Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0378701 Rosa chinensis HOM05D002159 ORTHO05D005625 2.8e-202 708.4 352 100.0
FAN01G0872 Fragaria x ananassa HOM05D002159 ORTHO05D005625 6.0e-120 434.9 397 63.2
FAN03G0857 Fragaria x ananassa HOM05D002159 ORTHO05D005625 6.0e-120 434.9 386 64.2
FvH4_7g29660 Fragaria vesca HOM05D002159 ORTHO05D005625 7.8e-120 434.5 398 63.1
FAN06G3579 Fragaria x ananassa HOM05D002159 ORTHO05D005625 7.8e-120 434.5 398 63.1
FAN06G4426 Fragaria x ananassa HOM05D002159 ORTHO05D005625 7.8e-120 434.5 398 63.1
FAN03G1172 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.0e-119 434.1 386 64.2
FAN10G0118 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.1e-118 430.6 398 62.8
Prupe.2G296200 Prunus persica HOM05D002159 ORTHO05D005625 2.1e-109 399.8 398 57.8
MD07G1272900 Malus domestica HOM05D002159 ORTHO05D005625 3.8e-106 389.0 399 56.1
CANSAT21G0489 Cannabis sativa HOM05D002159 ORTHO05D005625 2.7e-104 382.9 399 54.4
RcHm_v2.0_Chr1g0379181 Rosa chinensis HOM05D002159 ORTHO05D005625 1.7e-103 380.2 201 94.5
RcHm_v2.0_Chr1g0379351 Rosa chinensis HOM05D002159 ORTHO05D005625 1.7e-103 380.2 201 94.5
MD01G1203600 Malus domestica HOM05D002159 ORTHO05D005625 3.0e-103 379.4 419 54.2
MELO3C006919.2 Cucumis melo HOM05D002159 ORTHO05D005625 2.6e-99 366.3 385 54.8
CsaV3_3G017220 Cucumis sativus L. HOM05D002159 ORTHO05D005625 4.5e-99 365.5 385 54.8
Actinidia25881 Actinidia chinensis HOM05D002159 ORTHO05D005625 2.2e-98 363.2 385 54.3
THA.LOC104821393 Tarenaya hassleriana HOM05D002159 ORTHO05D005625 2.2e-98 363.2 376 54.3
Gohir.D12G258000 Gossypium hirsutum HOM05D002159 ORTHO05D005625 8.4e-98 361.3 389 53.7
Gorai.008G276300 Gossypium raimondii HOM05D002159 ORTHO05D005625 8.4e-98 361.3 389 53.7
ClCG05G008140 Citrullus lanatus HOM05D002201 ORTHO05D005625 1.1e-97 360.9 408 52.2
Gohir.A12G256700 Gossypium hirsutum HOM05D002159 ORTHO05D005625 1.9e-97 360.1 389 53.5
TWI34G0379 Tripterygium wilfordii HOM05D002159 ORTHO05D005625 1.9e-97 360.1 388 53.9
Cpa.g.c26789.4 Carica papaya HOM05D002159 ORTHO05D005625 2.4e-97 359.8 379 54.4
Ca_14555_v3 Cicer arietinum L. HOM05D002159 ORTHO05D005625 4.2e-97 359.0 387 53.7
HanXRQChr14g0462121 Helianthus annuus HOM05D002159 ORTHO05D005625 9.3e-97 357.8 383 53.8
Sed0009742 Sechium edule HOM05D002159 ORTHO05D005625 9.3e-97 357.8 385 54.0
TPR.G8152 Trifolium pratense HOM05D002159 ORTHO05D005625 1.2e-96 357.5 387 53.0
Duzib205G0713 Durio zibethinus HOM05D002159 ORTHO05D005625 1.6e-96 357.1 387 54.3
Thecc.03G179100 Theobroma cacao HOM05D002159 ORTHO05D005625 2.1e-96 356.7 389 54.0
Manes.01G126800 Manihot esculenta HOM05D002159 ORTHO05D005625 2.7e-96 356.3 389 53.5
Medtr1g050492 Medicago truncatula HOM05D002159 ORTHO05D005625 4.6e-96 355.5 387 52.7
Phvul.004G114000 Phaseolus vulgaris HOM05D002159 ORTHO05D005625 4.6e-96 355.5 386 53.1
Lj2g0019958 Lotus japonicus HOM05D002159 ORTHO05D005625 1.0e-95 354.4 387 52.5
Ciclev10004414m.g Citrus clementina HOM05D002159 ORTHO05D005625 1.3e-95 354.0 379 54.4
