Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p004182 Quercus lobata HOM05D001045 ORTHO05D004836 0.0e+00 1079.7 543 100.0
QL10p004119 Quercus lobata HOM05D001045 ORTHO05D004836 4.2e-197 691.8 347 99.7
Haze_07234 Corylus avellana HOM05D001045 ORTHO05D004836 5.5e-173 611.7 347 89.0
CiPaw.12G041700 Carya illinoinensis HOM05D001045 ORTHO05D004836 1.4e-171 607.1 347 89.0
Cfa018840 Carpinus fangiana HOM05D001045 ORTHO05D004836 4.4e-170 602.1 347 87.9
GSVIVG01008515001 Vitis vinifera HOM05D001045 ORTHO05D004836 7.5e-162 574.7 327 87.2
Thecc.03G126800 Theobroma cacao HOM05D001045 ORTHO05D004836 6.3e-161 571.6 339 82.6
TAR629G1776 Trochodendron aralioides HOM05D001045 ORTHO05D004836 6.3e-161 571.6 327 87.5
Sed0018235 Sechium edule HOM05D001045 ORTHO05D004836 1.4e-160 570.5 342 84.2
Actinidia15837 Actinidia chinensis HOM05D001045 ORTHO05D004836 7.0e-160 568.2 327 85.9
Ciclev10018763m.g Citrus clementina HOM05D001045 ORTHO05D004836 1.2e-159 567.4 327 85.0
Dinv11158 Davidia involucrata HOM05D001045 ORTHO05D004836 3.5e-159 565.8 327 87.2
Duzib205G1644 Durio zibethinus HOM05D001045 ORTHO05D004836 4.5e-159 565.5 339 82.3
CsaV3_1G000660 Cucumis sativus L. HOM05D001045 ORTHO05D004836 1.3e-158 563.9 329 85.4
Potri.012G095800 Populus trichocarpa HOM05D001045 ORTHO05D004836 6.5e-158 561.6 356 79.8
Prupe.5G152800 Prunus persica HOM05D001045 ORTHO05D004836 6.5e-158 561.6 328 85.4
Actinidia25588 Actinidia chinensis HOM05D001045 ORTHO05D004836 1.1e-157 560.8 327 85.6
Gorai.003G119600 Gossypium raimondii HOM05D001045 ORTHO05D004836 1.5e-157 560.5 327 84.4
MD14G1158900 Malus domestica HOM05D001045 ORTHO05D004836 2.5e-157 559.7 332 84.3
PGR083G0639 Punica granatum HOM05D001045 ORTHO05D004836 2.5e-157 559.7 342 81.0
CANSAT80G0692 Cannabis sativa HOM05D001045 ORTHO05D004836 5.5e-157 558.5 392 73.5
Sabra12G0070200 Salix brachista HOM05D001045 ORTHO05D004836 7.2e-157 558.1 357 79.3
COL.COLO4_28086 Corchorus olitorius HOM05D001045 ORTHO05D004836 1.2e-156 557.4 327 83.2
Gohir.A07G051700 Gossypium hirsutum HOM05D001045 ORTHO05D004836 3.6e-156 555.8 327 84.1
Nn3g16511 Nelumbo nucifera HOM05D001045 ORTHO05D004836 4.7e-156 555.4 327 84.4
Phvul.003G209600 Phaseolus vulgaris HOM05D001045 ORTHO05D004836 6.1e-156 555.1 328 82.9
THA.LOC104798948 Tarenaya hassleriana HOM05D001045 ORTHO05D004836 8.0e-156 554.7 357 79.0
VMungo1215G2889 Vigna mungo HOM05D001045 ORTHO05D004836 8.0e-156 554.7 328 84.1
Atru.chr9.1079 Acer truncatum HOM05D001045 ORTHO05D004836 2.3e-155 553.1 327 83.8
arahy.Tifrunner.gnm1.ann1.XN7UED Arachis hypogaea HOM05D001045 ORTHO05D004836 2.3e-155 553.1 320 85.3
Lalb_Chr23g0273561 Lupinus albus HOM05D001045 ORTHO05D004836 2.3e-155 553.1 328 83.8
Gohir.A03G053500 Gossypium hirsutum HOM05D001045 ORTHO05D004836 3.0e-155 552.7 327 82.9
MD06G1143600 Malus domestica HOM05D001045 ORTHO05D004836 3.0e-155 552.7 328 84.5
Sc04g0000750 Simmondsia chinensis HOM05D001045 ORTHO05D004836 4.0e-155 552.4 335 81.8
FAN04G1508 Fragaria x ananassa HOM05D001045 ORTHO05D004836 5.2e-155 552.0 329 82.4
Glyma.04G194600 Glycine max HOM05D001045 ORTHO05D004836 5.2e-155 552.0 328 84.1
