Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0494631 Rosa chinensis HOM05D003327 ORTHO05D004535 2.7e-175 618.6 320 100.0
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 2.5e-133 479.2 374 72.2
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 8.2e-100 367.9 380 57.9
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 5.7e-69 265.4 355 45.1
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.4e-67 260.8 296 51.0
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 3.1e-59 233.0 357 40.9
RcHm_v2.0_Chr6g0275041 Rosa chinensis HOM05D003327 ORTHO05D004535 1.7e-57 227.3 380 39.7
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 4.2e-56 222.6 374 40.9
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 5.5e-56 222.2 362 40.6
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 9.5e-56 221.5 322 44.1
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 9.5e-56 221.5 374 40.6
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 9.5e-56 221.5 397 39.3
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 1.2e-55 221.1 374 40.6
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.2e-55 221.1 374 40.6
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 2.8e-55 219.9 355 40.6
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 3.6e-55 219.5 355 40.6
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 4.7e-55 219.2 355 40.0
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 6.1e-55 218.8 357 40.6
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 6.1e-55 218.8 355 40.0
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 6.1e-55 218.8 374 39.8
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 1.4e-54 217.6 355 39.7
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 1.4e-54 217.6 355 39.7
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 1.8e-54 217.2 355 40.0
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 2.3e-54 216.9 355 39.7
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 2.3e-54 216.9 355 39.7
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 2.3e-54 216.9 374 39.0
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 3.0e-54 216.5 355 40.0
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 3.0e-54 216.5 355 40.0
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 3.0e-54 216.5 397 39.0
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 4.0e-54 216.1 360 40.0
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 4.0e-54 216.1 355 39.7
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 4.0e-54 216.1 355 40.0
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 5.2e-54 215.7 355 40.3
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 5.2e-54 215.7 360 39.7
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 6.8e-54 215.3 374 39.0
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 1.2e-53 214.5 355 39.4
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.2e-53 214.5 389 37.8
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.2e-53 214.5 389 37.8
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 2.0e-53 213.8 355 40.8
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 2.0e-53 213.8 355 39.4
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 4.4e-53 212.6 337 40.9
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 9.8e-53 211.5 355 39.2
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 1.3e-52 211.1 355 39.7
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 1.3e-52 211.1 355 39.7
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 1.7e-52 210.7 403 38.2
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 2.2e-52 210.3 355 38.3
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 2.2e-52 210.3 355 39.7
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 3.7e-52 209.5 368 38.9
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 3.7e-52 209.5 358 39.1
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 3.7e-52 209.5 355 40.0
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 4.9e-52 209.1 364 38.5
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 1.1e-51 208.0 355 39.2
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 1.4e-51 207.6 398 37.7
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 1.8e-51 207.2 355 38.9
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 3.1e-51 206.5 355 40.0
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 3.1e-51 206.5 355 39.4
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 4.1e-51 206.1 397 38.0
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 4.1e-51 206.1 355 39.7
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 5.4e-51 205.7 355 39.7
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 7.0e-51 205.3 358 38.0
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 7.0e-51 205.3 398 37.2
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 7.0e-51 205.3 348 38.5
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 9.2e-51 204.9 355 38.0
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 1.2e-50 204.5 353 39.7
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 1.2e-50 204.5 374 39.0
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 1.2e-50 204.5 374 39.0
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 1.2e-50 204.5 357 38.4
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 1.2e-50 204.5 355 38.6
Ah.08g216420 Amaranthus hybridus HOM05D003327 ORTHO05D004535 1.6e-50 204.1 355 39.2
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 1.6e-50 204.1 355 38.6
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 1.6e-50 204.1 355 37.5
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 3.5e-50 203.0 355 38.0
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 4.5e-50 202.6 397 37.0
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 4.5e-50 202.6 356 39.9
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 4.5e-50 202.6 355 36.9
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 5.9e-50 202.2 355 39.2
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 5.9e-50 202.2 355 38.0
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 7.8e-50 201.8 355 38.3
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 7.8e-50 201.8 355 38.3
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.0e-49 201.4 355 38.9
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 1.3e-49 201.1 397 37.0
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 1.3e-49 201.1 355 38.9
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.7e-49 200.7 358 38.3
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 2.3e-49 200.3 355 38.6
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 2.9e-49 199.9 355 38.6
