Gene: AT4G03430

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G03430
  • Transcript Identifier AT4G03430.2
  • Gene Type Coding gene
  • Location Chr4 : 1517411-1520500 : negative

Gene Family Information

  • ID HOM05D003327
  • #Genes/#Species 205/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G03430.2
  • symbol EMB2770
  • Alias STA1,STABILIZED 1
  • full_name EMBRYO DEFECTIVE 2770
  • uniprot E1A949

Descriptions

  • Description pre-mRNA splicing factor-like protein
  • Computational description EMBRYO DEFECTIVE 2770 (EMB2770); FUNCTIONS IN: binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold, response to abiotic stimulus; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Ubiquitin supergroup (InterPro:IPR019955), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: beta-galactosidase 14 (TAIR:AT4G38590.1); Has 3874 Blast hits to 2098 proteins in 386 species: Archae - 98; Bacteria - 366; Metazoa - 1194; Fungi - 916; Plants - 656; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000244
IBA
Gene Ontologyspliceosomal tri-snRNP complex assembly1
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
ISS, IBA
Gene OntologymRNA splicing, via spliceosome1 2
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:2000630
IMP
IBA
Gene Ontologypositive regulation of miRNA metabolic process1 3
GO:2000636
IMP
IBA
Gene Ontologypositive regulation of primary miRNA processing1 3
GO:0080188
IMP
IBA
Gene Ontologygene silencing by RNA-directed DNA methylation1 4
GO:0009845
IMP
Gene Ontologyseed germination5
GO:0009409
IMP
Gene Ontologyresponse to cold2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding6
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1
GO:0046540
IBA
Gene OntologyU4/U6 x U5 tri-snRNP complex1
GO:0005634
IDA
ISM
Gene Ontologynucleus2
GO:0015030
IDA
Gene OntologyCajal body4
GO:0005681
IDA
Gene Ontologyspliceosomal complex4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR019734 Tetratricopeptide repeat
IPR027108 Pre-mRNA-processing factor 6/Prp1/STA1
IPR010491 PRP1 splicing factor, N-terminal
IPR045075 Pre-mRNA-splicing factor Syf1-like
IPR003107 HAT (Half-A-TPR) repeat
Mapman id Description
16.2.1.4.5 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF6/PRP1/STA1)