Cfa023191 Carpinus fangiana HOM05D002159 ORTHO05D005625 1.8e-95 353.6 387 53.5
Haze_13669 Corylus avellana HOM05D002159 ORTHO05D005625 1.8e-95 353.6 387 53.2
CiPaw.03G108100 Carya illinoinensis HOM05D002159 ORTHO05D005625 3.0e-95 352.8 387 53.2
ECA238G4262 Erigeron canadensis HOM05D002159 ORTHO05D005625 3.0e-95 352.8 394 52.5
CSS0008751 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 3.9e-95 352.4 387 52.7
CSS0044503 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 3.9e-95 352.4 387 52.7
Glyma.16G182300 Glycine max HOM05D002159 ORTHO05D005625 3.9e-95 352.4 388 53.9
QL09p013785 Quercus lobata HOM05D002159 ORTHO05D005625 3.9e-95 352.4 400 52.0
Glyma.09G136900 Glycine max HOM05D002159 ORTHO05D005625 5.1e-95 352.1 386 53.1
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 6.7e-95 351.7 384 53.1
Atru.chr1.430 Acer truncatum HOM05D002159 ORTHO05D005625 8.7e-95 351.3 378 53.2
GSVIVG01028919001 Vitis vinifera HOM05D002159 ORTHO05D005625 8.7e-95 351.3 374 53.7
Lsat_1_v5_gn_2_132660 Lactuca sativa HOM05D002159 ORTHO05D005625 3.3e-94 349.4 382 52.1
Psat0s1874g0200 Pisum sativum HOM05D002159 ORTHO05D005625 4.3e-94 349.0 387 52.2
Rhsim03G0187300 Rhododendron simsii HOM05D002159 ORTHO05D005625 5.6e-94 348.6 374 55.1
TAR629G0581 Trochodendron aralioides HOM05D002159 ORTHO05D005625 7.4e-94 348.2 373 53.4
DCAR_026334 Daucus carota HOM05D002159 ORTHO05D005625 9.6e-94 347.8 387 51.7
Nn1g01521 Nelumbo nucifera HOM05D002159 ORTHO05D005625 9.6e-94 347.8 386 52.1
Lj8C239G4 Lonicera japonica HOM05D002159 ORTHO05D005625 1.6e-93 347.1 387 53.0
Lalb_Chr03g0034671 Lupinus albus HOM05D002159 ORTHO05D005625 1.6e-93 347.1 387 52.7
vmacro06665 Vaccinium macrocarpon HOM05D002159 ORTHO05D005625 1.6e-93 347.1 374 54.5
COL.COLO4_28056 Corchorus olitorius HOM05D002159 ORTHO05D005625 3.7e-93 345.9 389 52.2
Potri.001G231800 Populus trichocarpa HOM05D002159 ORTHO05D005625 6.2e-93 345.1 387 51.4
PSO478G3748 Papaver somniferum HOM05D002159 ORTHO05D005625 8.1e-93 344.7 387 50.9
Hma1.2p1_1604F.1_g293320 Hydrangea macrophylla HOM05D002159 ORTHO05D005625 1.1e-92 344.4 372 53.2
PSO782G0249 Papaver somniferum HOM05D002159 ORTHO05D005625 1.4e-92 344.0 387 50.9
Sabra16G0139100 Salix brachista HOM05D002159 ORTHO05D005625 1.8e-92 343.6 387 51.4
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 3.1e-92 342.8 386 53.6
Sc13g0008820 Simmondsia chinensis HOM05D002159 ORTHO05D005625 6.9e-92 341.7 397 50.9
Solyc03g025540.3 Solanum lycopersicum HOM05D002159 ORTHO05D005625 1.2e-91 340.9 387 50.6
Sopen03g004380 Solanum pennellii HOM05D002159 ORTHO05D005625 1.2e-91 340.9 387 50.6
BcaNung05469 Brassica carinata HOM05D002159 ORTHO05D005625 2.6e-91 339.7 375 51.7
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 4.5e-91 339.0 387 50.6
Migut.F01111 Erythranthe guttata HOM05D002159 ORTHO05D005625 4.5e-91 339.0 388 51.0
AUR62021167 Chenopodium quinoa HOM05D002159 ORTHO05D005625 7.6e-91 338.2 387 51.4
AUR62015961 Chenopodium quinoa HOM05D002159 ORTHO05D005625 1.7e-90 337.0 387 51.4
