Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 2.6e-257 891.7 514 100.0
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 8.7e-253 876.7 514 98.2
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 8.7e-253 876.7 514 98.2
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.5e-247 858.6 542 92.6
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 5.1e-245 850.9 514 96.7
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 1.0e-237 826.6 514 90.7
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.3e-235 819.7 514 89.5
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 2.8e-235 818.5 510 90.6
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 4.8e-235 817.8 511 90.6
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 2.0e-233 812.4 514 89.9
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.7e-232 809.3 510 89.8
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 2.9e-232 808.5 510 89.2
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 1.4e-231 806.2 509 88.6
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.0e-229 800.0 514 87.7
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 8.8e-229 797.0 513 87.7
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 2.0e-228 795.8 514 88.5
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 1.7e-227 792.7 511 87.9
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 1.1e-226 790.0 514 88.1
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 9.1e-226 786.9 527 81.4
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 3.4e-225 785.0 511 86.9
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 3.4e-225 785.0 514 88.1
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 3.2e-223 778.5 510 87.3
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 6.1e-222 774.2 512 86.1
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 1.8e-221 772.7 510 86.9
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 6.7e-221 770.8 514 84.4
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 9.7e-220 766.9 514 85.0
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 1.7e-219 766.1 514 84.2
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 2.2e-219 765.8 514 85.4
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 2.8e-219 765.4 514 85.0
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 4.8e-219 764.6 511 87.1
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 6.3e-219 764.2 514 85.4
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 6.3e-219 764.2 511 85.3
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 8.2e-219 763.8 514 85.4
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 8.2e-219 763.8 511 85.3
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 1.8e-218 762.7 513 85.0
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.8e-218 762.7 514 85.0
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 4.1e-218 761.5 512 85.7
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 7.0e-218 760.8 514 84.2
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 9.1e-218 760.4 514 84.2
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 9.1e-218 760.4 513 85.0
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 3.5e-217 758.4 514 84.0
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 3.5e-217 758.4 513 85.0
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 1.0e-216 756.9 513 84.4
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 1.0e-216 756.9 513 84.8
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.7e-216 756.1 513 84.8
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.7e-216 756.1 514 83.3
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.4e-215 753.1 514 84.2
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 1.4e-215 753.1 514 83.7
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 1.9e-215 752.7 514 84.6
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 3.2e-215 751.9 512 84.2
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 5.5e-215 751.1 512 84.8
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 1.6e-214 749.6 514 84.8
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 2.1e-214 749.2 512 86.1
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 2.1e-214 749.2 513 84.4
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 2.1e-214 749.2 504 84.5
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 2.7e-214 748.8 514 83.9
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 2.7e-214 748.8 512 84.2
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 1.8e-213 746.1 514 81.7
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 5.2e-213 744.6 511 80.0
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 5.2e-213 744.6 514 81.3
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 6.7e-213 744.2 511 84.0
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 8.8e-213 743.8 514 81.3
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 1.1e-212 743.4 514 83.7
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 1.5e-212 743.0 514 82.9
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 2.6e-212 742.3 511 82.0
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 3.3e-212 741.9 511 83.6
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 3.3e-212 741.9 514 78.2
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 4.4e-212 741.5 513 83.6
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 4.4e-212 741.5 514 82.7
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 9.7e-212 740.3 513 83.2
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 1.3e-211 740.0 514 82.1
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 2.2e-211 739.2 536 80.4
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 3.7e-211 738.4 509 83.5
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 3.7e-211 738.4 509 83.5
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 6.3e-211 737.6 511 83.2
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 6.3e-211 737.6 514 81.3
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 2.4e-210 735.7 511 81.2
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.2e-209 733.4 535 75.9
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.5e-209 731.9 504 83.9
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.9e-208 728.8 514 78.0
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 3.8e-208 728.4 504 80.8
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 3.8e-208 728.4 504 82.9
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 6.5e-208 727.6 514 82.9
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 8.5e-208 727.2 513 79.5
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 5.5e-207 724.5 515 80.2
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 1.6e-206 723.0 514 81.7
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 2.1e-206 722.6 514 81.5
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 8.0e-206 720.7 514 81.5
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.5e-204 716.5 500 79.8
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 9.7e-204 713.8 551 73.5
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 2.2e-203 712.6 520 80.6
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 9.1e-202 707.2 507 80.1
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 5.0e-200 701.4 514 78.2
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 6.8e-197 691.0 511 78.9
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.0e-196 689.5 509 80.4
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.0e-196 689.5 485 82.7
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.0e-193 679.5 514 73.9
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 3.5e-193 678.7 535 73.3
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 5.9e-193 677.9 525 77.0
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 3.8e-192 675.2 514 75.5
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 9.5e-191 670.6 557 70.7
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 8.0e-190 667.5 484 81.8
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 4.4e-188 661.8 514 74.3
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 1.4e-186 656.8 468 84.2
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 9.2e-186 654.1 464 84.7
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 4.5e-185 651.7 511 67.1
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.9e-176 622.1 513 74.7
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 1.1e-173 614.0 430 84.9
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 1.3e-171 607.1 435 79.1
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 5.1e-168 595.1 428 79.7
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 5.1e-160 568.5 511 65.4
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 2.6e-148 529.6 511 62.0
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.1e-146 524.2 404 77.7
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 6.9e-133 478.4 322 88.5
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 3.4e-132 476.1 268 87.7
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 3.2e-130 469.5 254 91.7
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 3.5e-121 439.5 331 77.6
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 9.4e-106 388.3 384 57.8
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 7.9e-105 385.2 210 92.9
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 1.8e-104 384.0 210 92.4
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 1.3e-83 314.7 365 64.7
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 5.0e-83 312.8 206 86.9
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 6.1e-73 279.3 257 66.9
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 3.0e-72 276.9 518 44.8
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 2.4e-61 240.7 134 91.8
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 5.4e-61 239.6 526 34.6
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 2.3e-51 207.6 253 43.9
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 3.3e-42 177.2 99 82.8
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.8e-41 174.1 108 79.6
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 4.2e-37 160.2 80 93.8
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 3.5e-36 157.1 107 79.4
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 4.3e-34 150.2 295 32.5
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 6.2e-33 146.4 80 90.0
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 2.0e-31 141.4 175 51.4
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 1.4e-29 135.2 137 59.1
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.3e-27 128.6 70 88.6
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 4.3e-26 123.6 69 88.4
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 7.4e-26 122.9 100 63.0
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 7.4e-26 122.9 100 63.0
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 3.6e-25 120.6 64 89.1
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 3.6e-25 120.6 64 89.1
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 2.1e-20 104.8 56 82.1
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 6.7e-19 99.8 56 75.0
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 3.3e-18 97.4 49 87.8
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 4.5e-15 87.0 43 86.0
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 8.4e-14 82.8 43 81.4
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.5e-13 81.3 47 85.1
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 3.2e-13 80.9 125 38.4
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 1.3e-11 75.5 105 41.9
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 3.9e-11 73.9 36 86.1
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 9.6e-10 69.3 134 57.5
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 1.0e-06 59.3 35 77.1
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 1.3e-06 58.9 25 96.0
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 1.7e-06 58.5 59 57.6


User provided reference genes

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