Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0393341 Rosa chinensis HOM05D001363 ORTHO05D002212 1.2e-97 359.8 178 100.0
ClCG05G004820 Citrullus lanatus HOM05D001363 ORTHO05D002212 2.9e-30 136.0 135 53.3
Sed0025938 Sechium edule HOM05D001363 ORTHO05D002212 6.5e-30 134.8 135 52.6
RcHm_v2.0_Chr4g0393481 Rosa chinensis HOM05D001363 ORTHO05D002212 4.6e-28 128.6 185 44.9
FvH4_4g03620 Fragaria vesca HOM05D001363 ORTHO05D002212 1.3e-27 127.1 185 43.8
FvH4_4g03740 Fragaria vesca HOM05D001363 ORTHO05D002212 1.3e-27 127.1 185 44.3
FAN12G0492 Fragaria x ananassa HOM05D001363 ORTHO05D002212 1.3e-27 127.1 185 43.8
AUR62034680 Chenopodium quinoa HOM05D001363 ORTHO05D002212 1.8e-27 126.7 162 47.5
RcHm_v2.0_Chr4g0392991 Rosa chinensis HOM05D001363 ORTHO05D002212 2.3e-27 126.3 185 44.3
Lalb_Chr21g0304801 Lupinus albus HOM05D001363 ORTHO05D002212 3.0e-27 125.9 164 46.3
CANSAT78G1246 Cannabis sativa HOM05D001363 ORTHO05D002212 3.3e-26 122.5 185 42.2
PSO210G1487 Papaver somniferum HOM05D001363 ORTHO05D002212 4.3e-26 122.1 185 42.2
PSO461G0042 Papaver somniferum HOM05D001363 ORTHO05D002212 4.3e-26 122.1 185 42.2
VMungo0720G0234 Vigna mungo HOM05D001363 ORTHO05D002212 5.7e-26 121.7 185 42.2
CiPaw.02G119800 Carya illinoinensis HOM05D001363 ORTHO05D002212 7.4e-26 121.3 185 42.2
Dinv44580 Davidia involucrata HOM05D001363 ORTHO05D002212 7.4e-26 121.3 185 42.2
Lsat_1_v5_gn_7_66001 Lactuca sativa HOM05D001363 ORTHO05D002212 9.7e-26 120.9 185 42.2
MD16G1200300 Malus domestica HOM05D001363 ORTHO05D002212 9.7e-26 120.9 185 42.2
Ca_10819_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 1.3e-25 120.6 185 41.6
Ca_28386_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 1.3e-25 120.6 185 41.6
THA.LOC104808576 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 1.7e-25 120.2 185 42.2
TWI53G1709 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 1.7e-25 120.2 185 41.6
AUR62005320 Chenopodium quinoa HOM05D001363 ORTHO05D002212 2.2e-25 119.8 185 41.6
Gohir.A02G034500 Gossypium hirsutum HOM05D001363 ORTHO05D002212 2.2e-25 119.8 185 42.2
Gohir.D02G041300 Gossypium hirsutum HOM05D001363 ORTHO05D002212 2.2e-25 119.8 185 42.2
Gorai.005G045700 Gossypium raimondii HOM05D001363 ORTHO05D002212 2.2e-25 119.8 185 42.2
Medtr1g102670 Medicago truncatula HOM05D001363 ORTHO05D002212 2.2e-25 119.8 185 41.6
CSS0014402 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D002212 2.8e-25 119.4 185 41.1
ECA240G4262 Erigeron canadensis HOM05D001363 ORTHO05D002212 2.8e-25 119.4 185 41.6
Manes.03G172700 Manihot esculenta HOM05D001363 ORTHO05D002212 2.8e-25 119.4 185 41.6
QL06p000836 Quercus lobata HOM05D001363 ORTHO05D002212 2.8e-25 119.4 185 41.6
SalBow2G1003 Salvia bowleyana HOM05D001363 ORTHO05D002212 2.8e-25 119.4 185 41.6
TWI09G0463 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 2.8e-25 119.4 185 41.6
GSVIVG01018051001 Vitis vinifera HOM05D001363 ORTHO05D002212 2.8e-25 119.4 185 41.6
