Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0103111 Rosa chinensis HOM05D001458 ORTHO05D006787 9.0e-62 240.0 112 100.0
CAN.G350.46 Capsicum annuum HOM05D001458 ORTHO05D006787 2.1e-18 95.9 102 48.0
Ciclev10011761m.g Citrus clementina HOM05D001458 ORTHO05D006787 2.1e-18 95.9 102 48.0
Solyc09g007210.4 Solanum lycopersicum HOM05D001458 ORTHO05D006787 2.1e-18 95.9 102 47.1
Sopen09g002080 Solanum pennellii HOM05D001458 ORTHO05D006787 2.1e-18 95.9 102 47.1
PGSC0003DMG400027900 Solanum tuberosum HOM05D001458 ORTHO05D006787 2.1e-18 95.9 102 47.1
Nitab4.5_0000848g0150 Nicotiana tabacum HOM05D001458 ORTHO05D006787 3.6e-18 95.1 102 48.0
Nitab4.5_0006316g0010 Nicotiana tabacum HOM05D001458 ORTHO05D006787 3.6e-18 95.1 102 48.0
PGR004G0986 Punica granatum HOM05D001458 ORTHO05D006787 4.7e-18 94.7 102 48.0
GSVIVG01025540001 Vitis vinifera HOM05D001458 ORTHO05D006787 6.1e-18 94.4 102 47.1
CiPaw.09G182000 Carya illinoinensis HOM05D001458 ORTHO05D006787 8.0e-18 94.0 102 47.1
MELO3C003071.2 Cucumis melo HOM05D001458 ORTHO05D006787 1.0e-17 93.6 102 47.1
CsaV3_4G024390 Cucumis sativus L. HOM05D001458 ORTHO05D006787 1.0e-17 93.6 102 47.1
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 1.0e-17 93.6 102 47.1
Prupe.6G243200 Prunus persica HOM05D001458 ORTHO05D006787 1.0e-17 93.6 102 48.0
Sed0021994 Sechium edule HOM05D001458 ORTHO05D006787 1.0e-17 93.6 102 47.1
ClCG04G008770 Citrullus lanatus HOM05D001458 ORTHO05D006787 1.4e-17 93.2 102 47.1
Cfa017488 Carpinus fangiana HOM05D001458 ORTHO05D006787 2.3e-17 92.4 102 47.1
Cre02.g084800 Chlamydomonas reinhardtii HOM05D001458 ORTHO05D006787 2.3e-17 92.4 95 50.5
Haze_20671 Corylus avellana HOM05D001458 ORTHO05D006787 2.3e-17 92.4 102 47.1
Actinidia11230 Actinidia chinensis HOM05D001458 ORTHO05D006787 3.0e-17 92.0 102 47.1
AagrBONN_evm.TU.Sc2ySwM_228.407 Anthoceros agrestis HOM05D001458 ORTHO05D006787 3.0e-17 92.0 102 46.1
Mapoly0114s0011 Marchantia polymorpha HOM05D001458 ORTHO05D006787 3.0e-17 92.0 100 48.0
Cc06_g03430 Coffea canephora HOM05D001458 ORTHO05D006787 4.0e-17 91.7 102 47.1
Peaxi162Scf01517g00015 Petunia axillaris HOM05D001458 ORTHO05D006787 5.2e-17 91.3 102 45.1
TWI18G0556 Tripterygium wilfordii HOM05D001458 ORTHO05D006787 6.7e-17 90.9 100 46.0
CANSAT80G0404 Cannabis sativa HOM05D001458 ORTHO05D006787 8.8e-17 90.5 102 47.1
Nn2g10614 Nelumbo nucifera HOM05D001458 ORTHO05D006787 8.8e-17 90.5 102 45.1
Aa31LG1G22080 Aethionema arabicum HOM05D001458 ORTHO05D006787 1.2e-16 90.1 100 47.0
Lj3A977T51 Lonicera japonica HOM05D001458 ORTHO05D006787 1.2e-16 90.1 102 46.1
Pp3c8_12030 Physcomitrium patens HOM05D001458 ORTHO05D006787 1.2e-16 90.1 100 46.0
QL07p045562 Quercus lobata HOM05D001458 ORTHO05D006787 1.2e-16 90.1 102 44.1
SMO266G0075 Selaginella moellendorffii HOM05D001458 ORTHO05D006787 1.2e-16 90.1 102 44.1
