Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 0.0e+00 1409.4 720 100.0
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 1.5e-303 1045.8 720 74.7
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 8.6e-291 1003.4 720 72.5
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 1.7e-278 962.6 720 68.9
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 1.9e-274 949.1 753 65.7
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 4.0e-272 941.4 807 66.5
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 6.9e-272 940.6 728 67.3
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 2.6e-271 938.7 720 68.2
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 6.4e-270 934.1 721 67.3
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 3.2e-269 931.8 720 66.7
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 2.1e-268 929.1 696 69.1
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 3.5e-268 928.3 720 67.4
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 4.3e-266 921.4 720 66.2
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 8.1e-265 917.1 720 66.0
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 8.1e-265 917.1 720 66.1
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 5.3e-264 914.4 720 65.1
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 2.6e-263 912.1 720 66.0
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 3.4e-263 911.8 720 66.7
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 1.7e-262 909.4 719 66.3
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 4.9e-262 907.9 720 65.6
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 8.4e-262 907.1 720 65.8
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 1.9e-261 906.0 720 65.3
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 1.2e-260 903.3 720 65.4
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 1.6e-260 902.9 720 64.6
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 3.5e-260 901.7 721 65.0
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 6.0e-260 901.0 720 64.9
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 7.9e-260 900.6 720 64.9
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 5.1e-259 897.9 702 67.0
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 8.7e-259 897.1 720 65.1
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 5.6e-258 894.4 720 63.6
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 9.6e-258 893.6 720 65.4
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 6.2e-257 891.0 720 64.2
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 8.2e-257 890.6 720 63.8
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 8.2e-257 890.6 719 63.6
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 1.1e-256 890.2 720 64.2
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 1.8e-256 889.4 719 63.6
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 2.7e-252 875.5 720 62.6
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 1.8e-251 872.8 720 63.3
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 5.1e-251 871.3 720 63.2
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 4.3e-250 868.2 720 63.5
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 7.4e-250 867.5 720 63.3
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 1.7e-246 856.3 719 61.9
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 3.2e-245 852.0 725 62.5
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 1.9e-242 842.8 720 62.6
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 5.7e-242 841.3 722 61.1
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 1.5e-239 833.2 720 60.1
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 5.0e-238 828.2 720 59.6
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 1.1e-237 827.0 720 60.0
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 1.9e-237 826.2 720 59.9
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 1.9e-237 826.2 717 60.4
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 5.5e-237 824.7 718 59.6
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 2.1e-236 822.8 722 60.7
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 4.6e-236 821.6 660 65.8
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 7.9e-236 820.8 720 59.6
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 1.0e-235 820.5 720 59.3
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 2.6e-234 815.8 681 63.6
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 5.7e-234 814.7 718 59.3
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 9.7e-234 813.9 720 59.0
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 2.8e-233 812.4 720 58.6
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 3.7e-233 812.0 721 59.5
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 4.8e-233 811.6 721 60.5
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 1.4e-232 810.1 572 73.1
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 5.9e-231 804.7 719 59.2
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.7e-230 803.1 721 59.2
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 1.9e-229 799.7 722 56.8
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 5.5e-229 798.1 732 58.9
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 4.7e-228 795.0 719 60.4
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 7.9e-228 794.3 720 59.0
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.7e-225 786.6 728 58.0
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 1.8e-224 783.1 720 57.2
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 6.5e-222 774.6 723 56.6
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 8.5e-222 774.2 720 56.9
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 1.4e-219 766.9 722 57.9
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 4.1e-216 755.4 700 58.6
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 1.2e-212 743.8 722 58.3
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 8.0e-212 741.1 737 55.6
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 9.1e-208 727.6 720 56.4
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 1.7e-198 696.8 682 56.9
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 1.8e-195 686.8 723 53.9
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 4.6e-191 672.2 736 54.1
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 5.0e-190 668.7 720 53.6
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 2.7e-175 619.8 463 68.9
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 4.6e-167 592.4 713 46.0
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 1.2e-154 551.2 469 60.8
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 1.9e-149 533.9 635 46.3
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 3.7e-148 529.6 635 45.8
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 2.0e-138 497.3 471 56.9
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 1.4e-136 491.1 727 41.0
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 2.5e-133 480.3 620 46.1
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 1.1e-128 464.9 348 68.1
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 3.1e-123 446.8 716 38.8
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 5.3e-123 446.0 720 40.6
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 9.1e-123 445.3 718 37.0
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 4.2e-120 436.4 331 68.9
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 2.8e-116 423.7 389 58.4
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 1.4e-110 404.8 315 63.8
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 1.8e-110 404.4 323 66.3
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 3.3e-109 400.2 360 60.0
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 2.8e-87 327.4 242 69.4
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 1.2e-85 322.0 302 55.3
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 1.6e-82 311.6 242 65.7
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 5.6e-80 303.1 297 57.2
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 7.3e-80 302.8 297 55.9
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 9.5e-72 275.8 228 62.3
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 6.2e-63 246.5 188 67.6
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 4.7e-55 220.3 188 59.6
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.9e-52 210.3 179 62.6
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 3.9e-49 200.7 136 73.5
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 6.6e-49 199.9 219 53.4
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 6.6e-49 199.9 184 56.5
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 3.4e-45 187.6 791 26.5
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 4.6e-42 177.2 147 62.6
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 1.0e-33 149.4 131 57.3
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 1.8e-30 138.7 669 23.3
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 1.1e-27 129.4 132 53.0
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 7.4e-24 116.7 84 64.3
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 1.1e-22 112.8 74 67.6
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 1.3e-17 95.9 66 71.2
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 8.7e-17 93.2 150 40.7
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 2.5e-16 91.7 785 21.9
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 9.7e-16 89.7 93 51.6
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 1.3e-15 89.4 87 56.3
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 2.2e-15 88.6 78 59.0
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 1.2e-13 82.8 51 70.6
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 1.9e-11 75.5 95 50.5
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 1.6e-10 72.4 79 50.6
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 1.0e-09 69.7 43 76.7
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 1.5e-08 65.9 87 44.8


User provided reference genes

Program Settings