Thhalv10021068m.g Eutrema salsugineum HOM05D001363 ORTHO05D002212 3.7e-25 119.0 185 41.1
HanXRQChr03g0062511 Helianthus annuus HOM05D001363 ORTHO05D002212 3.7e-25 119.0 185 41.6
Sp3g20580 Schrenkiella parvula HOM05D001363 ORTHO05D002212 3.7e-25 119.0 185 41.1
AL3G37220 Arabidopsis lyrata HOM05D001363 ORTHO05D002212 4.8e-25 118.6 185 40.5
AT3G22880 Arabidopsis thaliana HOM05D001363 ORTHO05D002212 4.8e-25 118.6 185 40.5
Cc03_g04350 Coffea canephora HOM05D001363 ORTHO05D002212 4.8e-25 118.6 185 41.6
COL.COLO4_21574 Corchorus olitorius HOM05D001363 ORTHO05D002212 4.8e-25 118.6 185 41.6
DCAR_002364 Daucus carota HOM05D001363 ORTHO05D002212 4.8e-25 118.6 185 41.6
RhsimUnG0023700 Rhododendron simsii HOM05D001363 ORTHO05D002212 4.8e-25 118.6 185 41.1
RhsimUnG0184600 Rhododendron simsii HOM05D001363 ORTHO05D002212 4.8e-25 118.6 185 41.1
Solyc09g082790.4 Solanum lycopersicum HOM05D001363 ORTHO05D002212 4.8e-25 118.6 185 41.6
Sopen09g031640 Solanum pennellii HOM05D001363 ORTHO05D002212 4.8e-25 118.6 185 41.6
SGA_v2.0_scaffold191G40421 Striga asiatica HOM05D001363 ORTHO05D002212 4.8e-25 118.6 185 41.6
THA.LOC104803046 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 4.8e-25 118.6 185 41.1
THA.LOC104804919 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 4.8e-25 118.6 185 41.1
Thecc.04G239600 Theobroma cacao HOM05D001363 ORTHO05D002212 4.8e-25 118.6 185 41.6
Phvul.007G062500 Phaseolus vulgaris HOM05D001363 ORTHO05D002212 6.3e-25 118.2 185 41.1
Psat6g203440 Pisum sativum HOM05D001363 ORTHO05D002212 6.3e-25 118.2 185 41.6
Rhsim02G0029900 Rhododendron simsii HOM05D001363 ORTHO05D002212 6.3e-25 118.2 184 41.3
Ciclev10006682m.g Citrus clementina HOM05D001363 ORTHO05D002212 8.2e-25 117.9 185 41.1
Potri.010G081500 Populus trichocarpa HOM05D001363 ORTHO05D002212 8.2e-25 117.9 185 40.5
Prupe.1G022500 Prunus persica HOM05D001363 ORTHO05D002212 8.2e-25 117.9 185 41.1
Aqoxy2G03469 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 1.1e-24 117.5 185 40.5
arahy.Tifrunner.gnm1.ann1.MX9883 Arachis hypogaea HOM05D001363 ORTHO05D002212 1.1e-24 117.5 185 40.5
AUR62013971 Chenopodium quinoa HOM05D001363 ORTHO05D002212 1.1e-24 117.5 185 41.1
Sc13g0004780 Simmondsia chinensis HOM05D001363 ORTHO05D002212 1.1e-24 117.5 185 40.5
TPR.G26112 Trifolium pratense HOM05D001363 ORTHO05D002212 1.1e-24 117.5 185 41.1
EL10Ac3g06502 Beta vulgaris HOM05D001363 ORTHO05D002212 1.4e-24 117.1 189 40.7
BcaB03g14645 Brassica carinata HOM05D001363 ORTHO05D002212 1.4e-24 117.1 185 40.0
Carub.0003s2301 Capsella rubella HOM05D001363 ORTHO05D002212 1.4e-24 117.1 185 40.0
PGSC0003DMG400030167 Solanum tuberosum HOM05D001363 ORTHO05D002212 1.4e-24 117.1 185 41.1
Duzib212G0488 Durio zibethinus HOM05D001363 ORTHO05D002212 1.8e-24 116.7 185 41.6
Lj6A646T83 Lonicera japonica HOM05D001363 ORTHO05D002212 1.8e-24 116.7 185 41.1
Sabra08G0120800 Salix brachista HOM05D001363 ORTHO05D002212 1.8e-24 116.7 186 39.8
