Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 2.6e-298 1028.1 578 100.0
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 8.3e-228 793.9 504 92.1
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 3.2e-227 792.0 504 91.7
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 6.0e-226 787.7 504 91.7
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 3.3e-224 781.9 504 90.3
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.4e-222 776.5 504 85.5
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 1.8e-222 776.2 504 90.3
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 5.2e-222 774.6 504 90.9
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.2e-221 773.5 504 89.1
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 2.6e-221 772.3 504 88.9
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 3.4e-221 771.9 504 90.1
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 5.8e-221 771.2 504 88.9
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 1.4e-219 766.5 504 89.1
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 1.9e-219 766.1 504 88.7
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 5.4e-219 764.6 504 88.5
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.2e-218 763.5 516 87.2
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 1.6e-218 763.1 502 89.2
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 1.6e-218 763.1 504 83.5
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 2.7e-218 762.3 504 88.9
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 2.7e-218 762.3 504 88.1
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 4.6e-218 761.5 504 88.5
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 4.6e-218 761.5 504 88.5
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 7.8e-218 760.8 504 83.7
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.3e-217 760.0 504 83.5
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 1.3e-217 760.0 504 87.9
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 1.7e-217 759.6 504 87.7
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 1.7e-217 759.6 504 88.1
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 3.0e-217 758.8 504 87.9
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 5.1e-217 758.1 504 88.3
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 8.6e-217 757.3 504 89.1
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 8.6e-217 757.3 502 88.2
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 8.6e-217 757.3 504 88.3
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.1e-216 756.9 502 85.3
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 1.9e-216 756.1 504 87.7
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 2.5e-216 755.7 502 84.3
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 2.5e-216 755.7 527 76.3
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 3.3e-216 755.4 504 88.1
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 4.3e-216 755.0 504 88.1
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.2e-215 753.4 504 87.1
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.2e-215 753.4 504 86.3
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 1.6e-215 753.1 504 83.5
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 2.1e-215 752.7 504 87.7
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 2.8e-215 752.3 504 87.1
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 2.8e-215 752.3 504 88.1
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 4.7e-215 751.5 502 87.8
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 4.7e-215 751.5 504 86.1
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 4.7e-215 751.5 502 84.3
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.1e-214 750.4 504 87.5
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 1.4e-214 750.0 504 85.9
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 8.9e-214 747.3 504 85.5
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 2.0e-213 746.1 504 86.3
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 4.4e-213 745.0 504 87.7
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 4.4e-213 745.0 504 87.1
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 5.8e-213 744.6 504 86.1
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 9.9e-213 743.8 504 84.9
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.3e-212 743.4 504 87.1
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 3.8e-212 741.9 504 86.3
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 3.8e-212 741.9 504 82.1
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 8.4e-212 740.7 504 86.3
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 1.1e-211 740.3 516 84.1
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 1.1e-211 740.3 504 85.3
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 2.4e-211 739.2 504 85.1
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 3.2e-211 738.8 504 86.5
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 5.4e-211 738.0 500 85.6
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 2.7e-210 735.7 504 81.2
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 3.5e-210 735.3 504 86.5
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 4.6e-210 734.9 508 85.0
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 1.0e-209 733.8 504 86.7
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 1.0e-209 733.8 504 80.4
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 1.3e-209 733.4 504 79.8
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 2.3e-209 732.6 504 86.9
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 5.1e-209 731.5 504 85.5
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 5.1e-209 731.5 504 85.3
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 6.6e-209 731.1 504 85.3
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 1.9e-208 729.6 504 80.8
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 5.6e-208 728.0 503 80.7
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 1.6e-207 726.5 504 79.6
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 8.1e-207 724.2 504 85.7
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.1e-206 723.8 527 78.7
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 1.4e-206 723.4 504 80.0
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.4e-206 723.4 504 80.0
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 3.1e-206 722.2 504 82.3
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 4.0e-206 721.8 504 85.7
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 2.2e-204 716.1 504 83.7
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 9.3e-203 710.7 504 81.0
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 9.3e-203 710.7 485 86.0
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.6e-202 709.9 532 75.9
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 2.7e-202 709.1 435 96.1
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 7.9e-202 707.6 502 80.9
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 7.9e-202 707.6 502 80.9
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 1.8e-201 706.4 504 80.6
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.3e-199 700.3 504 78.8
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.1e-199 699.5 504 80.4
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.6e-199 698.7 500 84.4
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 4.8e-199 698.4 525 79.6
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 6.9e-198 694.5 524 77.9
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 6.4e-196 688.0 547 76.1
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 1.4e-195 686.8 504 81.7
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.4e-195 686.0 504 80.6
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 1.2e-194 683.7 518 82.0
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 3.0e-193 679.1 504 73.2
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 7.4e-192 674.5 484 83.1
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 2.4e-190 669.5 504 73.2
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 5.3e-190 668.3 504 78.6
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.3e-188 663.7 454 89.6
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 8.4e-188 661.0 542 67.7
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 1.8e-185 653.3 458 86.7
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.2e-179 632.5 504 79.0
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.8e-177 626.7 428 88.6
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 1.6e-175 620.2 430 87.2
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 2.9e-156 556.2 414 84.1
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 2.0e-152 543.5 504 65.1
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 1.1e-147 527.7 503 64.8
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 9.2e-134 481.5 258 90.7
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 1.2e-125 454.5 244 92.2
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 4.7e-122 442.6 322 80.4
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 4.7e-114 416.0 304 77.6
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 1.5e-107 394.4 374 59.4
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 5.1e-100 369.4 200 93.5
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 5.1e-100 369.4 200 93.5
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 1.4e-97 361.3 365 75.9
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.3e-79 301.6 257 77.4
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 1.4e-73 281.6 510 48.0
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 3.0e-68 263.8 174 83.3
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 3.3e-59 233.8 512 34.0
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 9.1e-57 225.7 124 92.7
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 3.8e-47 193.7 150 64.7
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 4.7e-45 186.8 99 84.8
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 8.2e-42 176.0 317 40.1
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 2.3e-36 157.9 80 90.0
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 2.2e-34 151.4 299 32.8
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 3.5e-32 144.1 137 62.8
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 3.8e-31 140.6 106 70.8
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 2.1e-29 134.8 70 94.3
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 3.6e-29 134.0 167 51.5
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 5.2e-28 130.2 72 87.5
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 8.3e-26 122.9 73 82.2
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 1.2e-24 119.0 86 68.6
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 1.2e-24 119.0 86 68.6
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 2.1e-21 108.2 56 87.5
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 3.7e-18 97.4 55 76.4
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 4.9e-18 97.1 56 73.2
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.7e-16 91.3 131 42.0
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 5.9e-16 90.1 47 95.7
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 2.9e-15 87.8 49 79.6
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 5.0e-15 87.0 75 57.3
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 5.0e-15 87.0 75 57.3
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 5.6e-14 83.6 49 75.5
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 2.3e-12 78.2 105 44.8
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 1.3e-10 72.4 36 83.3
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 2.3e-07 61.6 65 53.8
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 3.0e-07 61.2 134 59.0
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 8.6e-07 59.7 35 74.3
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 2.5e-06 58.2 25 96.0
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 5.6e-06 57.0 74 51.4
Lsat_1_v5_gn_3_52840 Lactuca sativa HOM05D004842 ORTHO05D005929 9.5e-06 56.2 35 68.6


User provided reference genes

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