Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0015891 Rosa chinensis HOM05D005565 ORTHO05D006950 1.1e-194 683.3 392 100.0
FAN11G0475 Fragaria x ananassa HOM05D005565 ORTHO05D006950 2.0e-177 625.9 392 93.4
FAN21G3355 Fragaria x ananassa HOM05D005565 ORTHO05D006950 2.7e-177 625.5 392 92.6
FvH4_3g10030 Fragaria vesca HOM05D005565 ORTHO05D006950 1.3e-176 623.2 392 93.1
FAN16G1178 Fragaria x ananassa HOM05D005565 ORTHO05D006950 2.8e-174 615.5 396 92.2
Prupe.4G089800 Prunus persica HOM05D005565 ORTHO05D006950 1.5e-164 583.2 394 87.6
MD05G1274000 Malus domestica HOM05D005565 ORTHO05D006950 4.3e-159 565.1 393 85.8
QL05p061027 Quercus lobata HOM05D005565 ORTHO05D006950 1.9e-154 549.7 394 82.7
CiPaw.10G085900 Carya illinoinensis HOM05D005565 ORTHO05D006950 3.9e-152 542.0 396 83.6
Cfa000824 Carpinus fangiana HOM05D005565 ORTHO05D006950 6.8e-149 531.2 395 80.5
CANSAT35G0106 Cannabis sativa HOM05D005565 ORTHO05D006950 3.4e-148 528.9 392 82.1
VMungo0251G3128 Vigna mungo HOM05D005565 ORTHO05D006950 6.4e-147 524.6 392 79.8
CsaV3_6G052300 Cucumis sativus L. HOM05D005565 ORTHO05D006950 7.1e-146 521.2 397 79.1
MD10G1253700 Malus domestica HOM05D005565 ORTHO05D006950 1.2e-145 520.4 392 80.1
Glyma.07G224200 Glycine max HOM05D005565 ORTHO05D006950 2.1e-145 519.6 395 80.0
Cpa.g.sc17.91 Carica papaya HOM05D005565 ORTHO05D006950 6.0e-145 518.1 395 79.2
Thecc.06G001100 Theobroma cacao HOM05D005565 ORTHO05D006950 1.1e-143 513.8 398 79.1
Dinv06439 Davidia involucrata HOM05D005565 ORTHO05D006950 1.5e-143 513.5 390 79.7
CANSAT35G0536 Cannabis sativa HOM05D005565 ORTHO05D006950 2.5e-143 512.7 392 79.8
Medtr4g083380 Medicago truncatula HOM05D005565 ORTHO05D006950 4.3e-143 511.9 396 79.3
Duzib192G0128 Durio zibethinus HOM05D005565 ORTHO05D006950 1.4e-141 506.9 396 78.8
Aqoxy1G01543 Aquilegia oxysepala HOM05D005565 ORTHO05D006950 1.8e-141 506.5 400 76.5
MELO3C007079.2 Cucumis melo HOM05D005565 ORTHO05D006950 4.0e-141 505.4 417 75.3
TWI53G0754 Tripterygium wilfordii HOM05D005565 ORTHO05D006950 8.9e-141 504.2 392 78.1
THA.LOC104812687 Tarenaya hassleriana HOM05D005565 ORTHO05D006950 4.4e-140 501.9 393 78.4
TAR626G1362 Trochodendron aralioides HOM05D005565 ORTHO05D006950 1.7e-139 500.0 397 77.1
Glyma.20G024100 Glycine max HOM05D005565 ORTHO05D006950 3.8e-139 498.8 399 76.9
Aa31LG6G11740 Aethionema arabicum HOM05D005565 ORTHO05D006950 6.4e-139 498.0 390 77.9
ClCG01G025100 Citrullus lanatus HOM05D005565 ORTHO05D006950 6.4e-139 498.0 393 77.1
Psat7g132960 Pisum sativum HOM05D005565 ORTHO05D006950 6.4e-139 498.0 458 69.0
Phvul.002G100900 Phaseolus vulgaris HOM05D005565 ORTHO05D006950 2.4e-138 496.1 392 75.8
HPP92_019891 Vanilla planifolia HOM05D005565 ORTHO05D006950 3.2e-138 495.7 395 75.9
Nn3g20239 Nelumbo nucifera HOM05D005565 ORTHO05D006950 5.4e-138 495.0 402 76.6
Gorai.011G004100 Gossypium raimondii HOM05D005565 ORTHO05D006950 1.3e-136 490.3 399 77.7
Ca_18788_v3 Cicer arietinum L. HOM05D005565 ORTHO05D006950 3.9e-136 488.8 395 69.9
Gohir.A10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 8.7e-136 487.6 399 76.9