Hund04761 Selenicereus undatus HOM05D002159 ORTHO05D005625 6.5e-90 335.1 383 49.1
Aa31LG11G3180 Aethionema arabicum HOM05D002159 ORTHO05D005625 1.4e-89 334.0 394 50.5
EL10Ac3g05612 Beta vulgaris HOM05D002159 ORTHO05D005625 1.9e-89 333.6 385 49.6
AL6G35190 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 2.5e-89 333.2 377 51.5
A06p34690 Brassica napus HOM05D002159 ORTHO05D005625 7.1e-89 331.6 385 50.1
AT5G23880 Arabidopsis thaliana HOM05D002159 ORTHO05D005625 9.3e-89 331.3 377 51.2
C07p43800 Brassica napus HOM05D002159 ORTHO05D005625 9.3e-89 331.3 385 50.1
BolC7t44909H Brassica oleracea HOM05D002159 ORTHO05D005625 9.3e-89 331.3 385 50.1
BcaNung01838 Brassica carinata HOM05D002159 ORTHO05D005625 1.2e-88 330.9 385 50.1
BraA06t26396Z Brassica rapa HOM05D002159 ORTHO05D005625 1.2e-88 330.9 385 50.1
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.2e-88 330.9 387 49.6
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 1.2e-88 330.9 377 50.9
Peaxi162Scf00444g00532 Petunia axillaris HOM05D002159 ORTHO05D005625 1.6e-88 330.5 404 49.3
Carub.0006s2160 Capsella rubella HOM05D002159 ORTHO05D005625 2.7e-88 329.7 377 50.9
CARHR189680 Cardamine hirsuta HOM05D002159 ORTHO05D005625 1.3e-87 327.4 377 50.7
SGA_v2.0_scaffold10G05332 Striga asiatica HOM05D002159 ORTHO05D005625 1.8e-87 327.0 388 50.0
Thhalv10003707m.g Eutrema salsugineum HOM05D002159 ORTHO05D005625 2.3e-87 326.6 377 50.7
HPP92_025733 Vanilla planifolia HOM05D002159 ORTHO05D005625 2.3e-87 326.6 382 50.0
HPP92_025730 Vanilla planifolia HOM05D002159 ORTHO05D005625 1.1e-86 324.3 382 49.7
Nitab4.5_0004439g0160 Nicotiana tabacum HOM05D002159 ORTHO05D005625 4.3e-86 322.4 404 47.8
Duzib084G0847 Durio zibethinus HOM05D002159 ORTHO05D005625 1.6e-85 320.5 312 58.3
SalBow2G1087 Salvia bowleyana HOM05D002159 ORTHO05D005625 1.6e-85 320.5 375 51.2
Aqoxy7G00327 Aquilegia oxysepala HOM05D002159 ORTHO05D005625 8.2e-85 318.2 385 49.9
Zm00001eb162800 Zea mays HOM05D002159 ORTHO05D005625 1.5e-83 313.9 386 48.2
ATR0680G292 Amborella trichopoda HOM05D002159 ORTHO05D005625 5.9e-83 312.0 390 47.4
VMungo0464G2116 Vigna mungo HOM05D002159 ORTHO05D005625 7.6e-83 311.6 311 56.6
CDE06G0059 Ceratophyllum demersum HOM05D002159 ORTHO05D005625 3.8e-82 309.3 395 48.4
Os09g0569400 Oryza sativa ssp. japonica HOM05D002159 ORTHO05D005625 2.7e-80 303.1 387 47.3
Cc02_g02790 Coffea canephora HOM05D002159 ORTHO05D005625 7.4e-78 295.0 304 54.3
AL6G35160 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 1.1e-73 281.2 354 48.6
unitig_26.g10199 Utricularia gibba HOM05D002159 ORTHO05D005625 1.8e-71 273.9 373 45.0
Dinv28421 Davidia involucrata HOM05D002159 ORTHO05D005625 2.5e-70 270.0 388 43.8
Actinidia02884 Actinidia chinensis HOM05D002159 ORTHO05D005625 4.1e-68 262.7 206 66.0
Mapoly0007s0176 Marchantia polymorpha HOM05D002159 ORTHO05D005625 2.6e-67 260.0 391 42.5
Ah.13g068620 Amaranthus hybridus HOM05D002159 ORTHO05D005625 1.4e-63 247.7 280 50.4
PSO423G0230 Papaver somniferum HOM05D002159 ORTHO05D005625 3.3e-62 243.0 360 43.9