SGA_v2.0_scaffold353G49716 Striga asiatica HOM05D001363 ORTHO05D002212 1.8e-24 116.7 185 41.1
TAR636G1108 Trochodendron aralioides HOM05D001363 ORTHO05D002212 1.8e-24 116.7 185 38.9
Atru.chr4.2332 Acer truncatum HOM05D001363 ORTHO05D002212 2.4e-24 116.3 185 40.0
Atru.chr4.2334 Acer truncatum HOM05D001363 ORTHO05D002212 2.4e-24 116.3 185 40.0
CARHR098810 Cardamine hirsuta HOM05D001363 ORTHO05D002212 2.4e-24 116.3 185 40.0
Migut.G00388 Erythranthe guttata HOM05D001363 ORTHO05D002212 2.4e-24 116.3 185 41.1
Oeu017766.1 Olea europaea HOM05D001363 ORTHO05D002212 2.4e-24 116.3 185 41.6
Peaxi162Scf00316g00323 Petunia axillaris HOM05D001363 ORTHO05D002212 2.4e-24 116.3 201 39.3
Aa31LG8G9380 Aethionema arabicum HOM05D001363 ORTHO05D002212 3.1e-24 115.9 193 39.4
Gohir.D09G221800 Gossypium hirsutum HOM05D001363 ORTHO05D002212 3.1e-24 115.9 185 41.6
vmacro15377 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 5.3e-24 115.2 185 40.5
CARHR265640 Cardamine hirsuta HOM05D001363 ORTHO05D002212 9.1e-24 114.4 185 39.5
Lj5g0010655 Lotus japonicus HOM05D001363 ORTHO05D002212 9.1e-24 114.4 185 40.0
BcaB04g20490 Brassica carinata HOM05D001363 ORTHO05D002212 1.5e-23 113.6 185 38.9
BcaC09g49214 Brassica carinata HOM05D001363 ORTHO05D002212 1.5e-23 113.6 185 38.9
A01p32310 Brassica napus HOM05D001363 ORTHO05D002212 1.5e-23 113.6 185 38.9
C01p41330 Brassica napus HOM05D001363 ORTHO05D002212 1.5e-23 113.6 185 38.9
BolC1t04092H Brassica oleracea HOM05D001363 ORTHO05D002212 1.5e-23 113.6 185 38.9
BraA01t03357Z Brassica rapa HOM05D001363 ORTHO05D002212 1.5e-23 113.6 185 38.9
Nn1g02467 Nelumbo nucifera HOM05D001363 ORTHO05D002212 1.5e-23 113.6 185 40.0
CsaV3_3G012860 Cucumis sativus L. HOM05D001363 ORTHO05D002212 2.0e-23 113.2 185 38.9
CDE10G0279 Ceratophyllum demersum HOM05D001363 ORTHO05D002212 2.6e-23 112.8 185 38.9
Nitab4.5_0007166g0010 Nicotiana tabacum HOM05D001363 ORTHO05D002212 2.6e-23 112.8 199 38.7
PGR142G0038 Punica granatum HOM05D001363 ORTHO05D002212 2.6e-23 112.8 185 39.5
Haze_11238 Corylus avellana HOM05D001363 ORTHO05D002212 3.4e-23 112.5 185 39.5
Gohir.A09G219600 Gossypium hirsutum HOM05D001363 ORTHO05D002212 3.4e-23 112.5 185 40.5
vmacro15381 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 3.4e-23 112.5 185 40.0
arahy.Tifrunner.gnm1.ann1.QPK5VU Arachis hypogaea HOM05D001363 ORTHO05D002212 4.5e-23 112.1 194 38.1
Cpa.g.sc44.128 Carica papaya HOM05D001363 ORTHO05D002212 4.5e-23 112.1 185 40.0
MELO3C006496.2 Cucumis melo HOM05D001363 ORTHO05D002212 4.5e-23 112.1 185 38.4
SHI00528 Sapria himalayana HOM05D001363 ORTHO05D002212 4.5e-23 112.1 204 37.3
Gorai.006G243000 Gossypium raimondii HOM05D001363 ORTHO05D002212 7.7e-23 111.3 185 41.1
Nitab4.5_0002652g0020 Nicotiana tabacum HOM05D001363 ORTHO05D002212 1.0e-22 110.9 199 38.2
ATR0665G613 Amborella trichopoda HOM05D001363 ORTHO05D002212 1.7e-22 110.2 185 38.9
Zm00001eb163340 Zea mays HOM05D001363 ORTHO05D002212 1.7e-22 110.2 183 38.3
Glyma.10G243200 Glycine max HOM05D001363 ORTHO05D002212 6.5e-22 108.2 172 41.9
