005767 ORTHO05D006785 8.1e-10 67.4 92 40.2
Pp3c17_13320 Physcomitrium patens HOM05D005767 ORTHO05D006785 8.1e-10 67.4 70 44.3
Migut.N01741 Erythranthe guttata HOM05D005767 ORTHO05D006785 1.4e-09 66.6 90 42.2
FvH4_1g11761 Fragaria vesca HOM05D005767 ORTHO05D006785 1.4e-09 66.6 89 38.2
Mapoly0107s0007 Marchantia polymorpha HOM05D005767 ORTHO05D006785 1.4e-09 66.6 85 38.8
FAN19G2575 Fragaria x ananassa HOM05D005767 ORTHO05D006785 1.8e-09 66.2 89 38.2
Gohir.A11G175000 Gossypium hirsutum HOM05D005767 ORTHO05D006785 1.8e-09 66.2 70 47.1
Gohir.D11G182500 Gossypium hirsutum HOM05D005767 ORTHO05D006785 1.8e-09 66.2 70 47.1
Gorai.007G194300 Gossypium raimondii HOM05D005767 ORTHO05D006785 1.8e-09 66.2 70 47.1
MD02G1131900 Malus domestica HOM05D005767 ORTHO05D006785 1.8e-09 66.2 91 37.4
Solyc03g033530.4 Solanum lycopersicum HOM05D005767 ORTHO05D006785 1.8e-09 66.2 115 35.7
Cre12.g532750 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 2.4e-09 65.9 65 43.1
Nitab4.5_0006119g0040 Nicotiana tabacum HOM05D005767 ORTHO05D006785 2.4e-09 65.9 70 47.1
Peaxi162Scf00050g00215 Petunia axillaris HOM05D005767 ORTHO05D006785 2.4e-09 65.9 70 45.7
SHI08521 Sapria himalayana HOM05D000565 ORTHO05D002009 2.4e-09 65.9 87 41.4
FAN26G3405 Fragaria x ananassa HOM05D005767 ORTHO05D006785 3.1e-09 65.5 89 38.2
Psat4g100320 Pisum sativum HOM05D005767 ORTHO05D006785 3.1e-09 65.5 88 39.8
Sopen03g006310 Solanum pennellii HOM05D005767 ORTHO05D006785 3.1e-09 65.5 86 41.9
CsaV3_6G047130 Cucumis sativus L. HOM05D005767 ORTHO05D006785 4.0e-09 65.1 89 38.2
SMO356G0595 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 4.0e-09 65.1 73 43.8
MELO3C007906.2 Cucumis melo HOM05D005767 ORTHO05D006785 6.9e-09 64.3 91 37.4
Dinv33631 Davidia involucrata HOM05D005767 ORTHO05D006785 6.9e-09 64.3 91 36.3
PSO541G2118 Papaver somniferum HOM05D005767 ORTHO05D006785 6.9e-09 64.3 95 40.0
Lsat_1_v5_gn_4_144841 Lactuca sativa HOM05D005767 ORTHO05D006785 9.0e-09 63.9 84 40.5
Potri.007G057400 Populus trichocarpa HOM05D005767 ORTHO05D006785 9.0e-09 63.9 70 41.4
ClCG01G020330 Citrullus lanatus HOM05D005767 ORTHO05D006785 1.2e-08 63.5 96 37.5
Lj4g0015609 Lotus japonicus HOM05D005767 ORTHO05D006785 1.2e-08 63.5 70 44.3
ATR0810G226 Amborella trichopoda HOM05D005767 ORTHO05D006785 1.5e-08 63.2 84 39.3
arahy.Tifrunner.gnm1.ann1.12F6XV Arachis hypogaea HOM05D005767 ORTHO05D006785 1.5e-08 63.2 70 44.3
arahy.Tifrunner.gnm1.ann1.G0D851 Arachis hypogaea HOM05D005767 ORTHO05D006785 1.5e-08 63.2 70 44.3
Thecc.01G018100 Theobroma cacao HOM05D005767 ORTHO05D006785 1.5e-08 63.2 70 45.7
