Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 2.8e-153 545.4 318 100.0
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.6e-116 423.3 288 83.7
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 2.8e-116 422.5 288 82.3
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 1.1e-107 394.0 288 79.2
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 6.9e-107 391.3 266 79.7
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 2.0e-106 389.8 266 79.3
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 2.6e-106 389.4 295 76.3
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 4.4e-106 388.7 288 77.4
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 9.9e-106 387.5 304 70.4
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 1.7e-105 386.7 288 74.7
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 4.9e-105 385.2 287 73.2
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 2.4e-104 382.9 288 74.3
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 9.3e-104 380.9 288 74.3
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 1.2e-103 380.6 266 78.9
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 2.1e-103 379.8 308 71.1
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 3.5e-103 379.0 266 80.1
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 2.3e-102 376.3 288 75.0
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 3.0e-102 375.9 288 75.0
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 3.9e-102 375.6 289 71.6
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 6.6e-102 374.8 266 78.9
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 2.5e-101 372.9 288 75.7
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 5.6e-101 371.7 265 75.1
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 5.6e-101 371.7 266 76.7
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.6e-101 370.9 288 71.5
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.6e-101 370.9 288 71.5
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 1.3e-100 370.5 288 70.5
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.3e-100 370.5 266 75.2
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 1.6e-100 370.2 266 74.8
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 2.1e-100 369.8 288 73.6
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 4.8e-100 368.6 287 73.9
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 4.8e-100 368.6 266 76.7
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 6.2e-100 368.2 266 78.6
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 8.1e-100 367.9 265 78.9
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 1.1e-99 367.5 261 80.1
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 1.8e-99 366.7 288 72.2
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.8e-99 366.7 290 73.4
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 3.1e-99 365.9 266 78.2
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 4.0e-99 365.5 271 74.2
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 6.9e-99 364.8 265 75.5
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 6.9e-99 364.8 266 76.3
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 6.9e-99 364.8 290 73.1
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 1.2e-98 364.0 271 73.4
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 2.0e-98 363.2 245 81.6
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 3.4e-98 362.5 266 72.9
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 4.5e-98 362.1 288 74.7
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 5.8e-98 361.7 266 73.7
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 7.6e-98 361.3 265 74.3
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 9.9e-98 360.9 261 73.2
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 2.2e-97 359.8 266 75.9
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 2.9e-97 359.4 265 76.2
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 8.4e-97 357.8 288 69.1
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 9.3e-96 354.4 298 71.8
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.2e-95 354.0 288 68.8
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.6e-95 353.6 288 68.4
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 4.6e-95 352.1 280 69.3
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 6.0e-95 351.7 268 75.0
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 7.9e-95 351.3 266 71.4
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 1.0e-94 350.9 266 74.4
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 1.3e-94 350.5 266 73.7
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 1.8e-94 350.1 266 74.8
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 3.0e-94 349.4 266 71.1
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 5.1e-94 348.6 266 74.4
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 6.7e-94 348.2 288 70.1
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 1.1e-93 347.4 265 72.1
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.5e-93 347.1 241 80.1
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 1.9e-93 346.7 266 72.6
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 4.3e-93 345.5 254 73.2
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 5.6e-93 345.1 266 71.8
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 1.3e-92 344.0 264 72.0
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 2.1e-92 343.2 276 71.7
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 4.8e-92 342.0 266 70.7
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 6.2e-92 341.7 256 73.0
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 8.1e-92 341.3 266 72.6
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 1.8e-91 340.1 268 73.1
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 2.4e-91 339.7 265 73.6
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 6.9e-91 338.2 252 72.2
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 1.2e-90 337.4 272 70.2
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 2.6e-90 336.3 243 76.5
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 3.4e-90 335.9 256 72.7
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 4.5e-90 335.5 260 71.9
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 9.9e-90 334.3 257 73.5
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 9.9e-90 334.3 257 73.5
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 1.7e-89 333.6 255 72.5
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 1.7e-89 333.6 243 76.1
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 1.7e-89 333.6 269 68.0
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 2.2e-89 333.2 266 71.4
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 2.9e-89 332.8 257 73.2
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 2.9e-89 332.8 257 73.2
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 3.8e-89 332.4 243 73.7
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 3.8e-89 332.4 243 73.7
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 3.8e-89 332.4 256 69.5
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 3.8e-89 332.4 265 69.8
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 4.9e-89 332.0 243 76.1
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 8.4e-89 331.3 243 73.7
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 8.4e-89 331.3 263 76.0
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 1.1e-88 330.9 243 75.7
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 1.9e-88 330.1 243 75.7
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 2.4e-88 329.7 243 73.7
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 4.2e-88 328.9 266 69.2
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 7.1e-88 328.2 264 69.3
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 8.7e-86 321.2 266 69.5
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 5.6e-85 318.5 260 70.4
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 1.6e-84 317.0 245 71.4
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 1.8e-83 313.5 267 70.0
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 2.4e-83 313.2 288 65.6
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 7.6e-82 308.1 261 69.3
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 2.2e-81 306.6 246 70.3
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 5.1e-78 295.4 211 81.5
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.5e-77 293.9 246 69.1
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 3.7e-76 289.3 238 68.9
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.4e-70 270.8 250 62.4
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.1e-69 267.7 257 63.0
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 4.8e-68 262.3 244 63.5
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 2.0e-66 256.9 153 90.8
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 7.7e-66 255.0 153 89.5
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 1.8e-62 243.8 229 63.8
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 3.0e-62 243.0 204 69.1
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 1.7e-60 237.3 289 51.2
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 4.5e-50 202.6 262 46.2
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 5.0e-49 199.1 182 57.1
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 8.5e-49 198.4 170 63.5
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 2.3e-46 190.3 153 69.9
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 6.7e-46 188.7 125 78.4
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 7.0e-43 178.7 153 64.7
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 4.5e-42 176.0 165 60.6
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 8.0e-39 165.2 288 41.3
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.0e-38 162.9 170 56.5
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 8.3e-36 155.2 170 54.1
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.1e-35 153.3 159 56.6
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 2.8e-31 140.2 236 38.1
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 6.8e-30 135.6 67 95.5
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 3.4e-29 133.3 105 64.8
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 7.0e-27 125.6 135 56.3
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 8.0e-23 112.1 121 56.2
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.2e-15 88.2 140 46.4
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 8.0e-15 85.5 114 50.0
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 5.2e-14 82.8 73 56.2
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 1.3e-12 78.2 42 85.7
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 4.9e-12 76.3 73 63.0
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 4.0e-06 56.6 38 73.7


User provided reference genes

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