FAN22G0300 Fragaria x ananassa HOM05D001363 ORTHO05D002212 8.5e-22 107.8 183 41.0
Os11g0146800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 8.5e-22 107.8 185 37.8
MBI11_g21320_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D002212 1.1e-21 107.5 185 36.8
Os12g0143800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 1.4e-21 107.1 185 37.8
HPP92_020346 Vanilla planifolia HOM05D001363 ORTHO05D002212 2.5e-21 106.3 185 37.3
CAN.G1435.9 Capsicum annuum HOM05D001363 ORTHO05D002212 4.2e-21 105.5 198 37.9
FAN17G1407 Fragaria x ananassa HOM05D001363 ORTHO05D002212 9.4e-21 104.4 183 39.9
Ah.04g154310 Amaranthus hybridus HOM05D001363 ORTHO05D002212 2.1e-20 103.2 217 34.6
Aqoxy7G01707 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 2.7e-20 102.8 185 36.2
CARHR050050 Cardamine hirsuta HOM05D001363 ORTHO05D002212 6.1e-20 101.7 172 39.5
Duzib151G0676 Durio zibethinus HOM05D001363 ORTHO05D002212 1.0e-19 100.9 173 39.3
unitig_32.g11721 Utricularia gibba HOM05D001363 ORTHO05D002212 1.8e-19 100.1 201 35.3
Zm00001eb237850 Zea mays HOM05D001363 ORTHO05D002212 2.3e-19 99.8 159 39.6
Zm00001eb234890 Zea mays HOM05D001363 ORTHO05D002212 6.7e-19 98.2 125 47.2
Mapoly0110s0049 Marchantia polymorpha HOM05D001363 ORTHO05D002212 9.1e-16 87.8 185 31.9
Pp3c20_7190 Physcomitrium patens HOM05D001363 ORTHO05D002212 1.5e-15 87.0 183 33.3
Ca_10841_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 2.5e-13 79.7 99 45.5
Sabra10G0061400 Salix brachista HOM05D001363 ORTHO05D002212 3.2e-13 79.3 127 44.9
FAN17G1768 Fragaria x ananassa HOM05D002547 ORTHO05D002649 1.6e-12 77.0 38 94.7
RcHm_v2.0_Chr4g0387531 Rosa chinensis HOM05D001363 ORTHO05D050725 2.1e-12 76.6 81 56.8
Potri.008G158500 Populus trichocarpa HOM05D001363 ORTHO05D002212 1.0e-11 74.3 44 77.3
RcHm_v2.0_Chr4g0391091 Rosa chinensis HOM05D001363 ORTHO05D002212 3.0e-11 72.8 38 89.5
RcHm_v2.0_Chr4g0393441 Rosa chinensis HOM05D001363 ORTHO05D002212 3.9e-11 72.4 118 42.4
Oeu064244.1 Olea europaea HOM05D001363 ORTHO05D002212 2.0e-10 70.1 54 63.0
Eucgr.F02361 Eucalyptus grandis HOM05D001363 ORTHO05D002212 4.4e-10 68.9 54 61.1
Duzib268G1866 Durio zibethinus HOM05D001363 ORTHO05D002212 2.2e-09 66.6 41 73.2
Medtr5g091610 Medicago truncatula HOM05D001363 ORTHO05D006839 2.8e-09 66.2 41 73.2
CBR_g8885 Chara braunii HOM05D001363 ORTHO05D002212 1.4e-08 63.9 104 36.5
Psat7g146120 Pisum sativum HOM05D001363 ORTHO05D002212 1.8e-08 63.5 41 73.2
AUR62042983 Chenopodium quinoa HOM05D001363 ORTHO05D002212 2.6e-07 59.7 96 41.7
Eucgr.L02861 Eucalyptus grandis HOM05D001363 ORTHO05D002212 5.9e-07 58.5 40 70.0
CBR_g49283 Chara braunii HOM05D001363 ORTHO05D002212 2.9e-06 56.2 144 30.6
Eucgr.B00968 Eucalyptus grandis HOM05D001363 ORTHO05D002212 2.9e-06 56.2 33 78.8
BcaB06g26403 Brassica carinata HOM05D001363 ORTHO05D002212 6.5e-06 55.1 110 38.2


User provided reference genes

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