Gorai.001G059600 Gossypium raimondii HOM05D001045 ORTHO05D004836 5.2e-155 552.0 327 83.8
Potri.015G093600 Populus trichocarpa HOM05D001045 ORTHO05D004836 6.8e-155 551.6 329 83.3
AUR62025919 Chenopodium quinoa HOM05D001045 ORTHO05D004836 1.2e-154 550.8 327 81.7
Glyma.06G171400 Glycine max HOM05D001045 ORTHO05D004836 1.2e-154 550.8 329 83.6
Peaxi162Scf00089g00522 Petunia axillaris HOM05D001045 ORTHO05D004836 3.4e-154 549.3 327 83.5
PGSC0003DMG402015244 Solanum tuberosum HOM05D001045 ORTHO05D004836 4.4e-154 548.9 326 83.7
Glyma.17G128500 Glycine max HOM05D001045 ORTHO05D004836 5.7e-154 548.5 350 79.4
Solyc03g111260.3 Solanum lycopersicum HOM05D001045 ORTHO05D004836 5.7e-154 548.5 326 83.7
Sopen03g030390 Solanum pennellii HOM05D001045 ORTHO05D004836 5.7e-154 548.5 326 83.7
RcHm_v2.0_Chr7g0190431 Rosa chinensis HOM05D001045 ORTHO05D004836 7.5e-154 548.1 329 83.3
FvH4_5g07980 Fragaria vesca HOM05D001045 ORTHO05D004836 2.2e-153 546.6 329 82.7
FAN18G4157 Fragaria x ananassa HOM05D001045 ORTHO05D004836 2.2e-153 546.6 329 82.7
Rhsim08G0188700 Rhododendron simsii HOM05D001045 ORTHO05D004836 2.2e-153 546.6 336 81.8
FAN08G1251 Fragaria x ananassa HOM05D001045 ORTHO05D004836 3.7e-153 545.8 328 82.0
Psat5g139840 Pisum sativum HOM05D001045 ORTHO05D004836 3.7e-153 545.8 327 81.7
Manes.14G052700 Manihot esculenta HOM05D001045 ORTHO05D004836 1.8e-152 543.5 349 79.7
Sabra15G0115200 Salix brachista HOM05D001045 ORTHO05D004836 1.8e-152 543.5 355 78.0
MSTRG.22907 Avicennia marina HOM05D001045 ORTHO05D004836 4.1e-152 542.3 327 82.3
Migut.I00512 Erythranthe guttata HOM05D001045 ORTHO05D004836 4.1e-152 542.3 328 80.5
Lalb_Chr11g0069641 Lupinus albus HOM05D001045 ORTHO05D004836 4.1e-152 542.3 328 82.0
TWI14G1089 Tripterygium wilfordii HOM05D001045 ORTHO05D004836 4.1e-152 542.3 361 76.5
CAN.G352.26 Capsicum annuum HOM05D001045 ORTHO05D004836 9.1e-152 541.2 329 82.7
CSS0020803 Camellia sinensis var. sinensis HOM05D001045 ORTHO05D004836 1.2e-151 540.8 328 82.0
Nitab4.5_0003680g0020 Nicotiana tabacum HOM05D001045 ORTHO05D004836 1.2e-151 540.8 327 81.3
Nitab4.5_0003005g0050 Nicotiana tabacum HOM05D001045 ORTHO05D004836 1.6e-151 540.4 327 81.0
Cc03_g13140 Coffea canephora HOM05D001045 ORTHO05D004836 3.5e-151 539.3 334 82.0
arahy.Tifrunner.gnm1.ann1.3PZ9PI Arachis hypogaea HOM05D001045 ORTHO05D004836 4.5e-151 538.9 326 82.5
Lj1g0009758 Lotus japonicus HOM05D001045 ORTHO05D004836 5.9e-151 538.5 327 82.3
Medtr3g089020 Medicago truncatula HOM05D001045 ORTHO05D004836 1.3e-150 537.3 327 81.3
arahy.Tifrunner.gnm1.ann1.3BP915 Arachis hypogaea HOM05D001045 ORTHO05D004836 1.7e-150 537.0 326 82.2
DCAR_016404 Daucus carota HOM05D001045 ORTHO05D004836 1.7e-150 537.0 327 82.0
arahy.Tifrunner.gnm1.ann1.B3AG7P Arachis hypogaea HOM05D001045 ORTHO05D004836 2.3e-150 536.6 360 76.7
EL10As4g23417 Beta vulgaris HOM05D001045 ORTHO05D004836 2.9e-150 536.2 356 76.1
AL8G40490 Arabidopsis lyrata HOM05D001045 ORTHO05D004836 3.8e-150 535.8 356 76.1
AT5G63420 Arabidopsis thaliana HOM05D001045 ORTHO05D004836 5.0e-150 535.4 357 75.1