HPP92_005447 Vanilla planifolia HOM05D005767 ORTHO05D006785 1.5e-08 63.2 70 41.4
CAN.G1735.5 Capsicum annuum HOM05D005767 ORTHO05D006785 2.0e-08 62.8 70 44.3
FAN28G0764 Fragaria x ananassa HOM05D005767 ORTHO05D006785 2.0e-08 62.8 89 36.0
PGR119G2148 Punica granatum HOM05D005767 ORTHO05D006785 2.0e-08 62.8 84 38.1
TPR.G27975 Trifolium pratense HOM05D005767 ORTHO05D006785 2.0e-08 62.8 90 38.9
DCAR_026000 Daucus carota HOM05D005767 ORTHO05D006785 2.6e-08 62.4 70 41.4
ECA232G4495 Erigeron canadensis HOM05D005767 ORTHO05D006785 2.6e-08 62.4 89 36.0
Manes.01G146000 Manihot esculenta HOM05D005767 ORTHO05D006785 2.6e-08 62.4 91 37.4
Ciclev10025146m.g Citrus clementina HOM05D005767 ORTHO05D006785 3.4e-08 62.0 84 38.1
Duzib147G1641 Durio zibethinus HOM05D005767 ORTHO05D006785 3.4e-08 62.0 70 44.3
MBI09_g09407_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 3.4e-08 62.0 76 40.8
MSTRG.23406 Avicennia marina HOM05D005767 ORTHO05D006785 4.5e-08 61.6 90 40.0
Medtr8g075810 Medicago truncatula HOM05D005767 ORTHO05D006785 4.5e-08 61.6 84 36.9
Phvul.003G261600 Phaseolus vulgaris HOM05D005767 ORTHO05D006785 4.5e-08 61.6 87 39.1
Sed0019779 Sechium edule HOM05D005767 ORTHO05D006785 4.5e-08 61.6 70 41.4
VMungo0251G0680 Vigna mungo HOM05D005767 ORTHO05D006785 4.5e-08 61.6 86 38.4
Aqoxy6G02211 Aquilegia oxysepala HOM05D005767 ORTHO05D006785 5.8e-08 61.2 91 36.3
Cpa.g.sc6.256 Carica papaya HOM05D005767 ORTHO05D006785 5.8e-08 61.2 70 44.3
Glyma.02G048200 Glycine max HOM05D005767 ORTHO05D006785 5.8e-08 61.2 73 42.5
CSS0010624 Camellia sinensis var. sinensis HOM05D005767 ORTHO05D006785 7.6e-08 60.8 88 37.5
Haze_03760 Corylus avellana HOM05D005767 ORTHO05D006785 7.6e-08 60.8 70 44.3
Os09g0536000 Oryza sativa ssp. japonica HOM05D005767 ORTHO05D006785 7.6e-08 60.8 70 47.1
CiPaw.07G058900 Carya illinoinensis HOM05D005767 ORTHO05D006785 9.9e-08 60.5 70 42.9
Lalb_Chr05g0229861 Lupinus albus HOM05D005767 ORTHO05D006785 1.3e-07 60.1 70 41.4
Ca_22378_v3 Cicer arietinum L. HOM05D005767 ORTHO05D006785 1.7e-07 59.7 86 37.2
Lj2C469G1 Lonicera japonica HOM05D005767 ORTHO05D006785 1.7e-07 59.7 70 42.9
Prupe.7G168600 Prunus persica HOM05D005767 ORTHO05D006785 1.7e-07 59.7 89 37.1
QL06p032910 Quercus lobata HOM05D005767 ORTHO05D006785 1.7e-07 59.7 70 42.9
Atru.chr3.804 Acer truncatum HOM05D005767 ORTHO05D006785 2.2e-07 59.3 70 42.9
SGA_v2.0_scaffold76G25121 Striga asiatica HOM05D005767 ORTHO05D006785 2.2e-07 59.3 90 37.8
AUR62003364 Chenopodium quinoa HOM05D005767 ORTHO05D006785 2.9e-07 58.9 96 34.4
AUR62029469 Chenopodium quinoa HOM05D005767 ORTHO05D006785 2.9e-07 58.9 96 34.4
