Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 1.0e-141 506.9 285 100.0
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 6.3e-136 487.6 285 95.8
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 8.2e-136 487.3 284 95.8
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.3e-133 479.9 284 94.7
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 1.4e-119 433.3 285 84.9
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 1.2e-118 430.3 285 84.6
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 8.6e-117 424.1 288 84.4
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 1.2e-110 403.7 286 79.7
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 6.6e-109 397.9 288 79.9
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 8.0e-107 391.0 288 75.7
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 8.0e-107 391.0 287 76.7
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 1.0e-106 390.6 290 75.5
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 1.4e-106 390.2 288 80.6
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 9.8e-105 384.0 288 75.7
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 1.3e-104 383.6 288 76.7
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 2.2e-104 382.9 289 77.9
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 6.4e-104 381.3 288 78.5
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 1.4e-103 380.2 288 73.6
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 3.2e-103 379.0 281 79.7
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 3.2e-103 379.0 288 76.7
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 4.1e-103 378.6 288 73.6
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 4.1e-103 378.6 288 74.3
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 5.4e-103 378.3 288 74.0
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 7.0e-103 377.9 288 75.3
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 9.2e-103 377.5 289 76.1
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 9.2e-103 377.5 288 74.3
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 9.2e-103 377.5 316 74.1
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 1.2e-102 377.1 267 77.5
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 2.0e-102 376.3 289 76.5
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 4.6e-102 375.2 286 76.2
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 1.0e-101 374.0 280 77.9
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.0e-101 374.0 288 74.3
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.3e-101 372.9 288 73.3
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.3e-101 372.9 288 73.3
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 5.0e-101 371.7 288 74.0
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.5e-100 370.2 286 72.7
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 7.3e-100 367.9 286 74.8
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 9.5e-100 367.5 288 71.2
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 9.5e-100 367.5 289 75.1
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 1.2e-99 367.1 289 73.7
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 4.7e-99 365.2 291 73.9
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 8.0e-99 364.4 266 78.2
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 4.0e-98 362.1 288 74.3
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 5.2e-98 361.7 285 71.6
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 6.8e-98 361.3 289 75.1
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 8.9e-98 360.9 289 75.8
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 1.5e-97 360.1 289 72.7
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 1.5e-97 360.1 289 73.7
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 2.0e-97 359.8 288 70.8
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 9.8e-97 357.5 288 70.8
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 1.7e-96 356.7 285 71.6
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 1.7e-96 356.7 287 70.4
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 2.2e-96 356.3 288 72.2
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 2.9e-96 355.9 305 67.5
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 6.4e-96 354.8 243 78.2
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 8.3e-96 354.4 280 74.3
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 3.2e-95 352.4 288 70.5
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 4.1e-95 352.1 288 72.2
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 5.4e-95 351.7 286 69.9
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 5.4e-95 351.7 287 69.7
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 5.4e-95 351.7 277 71.5
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.2e-94 350.5 288 69.4
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 3.5e-94 349.0 280 70.4
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 3.5e-94 349.0 240 78.3
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 4.6e-94 348.6 257 77.8
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 4.6e-94 348.6 240 77.5
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 6.0e-94 348.2 240 81.2
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 6.0e-94 348.2 240 81.2
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 7.8e-94 347.8 246 79.3
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 7.8e-94 347.8 259 73.7
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 1.7e-93 346.7 246 79.3
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 2.3e-93 346.3 243 77.4
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 2.3e-93 346.3 308 68.2
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 3.0e-93 345.9 240 80.4
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 3.0e-93 345.9 257 74.7
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 3.0e-93 345.9 240 80.4
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 3.0e-93 345.9 257 74.7
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 3.9e-93 345.5 287 72.5
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 5.0e-93 345.1 257 76.7
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 5.0e-93 345.1 257 73.9
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 5.0e-93 345.1 246 78.5
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 6.6e-93 344.7 269 71.4
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 6.6e-93 344.7 288 70.5
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 1.5e-92 343.6 257 73.9
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.5e-92 343.6 296 70.6
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 3.3e-92 342.4 290 72.8
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 3.3e-92 342.4 239 77.0
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 9.5e-92 340.9 267 73.8
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 2.8e-91 339.3 295 65.8
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 4.7e-91 338.6 289 68.9
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 3.1e-90 335.9 285 69.1
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 5.2e-90 335.1 290 69.3
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 6.8e-90 334.7 241 78.8
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 4.4e-89 332.0 240 76.2
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 7.5e-89 331.3 277 71.1
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 2.4e-87 326.2 269 69.5
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 4.1e-87 325.5 289 66.4
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 7.1e-87 324.7 286 67.1
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 9.2e-87 324.3 286 71.0
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 2.1e-86 323.2 286 67.5
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 7.8e-86 321.2 286 67.1
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 1.9e-84 316.6 273 66.3
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 1.6e-83 313.5 267 70.0
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 7.6e-81 304.7 260 70.0
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.7e-77 293.5 260 68.8
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 1.1e-74 284.3 275 62.2
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 1.8e-74 283.5 212 78.3
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 2.6e-73 279.6 246 68.7
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 4.9e-72 275.4 253 64.0
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 5.1e-69 265.4 288 57.3
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 3.3e-68 262.7 153 92.8
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 5.6e-68 261.9 153 92.8
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.6e-65 253.1 279 58.1
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 7.6e-65 251.5 278 56.1
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 3.8e-64 249.2 258 58.1
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 2.0e-57 226.9 288 50.7
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 8.7e-53 211.5 229 61.6
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 1.9e-52 210.3 260 47.7
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 4.8e-51 205.7 187 64.7
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 8.2e-51 204.9 205 62.9
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 3.1e-50 203.0 166 68.1
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 4.0e-50 202.6 133 90.2
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 5.8e-49 198.7 192 54.7
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 7.1e-47 191.8 125 80.0
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 1.8e-45 187.2 153 68.6
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 5.7e-44 182.2 153 67.3
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 6.5e-40 168.7 166 61.4
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.0e-37 161.4 166 59.0
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 6.7e-37 158.7 166 58.4
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 5.0e-32 142.5 289 40.8
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 6.5e-32 142.1 237 38.0
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 4.2e-31 139.4 67 100.0
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 6.1e-30 135.6 105 67.6
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 1.1e-23 114.8 141 55.3
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 1.6e-17 94.4 138 50.0
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.7e-16 90.9 102 56.9
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 2.2e-16 90.5 73 61.6
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 2.6e-12 77.0 42 83.3
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 1.3e-08 64.7 75 50.7
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 1.9e-07 60.8 71 54.9
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 7.2e-07 58.9 173 31.8


User provided reference genes

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