Pp3c9_11100 Physcomitrium patens HOM05D002159 ORTHO05D005625 4.4e-62 242.7 395 39.7
RcHm_v2.0_Chr1g0377681 Rosa chinensis HOM05D002159 ORTHO05D005625 8.2e-61 238.4 241 59.8
HPP92_025761 Vanilla planifolia HOM05D002159 ORTHO05D005625 5.3e-60 235.7 354 43.8
SMO111G0062 Selaginella moellendorffii HOM05D002159 ORTHO05D005625 1.3e-58 231.1 383 38.4
Lj1A1000T74 Lonicera japonica HOM05D002159 ORTHO05D005625 3.6e-56 223.0 346 43.1
AagrBONN_evm.TU.Sc2ySwM_117.3689 Anthoceros agrestis HOM05D002159 ORTHO05D005625 8.8e-55 218.4 396 37.6
CBR_g4749 Chara braunii HOM05D002159 ORTHO05D005625 1.3e-50 204.5 392 37.0
arahy.Tifrunner.gnm1.ann1.F9YRCX Arachis hypogaea HOM05D002159 ORTHO05D005625 4.7e-48 196.1 377 37.7
RcHm_v2.0_Chr1g0379171 Rosa chinensis HOM05D002159 ORTHO05D005625 9.8e-46 188.3 92 97.8
RcHm_v2.0_Chr1g0379341 Rosa chinensis HOM05D002159 ORTHO05D005625 9.8e-46 188.3 92 97.8
RcHm_v2.0_Chr1g0377671 Rosa chinensis HOM05D002159 ORTHO05D005625 1.0e-39 168.3 133 68.4
FAN06G2653 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.2e-35 154.8 296 40.9
Glyma.11G171001 Glycine max HOM05D002159 ORTHO05D005625 3.4e-30 136.7 123 61.0
arahy.Tifrunner.gnm1.ann1.JGS186 Arachis hypogaea HOM05D002159 ORTHO05D005625 4.9e-29 132.9 133 54.9
Glyma.11G170602 Glycine max HOM05D002159 ORTHO05D005625 3.2e-28 130.2 133 54.9
BcaNung05470 Brassica carinata HOM05D002159 ORTHO05D005625 5.4e-28 129.4 89 66.3
FvH4_7g30022 Fragaria vesca HOM05D002159 ORTHO05D005625 3.5e-27 126.7 70 90.0
Haze_26919 Corylus avellana HOM05D002159 ORTHO05D005625 4.3e-25 119.8 401 25.4
MCO01G234 Micromonas commoda HOM05D002159 ORTHO05D005625 3.6e-24 116.7 215 36.7
MCO01G235 Micromonas commoda HOM05D002159 ORTHO05D005625 3.6e-24 116.7 215 36.7
Glyma.11G171003 Glycine max HOM05D002159 ORTHO05D005625 1.0e-23 115.2 174 44.3
SHI10393 Sapria himalayana HOM05D002159 ORTHO05D005625 4.4e-22 109.8 143 46.2
Psat0s2150g0160 Pisum sativum HOM05D002159 ORTHO05D005625 3.7e-21 106.7 115 53.0
SHI10394 Sapria himalayana HOM05D002159 ORTHO05D005625 2.5e-17 94.0 69 66.7
PRCOL_00000390 Prasinoderma coloniale HOM05D002159 ORTHO05D005625 1.4e-15 88.2 124 38.7
Actinidia34126 Actinidia chinensis HOM05D002159 ORTHO05D005625 1.7e-13 81.3 54 70.4
Oeu028430.1 Olea europaea HOM05D002159 ORTHO05D005625 6.4e-13 79.3 50 78.0
Dinv20943 Davidia involucrata HOM05D002159 ORTHO05D045108 5.4e-12 76.3 50 70.0
Dinv21001 Davidia involucrata HOM05D002159 ORTHO05D045108 5.4e-12 76.3 50 70.0
Glyma.11G170601 Glycine max HOM05D002159 ORTHO05D005625 2.1e-11 74.3 59 61.0
Cre12.g487600 Chlamydomonas reinhardtii HOM05D002159 ORTHO05D005625 1.0e-10 72.0 188 28.7
VMungo0464G0478 Vigna mungo HOM05D002159 ORTHO05D005625 5.6e-09 66.2 51 62.7
MBI17_g39903_MAGBIO Magnolia biondii HOM05D002159 ORTHO05D005625 2.8e-08 63.9 52 57.7
SEGI_24581 Sequoiadendron giganteum HOM05D002159 ORTHO05D005625 2.8e-08 63.9 65 47.7
BcaB01g03611 Brassica carinata HOM05D002159 ORTHO05D024008 1.4e-07 61.6 70 48.6