arahy.Tifrunner.gnm1.ann1.YX38EM Arachis hypogaea HOM05D001458 ORTHO05D006787 1.5e-16 89.7 102 45.1
Eucgr.K03202 Eucalyptus grandis HOM05D001458 ORTHO05D006787 2.0e-16 89.4 100 46.0
Hma1.2p1_0350F.1_g132690 Hydrangea macrophylla HOM05D001458 ORTHO05D006787 2.0e-16 89.4 102 46.1
Sabra06G0104100 Salix brachista HOM05D001458 ORTHO05D006787 2.0e-16 89.4 100 47.0
TAR369G1107 Trochodendron aralioides HOM05D001458 ORTHO05D006787 2.0e-16 89.4 102 44.1
HPP92_003602 Vanilla planifolia HOM05D001458 ORTHO05D006787 2.0e-16 89.4 102 45.1
AL6G12090 Arabidopsis lyrata HOM05D001458 ORTHO05D006787 2.6e-16 89.0 100 46.0
AT5G02820 Arabidopsis thaliana HOM05D001458 ORTHO05D006787 2.6e-16 89.0 100 46.0
A10p32900 Brassica napus HOM05D001458 ORTHO05D006787 2.6e-16 89.0 100 46.0
C09p73830 Brassica napus HOM05D001458 ORTHO05D006787 2.6e-16 89.0 100 46.0
BolC9t60117H Brassica oleracea HOM05D001458 ORTHO05D006787 2.6e-16 89.0 100 46.0
BraA10t45327Z Brassica rapa HOM05D001458 ORTHO05D006787 2.6e-16 89.0 100 46.0
CSS0026634 Camellia sinensis var. sinensis HOM05D001458 ORTHO05D006787 2.6e-16 89.0 102 46.1
Carub.0006s0162 Capsella rubella HOM05D001458 ORTHO05D006787 2.6e-16 89.0 100 46.0
CARHR210510 Cardamine hirsuta HOM05D001458 ORTHO05D006787 2.6e-16 89.0 100 46.0
Thhalv10015802m.g Eutrema salsugineum HOM05D001458 ORTHO05D006787 2.6e-16 89.0 100 46.0
Lj5g0024683 Lotus japonicus HOM05D001458 ORTHO05D006787 2.6e-16 89.0 102 46.1
Oeu034821.1 Olea europaea HOM05D001458 ORTHO05D006787 2.6e-16 89.0 100 46.0
PSO339G6008 Papaver somniferum HOM05D001458 ORTHO05D006787 2.6e-16 89.0 102 45.1
PSO384G1578 Papaver somniferum HOM05D001458 ORTHO05D006787 2.6e-16 89.0 102 45.1
Sp6g39760 Schrenkiella parvula HOM05D001458 ORTHO05D006787 2.6e-16 89.0 100 46.0
Sc07g0006220 Simmondsia chinensis HOM05D001458 ORTHO05D006787 2.6e-16 89.0 100 47.0
THA.LOC104816314 Tarenaya hassleriana HOM05D001458 ORTHO05D006787 2.6e-16 89.0 100 46.0
Ah.15g092050 Amaranthus hybridus HOM05D001458 ORTHO05D006787 3.3e-16 88.6 100 46.0
Manes.09G070800 Manihot esculenta HOM05D001458 ORTHO05D006787 3.3e-16 88.6 100 45.0
SEGI_09198 Sequoiadendron giganteum HOM05D001458 ORTHO05D006787 3.3e-16 88.6 100 45.0
ATR0594G128 Amborella trichopoda HOM05D001458 ORTHO05D006787 4.4e-16 88.2 102 46.1
AUR62040528 Chenopodium quinoa HOM05D001458 ORTHO05D006787 4.4e-16 88.2 100 45.0
AUR62042916 Chenopodium quinoa HOM05D001458 ORTHO05D006787 4.4e-16 88.2 100 45.0
Gohir.D04G116300 Gossypium hirsutum HOM05D001458 ORTHO05D006787 4.4e-16 88.2 100 45.0
Gorai.009G420900 Gossypium raimondii HOM05D001458 ORTHO05D006787 4.4e-16 88.2 100 45.0
RhsimUnG0119500 Rhododendron simsii HOM05D001458 ORTHO05D006787 4.4e-16 88.2 102 46.1
Aqoxy4G03150 Aquilegia oxysepala HOM05D001458 ORTHO05D006787 5.7e-16 87.8 102 45.1
DCAR_009271 Daucus carota HOM05D001458 ORTHO05D006787 5.7e-16 87.8 102 45.1