COL.COLO4_21902 Corchorus olitorius HOM05D005767 ORTHO05D006785 2.9e-07 58.9 70 42.9
MCO08G331 Micromonas commoda HOM05D005767 ORTHO05D006785 2.9e-07 58.9 73 43.8
Ah.03g148810 Amaranthus hybridus HOM05D005767 ORTHO05D006785 3.8e-07 58.5 70 42.9
Sc16g0002260 Simmondsia chinensis HOM05D005767 ORTHO05D006785 3.8e-07 58.5 89 33.7
vmacro22135 Vaccinium macrocarpon HOM05D005767 ORTHO05D006785 4.9e-07 58.2 88 37.5
GSVIVG01018776001 Vitis vinifera HOM05D005767 ORTHO05D006785 4.9e-07 58.2 91 34.1
Aa31LG6G13010 Aethionema arabicum HOM05D005767 ORTHO05D006785 6.4e-07 57.8 82 34.1
Cc07_g10770 Coffea canephora HOM05D005767 ORTHO05D006785 8.4e-07 57.4 70 41.4
AL4G39540 Arabidopsis lyrata HOM05D005620 ORTHO05D002193 1.9e-06 56.2 73 41.1
AT2G41460 Arabidopsis thaliana HOM05D005620 ORTHO05D002193 1.9e-06 56.2 73 41.1
Carub.0007s0418 Capsella rubella HOM05D005767 ORTHO05D006785 1.9e-06 56.2 87 33.3
Sp7g33830 Schrenkiella parvula HOM05D005767 ORTHO05D006785 1.9e-06 56.2 84 35.7
AL7G15000 Arabidopsis lyrata HOM05D005767 ORTHO05D006785 2.4e-06 55.8 91 31.9
Nitab4.5_0000438g0060 Nicotiana tabacum HOM05D005767 ORTHO05D006785 2.4e-06 55.8 85 38.8
CARHR136580 Cardamine hirsuta HOM05D005620 ORTHO05D002193 3.2e-06 55.5 72 37.5
Thhalv10024709m.g Eutrema salsugineum HOM05D005767 ORTHO05D006785 4.2e-06 55.1 84 34.5
C03p27780 Brassica napus HOM05D005620 ORTHO05D002193 5.5e-06 54.7 72 36.1
Carub.0004s2376 Capsella rubella HOM05D005620 ORTHO05D002193 5.5e-06 54.7 72 36.1
AT4G36050 Arabidopsis thaliana HOM05D005767 ORTHO05D006785 7.1e-06 54.3 82 34.1
BcaC01g05336 Brassica carinata HOM05D005620 ORTHO05D002193 7.1e-06 54.3 72 36.1
A04p31630 Brassica napus HOM05D005620 ORTHO05D002193 7.1e-06 54.3 72 36.1
C04p69060 Brassica napus HOM05D005620 ORTHO05D002193 7.1e-06 54.3 72 36.1
BolC3t15148H Brassica oleracea HOM05D005620 ORTHO05D002193 7.1e-06 54.3 72 36.1
Hund16493 Selenicereus undatus HOM05D005767 ORTHO05D006785 7.1e-06 54.3 70 42.9
C01p02980 Brassica napus HOM05D005767 ORTHO05D006785 9.3e-06 53.9 82 34.1
BolC4t28403H Brassica oleracea HOM05D005620 ORTHO05D002193 9.3e-06 53.9 72 34.7
BraA01t00254Z Brassica rapa HOM05D005767 ORTHO05D006785 9.3e-06 53.9 82 34.1
BraA04t18621Z Brassica rapa HOM05D005620 ORTHO05D002193 9.3e-06 53.9 72 36.1
Manes.09G016000 Manihot esculenta HOM05D005620 ORTHO05D002193 9.3e-06 53.9 72 34.7
Potri.016G042000 Populus trichocarpa HOM05D005620 ORTHO05D002193 9.3e-06 53.9 73 37.0
Sp4g23730 Schrenkiella parvula HOM05D005620 ORTHO05D002193 9.3e-06 53.9 73 39.7


User provided reference genes

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