Sp1g26320 Schrenkiella parvula HOM05D005565 ORTHO05D006950 5.6e-135 485.0 391 75.4
Actinidia13472 Actinidia chinensis HOM05D005565 ORTHO05D006950 1.3e-134 483.8 393 72.0
arahy.Tifrunner.gnm1.ann1.V3UUHR Arachis hypogaea HOM05D005565 ORTHO05D006950 1.3e-134 483.8 405 74.8
Lj4g0020694 Lotus japonicus HOM05D005565 ORTHO05D006950 1.3e-134 483.8 401 75.6
arahy.Tifrunner.gnm1.ann1.59WFQY Arachis hypogaea HOM05D005565 ORTHO05D006950 1.6e-134 483.4 405 74.6
CARHR029890 Cardamine hirsuta HOM05D005565 ORTHO05D006950 2.8e-134 482.6 395 74.2
AT1G30480 Arabidopsis thaliana HOM05D005565 ORTHO05D006950 5.3e-133 478.4 397 73.6
Lj1A1162G46 Lonicera japonica HOM05D005565 ORTHO05D006950 1.5e-132 476.9 399 74.2
Atru.chr10.872 Acer truncatum HOM05D005565 ORTHO05D006950 3.4e-132 475.7 396 76.0
MBI10_g00722_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 9.9e-132 474.2 391 75.7
Sed0002078 Sechium edule HOM05D005565 ORTHO05D006950 1.7e-131 473.4 392 74.5
Carub.0001s2870 Capsella rubella HOM05D005565 ORTHO05D006950 3.8e-131 472.2 394 73.6
Thhalv10007861m.g Eutrema salsugineum HOM05D005565 ORTHO05D006950 2.4e-130 469.5 399 74.4
SHI20681 Sapria himalayana HOM05D005565 ORTHO05D006950 2.4e-130 469.5 391 72.4
Sc17g0004650 Simmondsia chinensis HOM05D005565 ORTHO05D006950 3.0e-128 462.6 406 72.4
Zm00001eb315350 Zea mays HOM05D005565 ORTHO05D006950 8.7e-128 461.1 391 70.3
C03p76800 Brassica napus HOM05D005565 ORTHO05D006950 1.1e-127 460.7 392 72.7
PSO541G0264 Papaver somniferum HOM05D005565 ORTHO05D006950 2.5e-127 459.5 406 72.7
Manes.06G055100 Manihot esculenta HOM05D005565 ORTHO05D006950 3.3e-127 459.1 391 71.9
PGR083G1318 Punica granatum HOM05D005565 ORTHO05D006950 9.6e-127 457.6 398 74.4
COL.COLO4_26828 Corchorus olitorius HOM05D005565 ORTHO05D006950 1.3e-126 457.2 395 67.1
Potri.001G372600 Populus trichocarpa HOM05D005565 ORTHO05D006950 3.6e-126 455.7 394 72.1
CSS0026797 Camellia sinensis var. sinensis HOM05D005565 ORTHO05D006950 4.8e-126 455.3 396 71.5
Lsat_1_v5_gn_1_117781 Lactuca sativa HOM05D005565 ORTHO05D006950 4.8e-126 455.3 401 70.1
PSO675G3222 Papaver somniferum HOM05D005565 ORTHO05D006950 1.2e-124 450.7 406 69.7
A08p24410 Brassica napus HOM05D005565 ORTHO05D006950 3.4e-124 449.1 390 69.7
Zm00001eb376390 Zea mays HOM05D005565 ORTHO05D006950 3.4e-124 449.1 394 68.5
Eucgr.D00186 Eucalyptus grandis HOM05D005565 ORTHO05D006950 4.5e-124 448.7 399 69.4
Sabra11G0084800 Salix brachista HOM05D005565 ORTHO05D006950 4.5e-124 448.7 418 66.5
Sabra11G0091000 Salix brachista HOM05D005565 ORTHO05D006950 1.3e-123 447.2 418 66.3
DCAR_027864 Daucus carota HOM05D005565 ORTHO05D006950 3.8e-123 445.7 399 71.2
Manes.14G122600 Manihot esculenta HOM05D005565 ORTHO05D006950 5.5e-122 441.8 385 69.4
vmacro03395 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 5.5e-122 441.8 395 72.9
Potri.011G098100 Populus trichocarpa HOM05D005565 ORTHO05D006950 9.3e-122 441.0 342 75.7
Rhsim13G0120300 Rhododendron simsii HOM05D005565 ORTHO05D006950 3.5e-121 439.1 393 72.5
Sabra16G0245100 Salix brachista HOM05D005565 ORTHO05D006950 9.6e-119 431.0 450 62.2