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 3.8e-49 199.5 373 37.8
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 3.8e-49 199.5 355 37.7
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 1.1e-48 198.0 355 38.0
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 1.9e-48 197.2 355 38.6
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 3.3e-48 196.4 355 37.7
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 3.3e-48 196.4 355 37.7
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 4.3e-48 196.1 355 38.3
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 4.3e-48 196.1 355 37.5
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 5.6e-48 195.7 353 38.2
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 5.6e-48 195.7 353 38.2
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 5.6e-48 195.7 355 37.5
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 7.3e-48 195.3 397 36.5
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 9.5e-48 194.9 375 36.3
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 1.2e-47 194.5 355 38.0
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 1.6e-47 194.1 378 35.7
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 2.1e-47 193.7 362 37.6
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 3.6e-47 193.0 389 35.7
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 4.7e-47 192.6 353 38.0
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 6.1e-47 192.2 391 35.0
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 8.0e-47 191.8 355 37.2
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 1.0e-46 191.4 354 37.0
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 2.3e-46 190.3 340 38.2
CAN.G248.36 Capsicum annuum HOM05D003327 ORTHO05D004535 5.2e-46 189.1 355 36.9
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 6.8e-46 188.7 397 36.3
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 6.8e-46 188.7 343 38.5
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 8.9e-46 188.3 355 36.6
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.2e-45 188.0 354 36.2
ECA238G3940 Erigeron canadensis HOM05D003327 ORTHO05D004535 1.5e-45 187.6 289 40.8
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 2.0e-45 187.2 353 36.8
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 4.4e-45 186.0 361 35.7
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 4.4e-45 186.0 351 37.6
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 2.2e-44 183.7 372 35.5
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 6.4e-44 182.2 349 36.7
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 2.4e-43 180.3 369 36.0
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 2.0e-42 177.2 355 36.3
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 3.5e-42 176.4 369 35.0
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 2.3e-41 173.7 334 36.5
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 6.2e-39 165.6 332 35.5
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 4.0e-38 162.9 315 35.2
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 1.2e-37 161.4 362 33.7
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 1.2e-37 161.4 362 33.7
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 1.5e-37 161.0 330 35.2
PRCOL_00002302 Prasinoderma coloniale HOM05D003327 ORTHO05D004535 2.0e-37 160.6 354 32.8
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 7.5e-37 158.7 340 33.8
Dinv12916 Davidia involucrata HOM05D003327 ORTHO05D004535 5.0e-33 146.0 259 37.8
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 1.5e-32 144.4 166 51.8
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 4.3e-32 142.9 378 32.3
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 5.6e-32 142.5 163 53.4
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 1.6e-31 141.0 360 31.9
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 8.1e-31 138.7 350 32.3
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 1.4e-30 137.9 382 31.9
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 1.2e-29 134.8 386 32.4
Rhsim05G0038800 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.0e-29 134.0 249 37.8
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 5.4e-27 125.9 358 30.4
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 9.2e-27 125.2 379 29.8
Nn2g15286 Nelumbo nucifera HOM05D003327 ORTHO05D004535 1.1e-24 118.2 171 45.0
HanXRQChr01g0023131 Helianthus annuus HOM05D003327 ORTHO05D004535 4.3e-24 116.3 303 32.3
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 2.2e-20 104.0 89 64.0
Lalb_Chr24g0399861 Lupinus albus HOM05D003327 ORTHO05D004535 2.4e-19 100.5 137 43.8
Lalb_Chr24g0399871 Lupinus albus HOM05D003327 ORTHO05D004535 3.5e-18 96.7 174 38.5
C03p36760 Brassica napus HOM05D003327 ORTHO05D004535 1.7e-17 94.4 88 51.1
BolC3t15990H Brassica oleracea HOM05D003327 ORTHO05D004535 1.7e-17 94.4 88 51.1
BcaC01g06672 Brassica carinata HOM05D003327 ORTHO05D004535 2.3e-17 94.0 88 51.1
BcaC01g06678 Brassica carinata HOM05D003327 ORTHO05D004535 2.3e-17 94.0 88 51.1
C03p36710 Brassica napus HOM05D003327 ORTHO05D004535 2.3e-17 94.0 88 51.1
BolC3t15985H Brassica oleracea HOM05D003327 ORTHO05D004535 2.3e-17 94.0 88 51.1
A03p30430 Brassica napus HOM05D003327 ORTHO05D004535 1.9e-16 90.9 88 48.9
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 1.9e-16 90.9 263 30.4
BraA03t12222Z Brassica rapa HOM05D003327 ORTHO05D004535 1.6e-15 87.8 83 50.6
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 2.1e-15 87.4 328 25.0
Lj1g0006616 Lotus japonicus HOM05D003327 ORTHO05D004535 2.8e-15 87.0 241 30.3
ATR0661G363 Amborella trichopoda HOM05D003327 ORTHO05D004535 1.2e-13 81.6 127 41.7
Cfa006419 Carpinus fangiana HOM05D003327 ORTHO05D014278 4.4e-13 79.7 92 48.9
HanXRQChr04g0102061 Helianthus annuus HOM05D003327 ORTHO05D004535 3.2e-11 73.6 224 28.6
HanXRQChr04g0102071 Helianthus annuus HOM05D003327 ORTHO05D004535 3.2e-11 73.6 224 28.6
HanXRQChr13g0424861 Helianthus annuus HOM05D003327 ORTHO05D004535 3.2e-11 73.6 224 28.6
HanXRQChr13g0424841 Helianthus annuus HOM05D003327 ORTHO05D004535 4.2e-11 73.2 224 29.0
HanXRQChr00c0158g0572131 Helianthus annuus HOM05D003327 ORTHO05D004535 8.7e-09 65.5 224 27.7
BcaB01g02535 Brassica carinata HOM05D003327 ORTHO05D024129 7.3e-08 62.4 40 67.5
SEGI_03770 Sequoiadendron giganteum HOM05D003327 ORTHO05D004535 1.8e-06 57.8 113 39.8
EL10Ac9g22810 Beta vulgaris HOM05D003327 ORTHO05D004535 3.1e-06 57.0 131 28.2
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 4.0e-06 56.6 182 30.2


User provided reference genes

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