Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 6.7e-40 166.8 77 100.0
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.2e-14 82.0 61 60.7
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 3.7e-14 81.3 61 62.3
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 6.3e-14 80.5 55 69.1
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 6.3e-14 80.5 55 69.1
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 8.2e-14 80.1 54 70.4
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 2.4e-13 78.6 54 68.5
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 4.1e-13 77.8 54 66.7
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 9.1e-13 76.6 54 66.7
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 9.1e-13 76.6 61 54.1
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 9.1e-13 76.6 54 64.8
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.2e-12 76.3 61 55.7
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.5e-12 75.9 61 55.7
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.5e-12 75.9 54 64.8
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 2.0e-12 75.5 54 68.5
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.6e-12 75.1 54 64.8
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 2.6e-12 75.1 60 60.0
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.4e-12 74.7 61 55.7
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.4e-12 74.7 54 64.8
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 3.4e-12 74.7 61 60.7
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 3.4e-12 74.7 61 60.7
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 4.5e-12 74.3 54 66.7
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.5e-12 74.3 59 59.3
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 5.9e-12 73.9 59 59.3
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 5.9e-12 73.9 61 59.0
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 7.7e-12 73.6 61 50.8
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 7.7e-12 73.6 50 60.0
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 7.7e-12 73.6 61 57.4
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 7.7e-12 73.6 61 57.4
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 7.7e-12 73.6 61 55.7
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.7e-12 73.6 54 64.8
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.0e-11 73.2 47 70.2
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.3e-11 72.8 61 52.5
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.3e-11 72.8 59 57.6
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.3e-11 72.8 59 57.6
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.3e-11 72.8 54 63.0
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.7e-11 72.4 54 64.8
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 1.7e-11 72.4 50 60.0
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.7e-11 72.4 54 63.0
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.7e-11 72.4 61 54.1
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.7e-11 72.4 54 63.0
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 2.2e-11 72.0 61 54.1
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 2.2e-11 72.0 54 63.0
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 2.2e-11 72.0 54 64.8
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.2e-11 72.0 61 54.1
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 2.9e-11 71.6 61 54.1
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.9e-11 71.6 54 64.8
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 2.9e-11 71.6 63 52.4
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.9e-11 71.6 59 55.9
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.8e-11 71.2 54 61.1
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 3.8e-11 71.2 50 58.0
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 5.0e-11 70.9 54 63.0
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.0e-11 70.9 54 61.1
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 6.5e-11 70.5 50 58.0
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 6.5e-11 70.5 61 50.8
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 6.5e-11 70.5 51 58.8
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 6.5e-11 70.5 61 57.4
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 6.5e-11 70.5 51 60.8
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.1e-10 69.7 48 68.8
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.1e-10 69.7 61 54.1
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 1.1e-10 69.7 54 61.1
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-10 69.3 54 61.1
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.4e-10 69.3 62 53.2
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.4e-10 69.3 61 55.7
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.4e-10 69.3 54 61.1
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.4e-10 69.3 61 54.1
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.5e-10 68.6 61 50.8
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.5e-10 68.6 61 50.8
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 2.5e-10 68.6 61 52.5
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 2.5e-10 68.6 51 60.8
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.5e-10 68.6 54 61.1
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 2.5e-10 68.6 61 50.8
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 2.5e-10 68.6 51 60.8
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 2.5e-10 68.6 50 62.0
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.2e-10 68.2 61 50.8
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 3.2e-10 68.2 51 62.7
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 3.2e-10 68.2 51 60.8
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 3.2e-10 68.2 48 60.4
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 4.2e-10 67.8 51 64.7
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 4.2e-10 67.8 51 64.7
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 5.5e-10 67.4 61 47.5
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 5.5e-10 67.4 59 54.2
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.5e-10 67.4 59 54.2
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 5.5e-10 67.4 62 51.6
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 7.2e-10 67.0 51 58.8
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 7.2e-10 67.0 61 47.5
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 7.2e-10 67.0 54 61.1
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 9.4e-10 66.6 54 63.0
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 9.4e-10 66.6 52 59.6
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 9.4e-10 66.6 52 59.6
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 9.4e-10 66.6 62 53.2
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 9.4e-10 66.6 51 56.9
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.2e-09 66.2 62 53.2
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.2e-09 66.2 61 45.9
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.2e-09 66.2 61 45.9
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.6e-09 65.9 49 59.2
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.6e-09 65.9 54 59.3
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.6e-09 65.9 48 60.4
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 2.7e-09 65.1 51 60.8
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 3.6e-09 64.7 48 60.4
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 3.6e-09 64.7 51 60.8
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 4.6e-09 64.3 54 59.3
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 4.6e-09 64.3 48 60.4
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 4.6e-09 64.3 48 60.4
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 4.6e-09 64.3 54 59.3
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 4.6e-09 64.3 61 47.5
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 4.6e-09 64.3 51 56.9
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 4.6e-09 64.3 61 49.2
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 6.1e-09 63.9 62 53.2
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 6.1e-09 63.9 62 50.0
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 6.1e-09 63.9 61 45.9
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 6.1e-09 63.9 48 60.4
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 7.9e-09 63.5 49 57.1
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 7.9e-09 63.5 48 58.3
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 7.9e-09 63.5 62 51.6
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 7.9e-09 63.5 50 64.0
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.0e-08 63.2 48 60.4
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.0e-08 63.2 48 60.4
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 1.0e-08 63.2 54 57.4
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 1.0e-08 63.2 48 60.4
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 1.0e-08 63.2 48 60.4
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 1.4e-08 62.8 48 58.3
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.4e-08 62.8 48 58.3
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 1.4e-08 62.8 48 58.3
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 1.4e-08 62.8 48 58.3
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.4e-08 62.8 48 58.3
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.4e-08 62.8 61 47.5
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.4e-08 62.8 61 47.5
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.4e-08 62.8 54 57.4
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.8e-08 62.4 49 57.1
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.8e-08 62.4 55 47.3
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.3e-08 62.0 61 47.5
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 2.3e-08 62.0 51 56.9
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.0e-08 61.6 61 45.9
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 3.0e-08 61.6 48 58.3
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.1e-08 60.8 61 47.5
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 6.7e-08 60.5 49 55.1
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 6.7e-08 60.5 62 50.0
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 8.8e-08 60.1 49 53.1
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 8.8e-08 60.1 48 58.3
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.5e-07 59.3 61 44.3
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 1.5e-07 59.3 47 51.1
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 3.3e-07 58.2 56 50.0
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 5.7e-07 57.4 41 58.5
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 7.4e-07 57.0 49 57.1
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 9.7e-07 56.6 58 50.0
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.3e-06 56.2 47 55.3
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 2.2e-06 55.5 61 47.5
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 2.8e-06 55.1 51 52.9
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 2.8e-06 55.1 40 60.0
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 3.7e-06 54.7 54 57.4
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 4.8e-06 54.3 50 50.0


User provided reference genes

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