AL1G44510 Arabidopsis lyrata HOM05D005565 ORTHO05D006950 2.0e-116 423.3 398 67.8
SEGI_17605 Sequoiadendron giganteum HOM05D005565 ORTHO05D006950 2.0e-116 423.3 413 61.7
Hma1.2p1_0333F.1_g128300 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 4.9e-115 418.7 408 67.9
CAN.G954.26 Capsicum annuum HOM05D005565 ORTHO05D006950 3.9e-112 409.1 396 68.2
Cc09_g08070 Coffea canephora HOM05D005565 ORTHO05D006950 1.5e-111 407.1 406 67.2
Oeu041100.1 Olea europaea HOM05D005565 ORTHO05D006950 1.5e-111 407.1 402 68.2
ATR0165G027 Amborella trichopoda HOM05D005565 ORTHO05D006950 3.3e-111 406.0 409 64.3
EL10Ac8g19576 Beta vulgaris HOM05D005565 ORTHO05D006950 7.4e-111 404.8 410 63.9
BolC3t19934H Brassica oleracea HOM05D005565 ORTHO05D006950 9.6e-111 404.4 388 66.5
BcaNung05265 Brassica carinata HOM05D005565 ORTHO05D006950 2.8e-110 402.9 361 64.3
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 8.2e-110 401.4 396 64.6
BcaNung05264 Brassica carinata HOM05D005565 ORTHO05D006950 1.8e-109 400.2 388 66.0
Mapoly0023s0048 Marchantia polymorpha HOM05D005565 ORTHO05D006950 2.4e-109 399.8 450 60.0
HanXRQChr01g0003371 Helianthus annuus HOM05D005565 ORTHO05D006950 3.1e-109 399.4 410 62.7
Sopen02g018950 Solanum pennellii HOM05D005565 ORTHO05D006950 2.0e-108 396.7 410 64.6
A09p35980 Brassica napus HOM05D005565 ORTHO05D006950 5.9e-108 395.2 390 66.2
BraA09t39122Z Brassica rapa HOM05D005565 ORTHO05D006950 5.9e-108 395.2 390 66.2
MSTRG.14795 Avicennia marina HOM05D005565 ORTHO05D006950 1.0e-107 394.4 399 67.4
Solyc02g069790.3 Solanum lycopersicum HOM05D005565 ORTHO05D006950 1.7e-107 393.7 412 63.8
PGSC0003DMG400021191 Solanum tuberosum HOM05D005565 ORTHO05D006950 1.7e-107 393.7 406 64.3
Os01g0526100 Oryza sativa ssp. japonica HOM05D005565 ORTHO05D006950 3.2e-106 389.4 309 70.9
ECA240G3173 Erigeron canadensis HOM05D005565 ORTHO05D006950 1.8e-101 373.6 399 63.9
Pp3c2_18610 Physcomitrium patens HOM05D005565 ORTHO05D006950 1.7e-99 367.1 435 60.2
Oeu015183.1 Olea europaea HOM05D005565 ORTHO05D006950 5.0e-99 365.5 398 63.6
Peaxi162Scf00670g00348 Petunia axillaris HOM05D005565 ORTHO05D006950 3.2e-98 362.8 405 62.7
AUR62042519 Chenopodium quinoa HOM05D005565 ORTHO05D006950 7.2e-98 361.7 397 55.4
Migut.H01333 Erythranthe guttata HOM05D005565 ORTHO05D006950 7.2e-98 361.7 401 62.6
SGA_v2.0_scaffold1G00240 Striga asiatica HOM05D005565 ORTHO05D006950 5.1e-96 355.5 396 62.4
SGA_v2.0_scaffold223G42860 Striga asiatica HOM05D005565 ORTHO05D006950 8.8e-96 354.8 398 61.8
Haze_05807 Corylus avellana HOM05D005565 ORTHO05D006950 9.7e-95 351.3 304 77.3
FAN25G2018 Fragaria x ananassa HOM05D005565 ORTHO05D006950 2.8e-94 349.7 187 95.2
AagrBONN_evm.TU.Sc2ySwM_228.4814 Anthoceros agrestis HOM05D005565 ORTHO05D006950 1.8e-88 330.5 428 49.1
GSVIVG01021628001 Vitis vinifera HOM05D005565 ORTHO05D006950 3.5e-84 316.2 171 91.2
BraA08t34396Z Brassica rapa HOM05D005565 ORTHO05D006950 6.5e-83 312.0 389 54.0
CBR_g29718 Chara braunii HOM05D005565 ORTHO05D006950 6.5e-83 312.0 470 53.2
