Gene: Solyc07g054200.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g054200.4
  • Transcript Identifier Solyc07g054200.4.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 62480704-62483862 : positive

Gene Family Information

  • ID HOM05D003327
  • #Genes/#Species 205/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g054200.4.1
  • uniprot A0A3Q7I980
  • gene_id Solyc07g054200

Descriptions

  • Description Pre-mRNA splicing factor (AHRD V3.3 *-* E5GCN8_CUCME)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT4G03430
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT4G03430
GO:0000398
IBA
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0000244
IBA
GOA Databasespliceosomal tri-snRNP complex assembly
GO:2000636
IBA
GOA Databasepositive regulation of primary miRNA processing
GO:2000630
IBA
GOA Databasepositive regulation of miRNA metabolic process
GO:0080188
IBA
GOA Databasegene silencing by RNA-directed DNA methylation
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046540
IBA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0005681
ISO
PLAZA Integrative Orthologyspliceosomal complex AT4G03430
GO:0015030
ISO
PLAZA Integrative OrthologyCajal body AT4G03430
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR029071 Ubiquitin-like domain superfamily
IPR000626 Ubiquitin-like domain
IPR003107 HAT (Half-A-TPR) repeat
IPR027108 Pre-mRNA-processing factor 6/Prp1/STA1
IPR045075 Pre-mRNA-splicing factor Syf1-like
IPR010491 PRP1 splicing factor, N-terminal
Mapman id Description
16.2.1.4.5 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF6/PRP1/STA1)