Migut.L01653 Erythranthe guttata HOM05D001458 ORTHO05D006787 5.7e-16 87.8 100 45.0
HanXRQChr02g0051861 Helianthus annuus HOM05D001458 ORTHO05D006787 5.7e-16 87.8 102 46.1
Lsat_1_v5_gn_6_29580 Lactuca sativa HOM05D001458 ORTHO05D006787 5.7e-16 87.8 102 46.1
Psat0ss6317g0080 Pisum sativum HOM05D001458 ORTHO05D006787 5.7e-16 87.8 102 44.1
Glyma.10G048300 Glycine max HOM05D001458 ORTHO05D006787 7.5e-16 87.4 102 45.1
Glyma.13G136100 Glycine max HOM05D001458 ORTHO05D006787 7.5e-16 87.4 102 45.1
MD04G1113900 Malus domestica HOM05D001458 ORTHO05D006787 7.5e-16 87.4 101 46.5
Os03g0284800 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D006787 7.5e-16 87.4 102 46.1
Potri.006G132600 Populus trichocarpa HOM05D001458 ORTHO05D006787 7.5e-16 87.4 100 46.0
SGA_v2.0_scaffold94G28657 Striga asiatica HOM05D001458 ORTHO05D006787 7.5e-16 87.4 100 46.0
TPR.G35661 Trifolium pratense HOM05D001458 ORTHO05D006787 7.5e-16 87.4 102 45.1
VMungo0464G1099 Vigna mungo HOM05D001458 ORTHO05D006787 7.5e-16 87.4 102 45.1
arahy.Tifrunner.gnm1.ann1.DP4C8A Arachis hypogaea HOM05D001458 ORTHO05D006787 9.7e-16 87.0 102 44.1
BcaC06g32012 Brassica carinata HOM05D001458 ORTHO05D006787 9.7e-16 87.0 99 45.5
Duzib128G1651 Durio zibethinus HOM05D001458 ORTHO05D006787 9.7e-16 87.0 100 45.0
ECA233G5957 Erigeron canadensis HOM05D001458 ORTHO05D006787 9.7e-16 87.0 102 45.1
Thecc.05G052100 Theobroma cacao HOM05D001458 ORTHO05D006787 9.7e-16 87.0 100 45.0
Zm00001eb013040 Zea mays HOM05D001458 ORTHO05D006787 9.7e-16 87.0 102 45.1
EL10Ac7g17326 Beta vulgaris HOM05D001458 ORTHO05D006787 1.3e-15 86.7 100 44.0
Phvul.007G162700 Phaseolus vulgaris HOM05D001458 ORTHO05D006787 1.3e-15 86.7 102 44.1
Cpa.g.sc45.25 Carica papaya HOM05D001458 ORTHO05D006787 1.7e-15 86.3 100 44.0
CBR_g20285 Chara braunii HOM05D001458 ORTHO05D006787 1.7e-15 86.3 99 45.5
Ca_02309_v3 Cicer arietinum L. HOM05D001458 ORTHO05D006787 1.7e-15 86.3 102 44.1
Lalb_Chr21g0314581 Lupinus albus HOM05D001458 ORTHO05D006787 1.7e-15 86.3 102 44.1
MBI14_g28308_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D006787 1.7e-15 86.3 102 44.1
Medtr1g067040 Medicago truncatula HOM05D001458 ORTHO05D006787 1.7e-15 86.3 102 44.1
FvH4_1g22710 Fragaria vesca HOM05D001458 ORTHO05D006787 6.3e-15 84.3 102 45.1
FAN19G2582 Fragaria x ananassa HOM05D001458 ORTHO05D006787 6.3e-15 84.3 102 45.1
FAN23G1932 Fragaria x ananassa HOM05D001458 ORTHO05D006787 6.3e-15 84.3 102 45.1
FAN26G1855 Fragaria x ananassa HOM05D001458 ORTHO05D006787 6.3e-15 84.3 102 45.1
arahy.Tifrunner.gnm1.ann1.TU257H Arachis hypogaea HOM05D001458 ORTHO05D006787 8.2e-15 84.0 102 43.1
RcHm_v2.0_Chr2g0116961 Rosa chinensis HOM05D001458 ORTHO05D006787 8.2e-15 84.0 102 44.1
SalBow4G2907 Salvia bowleyana HOM05D001458 ORTHO05D006787 8.2e-15 84.0 100 44.0
COL.COLO4_27103 Corchorus olitorius HOM05D001458 ORTHO05D006787 1.4e-14 83.2 100 44.0