Gohir.D10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 8.0e-81 305.1 301 73.8
Nitab4.5_0004596g0030 Nicotiana tabacum HOM05D005565 ORTHO05D006950 3.0e-80 303.1 218 72.5
BcaB07g32683 Brassica carinata HOM05D005565 ORTHO05D006950 1.3e-78 297.7 390 52.1
BcaB07g32657 Brassica carinata HOM05D005565 ORTHO05D006950 7.2e-74 282.0 171 82.5
C05p29480 Brassica napus HOM05D005565 ORTHO05D006950 7.2e-74 282.0 171 82.5
BolC5t31678H Brassica oleracea HOM05D005565 ORTHO05D006950 7.2e-74 282.0 171 82.5
MBI18_g10581_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 3.6e-73 279.6 299 58.9
CDE10G1151 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 1.3e-70 271.2 394 50.5
Dinv23083 Davidia involucrata HOM05D005565 ORTHO05D006950 1.8e-69 267.3 293 68.3
CDE10G1222 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 9.1e-69 265.0 144 88.2
Lalb_Chr05g0219831 Lupinus albus HOM05D005565 ORTHO05D006950 2.3e-67 260.4 396 44.9
vmacro03441 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 7.2e-66 255.4 178 78.1
SMO351G0200 Selaginella moellendorffii HOM05D005565 ORTHO05D006950 2.7e-60 236.9 402 44.0
BcaC01g00198 Brassica carinata HOM05D005565 ORTHO05D006950 7.8e-60 235.3 143 81.1
Haze_05809 Corylus avellana HOM05D005565 ORTHO05D006950 8.9e-48 195.3 102 91.2
MCO12G324 Micromonas commoda HOM05D005565 ORTHO05D006950 8.3e-46 188.7 334 41.0
Cre11.g467591 Chlamydomonas reinhardtii HOM05D005565 ORTHO05D006950 6.0e-44 182.6 498 38.4
Hma1.2p1_0333F.1_g128290 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 8.6e-43 178.7 99 84.8
AUR62027340 Chenopodium quinoa HOM05D005565 ORTHO05D006950 2.5e-42 177.2 272 47.4
TPR.G34068 Trifolium pratense HOM05D005565 ORTHO05D006950 5.6e-42 176.0 184 72.8
Nitab4.5_0002719g0090 Nicotiana tabacum HOM05D005565 ORTHO05D006950 1.2e-39 168.3 97 80.4
BcaB07g32658 Brassica carinata HOM05D005565 ORTHO05D006950 2.6e-39 167.2 97 78.4
Haze_26712 Corylus avellana HOM05D005565 ORTHO05D006950 5.8e-39 166.0 174 51.7
C07p15100 Brassica napus HOM05D005565 ORTHO05D006950 3.9e-35 153.3 101 74.3
PRCOL_00005056 Prasinoderma coloniale HOM05D005565 ORTHO05D006950 6.9e-24 115.9 183 42.6
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 8.7e-19 99.0 109 44.0
BcaC01g00197 Brassica carinata HOM05D005565 ORTHO05D006950 1.1e-18 98.6 221 47.5
Ciclev10018985m.g Citrus clementina HOM05D000565 ORTHO05D003973 2.5e-18 97.4 119 52.1
SGA_v2.0_scaffold22G09881 Striga asiatica HOM05D005565 ORTHO05D006950 4.3e-18 96.7 97 49.5
CDE10G0349 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 9.6e-18 95.5 73 72.6
SGA_v2.0_scaffold273G46430 Striga asiatica HOM05D005565 ORTHO05D402892 9.6e-10 68.9 123 43.1
HanXRQChr09g0262121 Helianthus annuus HOM05D001563 ORTHO05D001956 2.8e-09 67.4 102 38.2
SGA_v2.0_scaffold74G24562 Striga asiatica HOM05D005565 ORTHO05D401758 3.7e-09 67.0 122 42.6
CBR_g28574 Chara braunii HOM05D000409 ORTHO05D001956 6.2e-09 66.2 132 31.1
SMO348G0102 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 6.2e-09 66.2 108 33.3
CBR_g28575 Chara braunii HOM05D001563 ORTHO05D001956 8.1e-09 65.9 103 35.9
