Gene: Phvul.005G104900

General Information

Structural Information

  • Species Phaseolus vulgaris
  • Gene Identifier Phvul.005G104900
  • Transcript Identifier Phvul.005G104900.1
  • Gene Type Coding gene
  • Location Chr05 : 32443424-32446549 : positive

Gene Family Information

  • ID HOM05D003327
  • #Genes/#Species 205/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Phvul.005G104900.v2.1
  • pacid 37154018

Descriptions

  • Description K12855 - pre-mRNA-processing factor 6 (PRPF6, PRP6)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006396
IEA
InterProRNA processing
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT4G03430
GO:2000636
ISO
PLAZA Integrative Orthologypositive regulation of primary miRNA processing AT4G03430
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT4G03430
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT4G03430
GO:2000630
ISO
PLAZA Integrative Orthologypositive regulation of miRNA metabolic process AT4G03430

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G03430
GO:0015030
ISO
PLAZA Integrative OrthologyCajal body AT4G03430
GO:0005681
ISO
PLAZA Integrative Orthologyspliceosomal complex AT4G03430

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR010491 PRP1 splicing factor, N-terminal
IPR019734 Tetratricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR045075 Pre-mRNA-splicing factor Syf1-like
IPR027108 Pre-mRNA-processing factor 6/Prp1/STA1
IPR029071 Ubiquitin-like domain superfamily
IPR003107 HAT (Half-A-TPR) repeat
Mapman id Description
16.2.1.4.5 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF6/PRP1/STA1)