MCO01G458 Micromonas commoda HOM05D001458 ORTHO05D006787 2.4e-14 82.4 101 43.6
Atru.BG.202.p Acer truncatum HOM05D001458 ORTHO05D006787 5.3e-14 81.3 100 45.0
vmacro20070 Vaccinium macrocarpon HOM05D001458 ORTHO05D006787 7.0e-14 80.9 114 42.1
RcHm_v2.0_Chr5g0083311 Rosa chinensis HOM05D001458 ORTHO05D020639 2.7e-13 79.0 105 38.1
RcHm_v2.0_Chr5g0062071 Rosa chinensis HOM05D001458 ORTHO05D029446 5.9e-13 77.8 96 40.6
CDE04G2715 Ceratophyllum demersum HOM05D001458 ORTHO05D006787 1.3e-12 76.6 88 44.3
FvH4_2g03881 Fragaria vesca HOM05D001458 ORTHO05D006787 1.3e-12 76.6 99 38.4
RcHm_v2.0_Chr3g0447681 Rosa chinensis HOM05D001458 ORTHO05D006787 2.5e-11 72.4 97 39.2
RcHm_v2.0_Chr5g0010071 Rosa chinensis HOM05D001458 ORTHO05D006787 4.2e-11 71.6 76 39.5
FvH4_3g06060 Fragaria vesca HOM05D001458 ORTHO05D006787 1.2e-10 70.1 93 36.6
PRCOL_00005653 Prasinoderma coloniale HOM05D001458 ORTHO05D006787 1.6e-10 69.7 116 34.5
Gohir.A04G077200 Gossypium hirsutum HOM05D001458 ORTHO05D006787 8.0e-10 67.4 76 44.7
RcHm_v2.0_Chr2g0089291 Rosa chinensis HOM05D001458 ORTHO05D020639 8.0e-10 67.4 104 39.4
Aqoxy1G04244 Aquilegia oxysepala HOM05D001458 ORTHO05D007170 3.0e-09 65.5 101 29.7
CANSAT11G0117 Cannabis sativa HOM05D001458 ORTHO05D007170 8.8e-09 63.9 109 30.3
Cc05_g14850 Coffea canephora HOM05D001458 ORTHO05D007170 1.2e-08 63.5 101 29.7
HanXRQChr05g0161861 Helianthus annuus HOM05D001458 ORTHO05D007170 1.5e-08 63.2 101 30.7
Hund01905 Selenicereus undatus HOM05D001458 ORTHO05D007170 1.5e-08 63.2 98 28.6
CiPaw.11G202700 Carya illinoinensis HOM05D001458 ORTHO05D007170 2.6e-08 62.4 109 29.4
SGA_v2.0_scaffold171G38881 Striga asiatica HOM05D003514 ORTHO05D004280 3.4e-08 62.0 101 30.7
Duzib170G0318 Durio zibethinus HOM05D001458 ORTHO05D007170 4.4e-08 61.6 109 31.2
Medtr5g095090 Medicago truncatula HOM05D001458 ORTHO05D007170 4.4e-08 61.6 101 29.7
RcHm_v2.0_Chr5g0053841 Rosa chinensis HOM05D001458 ORTHO05D007170 4.4e-08 61.6 109 29.4
MELO3C024924.2 Cucumis melo HOM05D001458 ORTHO05D007170 5.7e-08 61.2 101 30.7
Cfa020207 Carpinus fangiana HOM05D001458 ORTHO05D007170 7.5e-08 60.8 98 28.6
Haze_09810 Corylus avellana HOM05D001458 ORTHO05D007170 7.5e-08 60.8 98 28.6
Migut.M01660 Erythranthe guttata HOM05D001458 ORTHO05D007170 7.5e-08 60.8 101 29.7
MBI16_g22433_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D007170 7.5e-08 60.8 104 30.8
TWI39G0056 Tripterygium wilfordii HOM05D001458 ORTHO05D007170 7.5e-08 60.8 101 27.7
Lj8A178T76 Lonicera japonica HOM05D001458 ORTHO05D007170 1.3e-07 60.1 102 29.4
Psat4g050240 Pisum sativum HOM05D001458 ORTHO05D007170 1.3e-07 60.1 98 29.6
THA.LOC104810290 Tarenaya hassleriana HOM05D001458 ORTHO05D007170 1.3e-07 60.1 98 31.6
Sed0010799 Sechium edule HOM05D001458 ORTHO05D007170 1.7e-07 59.7 101 28.7
CsaV3_7G017270 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.2e-07 59.3 101 29.7