MCO04G421 Micromonas commoda HOM05D002001 ORTHO05D004100 1.4e-07 61.6 182 28.0
Cc02_g02800 Coffea canephora HOM05D002159 ORTHO05D005625 2.3e-07 60.8 50 58.0
FAN06G3485 Fragaria x ananassa HOM05D002159 ORTHO05D017878 3.1e-07 60.5 36 80.6
Nitab4.5_0006377g0020 Nicotiana tabacum HOM05D002159 ORTHO05D005625 3.1e-07 60.5 39 69.2
Gohir.A04G142900 Gossypium hirsutum HOM05D002001 ORTHO05D006833 4.0e-07 60.1 180 28.9
Gohir.D04G186200 Gossypium hirsutum HOM05D002001 ORTHO05D006833 4.0e-07 60.1 180 28.9
Gorai.012G182600 Gossypium raimondii HOM05D002001 ORTHO05D006833 4.0e-07 60.1 180 28.9
VMungo0720G0546 Vigna mungo HOM05D002001 ORTHO05D006833 4.0e-07 60.1 191 27.7
Haze_26930 Corylus avellana HOM05D002001 ORTHO05D004100 6.8e-07 59.3 183 23.5
Thecc.02G293000 Theobroma cacao HOM05D002001 ORTHO05D006833 6.8e-07 59.3 180 28.3
unitig_22.g6110 Utricularia gibba HOM05D002001 ORTHO05D004100 6.8e-07 59.3 132 28.8
Nn4g24394 Nelumbo nucifera HOM05D002001 ORTHO05D006833 8.9e-07 58.9 120 32.5
RcHm_v2.0_Chr3g0480131 Rosa chinensis HOM05D002001 ORTHO05D006833 8.9e-07 58.9 120 32.5
RcHm_v2.0_Chr4g0443031 Rosa chinensis HOM05D002001 ORTHO05D006833 8.9e-07 58.9 120 32.5
TAR374G1090 Trochodendron aralioides HOM05D002001 ORTHO05D006833 8.9e-07 58.9 188 29.3
FvH4_7g30021 Fragaria vesca HOM05D002159 ORTHO05D017878 1.2e-06 58.5 36 77.8
Phvul.003G018200 Phaseolus vulgaris HOM05D002001 ORTHO05D006833 1.2e-06 58.5 187 28.9
Migut.F01878 Erythranthe guttata HOM05D002001 ORTHO05D006833 1.5e-06 58.2 122 35.2
PSO017G4060 Papaver somniferum HOM05D002001 ORTHO05D006833 1.5e-06 58.2 120 33.3
Actinidia34125 Actinidia chinensis HOM05D002159 ORTHO05D005625 2.0e-06 57.8 50 56.0
Cfa024982 Carpinus fangiana HOM05D002159 ORTHO05D124127 2.0e-06 57.8 109 33.0
Duzib251G0919 Durio zibethinus HOM05D002001 ORTHO05D006833 2.0e-06 57.8 180 28.3
Medtr1g032500 Medicago truncatula HOM05D002001 ORTHO05D006833 2.0e-06 57.8 188 30.3
Rhsim09G0089400 Rhododendron simsii HOM05D002001 ORTHO05D006833 2.0e-06 57.8 191 28.3
CAN.G74.9 Capsicum annuum HOM05D002001 ORTHO05D006833 2.6e-06 57.4 184 28.3
CiPaw.06G052200 Carya illinoinensis HOM05D002001 ORTHO05D006833 3.4e-06 57.0 120 30.8
MELO3C021825.2 Cucumis melo HOM05D002001 ORTHO05D006833 4.4e-06 56.6 180 28.9
CsaV3_2G036200 Cucumis sativus L. HOM05D002001 ORTHO05D006833 4.4e-06 56.6 180 28.9
Solyc04g008030.2 Solanum lycopersicum HOM05D002001 ORTHO05D006833 5.8e-06 56.2 187 28.3
Sopen04g003170 Solanum pennellii HOM05D002001 ORTHO05D006833 5.8e-06 56.2 187 28.3
MBI19_g08381_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D006833 7.6e-06 55.8 188 28.7
Peaxi162Scf00337g00816 Petunia axillaris HOM05D002001 ORTHO05D006833 7.6e-06 55.8 127 32.3
Haze_10877 Corylus avellana HOM05D002001 ORTHO05D006833 9.9e-06 55.5 180 26.1
Glyma.02G085400 Glycine max HOM05D002001 ORTHO05D006833 9.9e-06 55.5 191 28.3
Sabra10G0077600 Salix brachista HOM05D002001 ORTHO05D006833 9.9e-06 55.5 182 28.0


User provided reference genes

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