Mapoly0038s0101 Marchantia polymorpha HOM05D001563 ORTHO05D001956 8.1e-09 65.9 108 33.3
Solyc12g008750.3 Solanum lycopersicum HOM05D001563 ORTHO05D001956 1.1e-08 65.5 103 31.1
Sopen12g003680 Solanum pennellii HOM05D001563 ORTHO05D001956 1.1e-08 65.5 103 31.1
PGSC0003DMG400000344 Solanum tuberosum HOM05D001563 ORTHO05D001956 1.8e-08 64.7 103 31.1
SEGI_22204 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 2.4e-08 64.3 102 35.3
CBR_g28571 Chara braunii HOM05D001563 ORTHO05D001956 4.0e-08 63.5 123 33.3
Nitab4.5_0005471g0020 Nicotiana tabacum HOM05D001563 ORTHO05D001956 4.0e-08 63.5 103 31.1
Nitab4.5_0000540g0190 Nicotiana tabacum HOM05D001563 ORTHO05D001956 5.3e-08 63.2 103 31.1
SMO201G0011 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 5.3e-08 63.2 111 37.8
HanXRQChr11g0324861 Helianthus annuus HOM05D001563 ORTHO05D001956 6.9e-08 62.8 98 36.7
ECA232G1424 Erigeron canadensis HOM05D001563 ORTHO05D001956 9.0e-08 62.4 102 36.3
Ca_19741_v3 Cicer arietinum L. HOM05D001563 ORTHO05D001956 1.2e-07 62.0 101 35.6
ATR0680G241 Amborella trichopoda HOM05D001563 ORTHO05D001956 1.5e-07 61.6 107 31.8
AagrBONN_evm.TU.Sc2ySwM_117.747 Anthoceros agrestis HOM05D001563 ORTHO05D001956 2.0e-07 61.2 104 33.7
MCO15G197 Micromonas commoda HOM05D002097 ORTHO05D004937 4.5e-07 60.1 101 33.7
Lsat_1_v5_gn_4_153381 Lactuca sativa HOM05D001563 ORTHO05D012319 5.8e-07 59.7 101 30.7
Nitab4.5_0004596g0040 Nicotiana tabacum HOM05D005565 ORTHO05D006950 7.6e-07 59.3 58 60.3
SEGI_35596 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 7.6e-07 59.3 100 35.0
SGA_v2.0_scaffold2G01114 Striga asiatica HOM05D001563 ORTHO05D001956 7.6e-07 59.3 120 28.3
Dinv26814 Davidia involucrata HOM05D001563 ORTHO05D001956 9.9e-07 58.9 100 34.0
Lalb_Chr15g0080491 Lupinus albus HOM05D001563 ORTHO05D001956 9.9e-07 58.9 100 32.0
Mapoly0038s0053 Marchantia polymorpha HOM05D001563 ORTHO05D001956 9.9e-07 58.9 107 32.7
Dinv20611 Davidia involucrata HOM05D001563 ORTHO05D001956 1.3e-06 58.5 96 32.3
Os11g0636900 Oryza sativa ssp. japonica HOM05D001563 ORTHO05D001956 1.3e-06 58.5 101 33.7
ECA232G2130 Erigeron canadensis HOM05D001563 ORTHO05D001956 1.7e-06 58.2 101 31.7
SGA_v2.0_scaffold221G42757 Striga asiatica HOM05D001563 ORTHO05D001956 1.7e-06 58.2 102 29.4
MELO3C013338.2 Cucumis melo HOM05D002097 ORTHO05D002248 2.9e-06 57.4 95 30.5
Lj4A198G29 Lonicera japonica HOM05D001563 ORTHO05D001956 2.9e-06 57.4 100 33.0
HanXRQChr11g0338681 Helianthus annuus HOM05D001563 ORTHO05D001956 3.8e-06 57.0 101 30.7
Nn5g29539 Nelumbo nucifera HOM05D001563 ORTHO05D001956 3.8e-06 57.0 97 35.1
Sabra11G0034400 Salix brachista HOM05D001563 ORTHO05D001956 3.8e-06 57.0 101 28.7
Phvul.005G001300 Phaseolus vulgaris HOM05D001563 ORTHO05D001956 4.9e-06 56.6 142 27.5
Potri.011G050400 Populus trichocarpa HOM05D001563 ORTHO05D001956 4.9e-06 56.6 101 27.7
Glyma.04G255700 Glycine max HOM05D001563 ORTHO05D001956 8.4e-06 55.8 142 27.5
HPP92_001601 Vanilla planifolia HOM05D001563 ORTHO05D001956 8.4e-06 55.8 101 33.7


User provided reference genes

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