CsaV3_7G017280 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.2e-07 59.3 101 29.7
CsaV3_7G018280 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.2e-07 59.3 101 29.7
CsaV3_UNG200520 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.2e-07 59.3 101 29.7
CsaV3_UNG214460 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.2e-07 59.3 101 29.7
Prupe.4G241800 Prunus persica HOM05D001458 ORTHO05D007170 2.2e-07 59.3 101 27.7
Gohir.A01G090600 Gossypium hirsutum HOM05D001458 ORTHO05D007170 2.8e-07 58.9 93 34.4
TPR.G628 Trifolium pratense HOM05D001458 ORTHO05D006787 2.8e-07 58.9 93 36.6
CAN.G2569.1 Capsicum annuum HOM05D001458 ORTHO05D007170 3.7e-07 58.5 101 28.7
CAN.G337.9 Capsicum annuum HOM05D001458 ORTHO05D007170 3.7e-07 58.5 101 28.7
Sopen07g033650 Solanum pennellii HOM05D001458 ORTHO05D007170 3.7e-07 58.5 101 27.7
TPR.G40031 Trifolium pratense HOM05D001458 ORTHO05D036745 4.8e-07 58.2 65 38.5
Gohir.D01G075900 Gossypium hirsutum HOM05D001458 ORTHO05D007170 8.3e-07 57.4 93 33.3
Gorai.002G099100 Gossypium raimondii HOM05D001458 ORTHO05D007170 8.3e-07 57.4 93 33.3
FvH4_3g29420 Fragaria vesca HOM05D001458 ORTHO05D007170 1.1e-06 57.0 109 28.4
Oeu005966.1 Olea europaea HOM05D001458 ORTHO05D007170 1.1e-06 57.0 111 27.0
RcHm_v2.0_Chr2g0089851 Rosa chinensis HOM05D001458 ORTHO05D020639 1.1e-06 57.0 87 43.7
Aqoxy1G00281 Aquilegia oxysepala HOM05D001458 ORTHO05D006787 1.4e-06 56.6 77 37.7
ECA236G2484 Erigeron canadensis HOM05D003423 ORTHO05D003910 1.4e-06 56.6 101 29.7
Psat2g008560 Pisum sativum HOM05D001458 ORTHO05D007170 1.4e-06 56.6 98 28.6
Potri.001G366700 Populus trichocarpa HOM05D001458 ORTHO05D007170 1.4e-06 56.6 98 28.6
PGR031G1458 Punica granatum HOM05D001458 ORTHO05D007170 1.4e-06 56.6 85 31.8
FAN25G1628 Fragaria x ananassa HOM05D001458 ORTHO05D007170 1.8e-06 56.2 109 28.4
MD11G1201200 Malus domestica HOM05D001458 ORTHO05D007170 1.8e-06 56.2 85 31.8
PGSC0003DMG401022175 Solanum tuberosum HOM05D001458 ORTHO05D007170 1.8e-06 56.2 101 26.7
Manes.15G061000 Manihot esculenta HOM05D001458 ORTHO05D007170 2.4e-06 55.8 97 29.9
FAN16G1179 Fragaria x ananassa HOM05D001458 ORTHO05D007170 3.1e-06 55.5 109 27.5
Nitab4.5_0006886g0030 Nicotiana tabacum HOM05D001458 ORTHO05D007170 3.1e-06 55.5 101 27.7
LjContig00081g0000365 Lotus japonicus HOM05D001458 ORTHO05D007170 4.1e-06 55.1 98 27.6
Glyma.02G299600 Glycine max HOM05D001458 ORTHO05D007170 5.4e-06 54.7 82 29.3
Hma1.2p1_0889F.1_g232825 Hydrangea macrophylla HOM05D001458 ORTHO05D007170 5.4e-06 54.7 85 31.8
Pp3c6_18230 Physcomitrium patens HOM05D001458 ORTHO05D007170 5.4e-06 54.7 97 30.9
unitig_747.g21640 Utricularia gibba HOM05D001458 ORTHO05D007170 7.0e-06 54.3 101 26.7
Nn1g03205 Nelumbo nucifera HOM05D001458 ORTHO05D007170 9.1e-06 53.9 120 26.7


User provided reference genes

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