Sp2g26510 Schrenkiella parvula HOM05D001045 ORTHO05D004836 1.9e-149 533.5 328 79.9
Hund02428 Selenicereus undatus HOM05D001045 ORTHO05D004836 1.9e-149 533.5 328 78.7
MBI16_g26173_MAGBIO Magnolia biondii HOM05D001045 ORTHO05D004836 3.3e-149 532.7 347 78.4
Ca_24509_v3 Cicer arietinum L. HOM05D001045 ORTHO05D004836 4.2e-149 532.3 314 82.5
BcaC01g02587 Brassica carinata HOM05D001045 ORTHO05D004836 7.2e-149 531.6 340 77.6
C03p63160 Brassica napus HOM05D001045 ORTHO05D004836 7.2e-149 531.6 329 79.9
Peaxi162Scf00536g00312 Petunia axillaris HOM05D001045 ORTHO05D004836 1.2e-148 530.8 327 82.0
DCAR_026220 Daucus carota HOM05D001045 ORTHO05D004836 2.1e-148 530.0 382 72.8
Psat4g062560 Pisum sativum HOM05D001045 ORTHO05D004836 2.1e-148 530.0 310 84.2
BolC3t18571H Brassica oleracea HOM05D001045 ORTHO05D004836 2.8e-148 529.6 340 77.4
A06p30050 Brassica napus HOM05D001045 ORTHO05D004836 8.0e-148 528.1 332 79.2
BraA06t25957Z Brassica rapa HOM05D001045 ORTHO05D004836 8.0e-148 528.1 332 79.2
Thhalv10003624m.g Eutrema salsugineum HOM05D001045 ORTHO05D004836 8.0e-148 528.1 335 78.5
Medtr4g103770 Medicago truncatula HOM05D001045 ORTHO05D004836 8.0e-148 528.1 308 83.8
ATR0680G066 Amborella trichopoda HOM05D001045 ORTHO05D004836 1.4e-147 527.3 330 77.9
Aqoxy3G01499 Aquilegia oxysepala HOM05D001045 ORTHO05D004836 1.4e-147 527.3 327 82.0
MBI11_g06773_MAGBIO Magnolia biondii HOM05D001045 ORTHO05D004836 4.0e-147 525.8 291 88.3
Aa31LG1G18610 Aethionema arabicum HOM05D001045 ORTHO05D004836 5.2e-147 525.4 380 70.8
CARHR277280 Cardamine hirsuta HOM05D001045 ORTHO05D004836 5.2e-147 525.4 340 77.1
Eucgr.B00129 Eucalyptus grandis HOM05D001045 ORTHO05D004836 5.2e-147 525.4 292 86.3
ECA240G2390 Erigeron canadensis HOM05D001045 ORTHO05D004836 6.8e-147 525.0 327 80.7
Carub.0008s2413 Capsella rubella HOM05D001045 ORTHO05D004836 8.9e-147 524.6 357 75.6
Lsat_1_v5_gn_1_81241 Lactuca sativa HOM05D001045 ORTHO05D004836 1.2e-146 524.2 327 78.9
ClCG06G017790 Citrullus lanatus HOM05D001045 ORTHO05D004836 3.4e-146 522.7 339 79.6
CDE04G0888 Ceratophyllum demersum HOM05D001045 ORTHO05D004836 1.7e-145 520.4 336 76.2
Cpa.g.sc13.140 Carica papaya HOM05D001045 ORTHO05D004836 1.4e-144 517.3 269 92.2
Ca_00917_v3 Cicer arietinum L. HOM05D001045 ORTHO05D004836 1.4e-144 517.3 332 79.5
HanXRQChr03g0064991 Helianthus annuus HOM05D001045 ORTHO05D004836 1.8e-144 516.9 327 78.6
SGA_v2.0_scaffold215G42334 Striga asiatica HOM05D001045 ORTHO05D004836 9.2e-144 514.6 338 76.9
vmacro16670 Vaccinium macrocarpon HOM05D001045 ORTHO05D004836 2.0e-143 513.5 303 81.8
Oeu006361.1 Olea europaea HOM05D001045 ORTHO05D004836 4.6e-143 512.3 344 77.6
PSO478G0896 Papaver somniferum HOM05D001045 ORTHO05D004836 4.6e-143 512.3 328 79.6
PSO017G5689 Papaver somniferum HOM05D001045 ORTHO05D004836 7.8e-143 511.5 328 79.3
Lj9C477G11 Lonicera japonica HOM05D001045 ORTHO05D004836 1.0e-142 511.1 269 91.4
Os02g0539600 Oryza sativa ssp. japonica HOM05D001045 ORTHO05D004836 1.0e-142 511.1 293 83.6
Zm00001eb234620 Zea mays HOM05D001045 ORTHO05D004836 1.5e-141 507.3 334 76.0
HPP92_008938 Vanilla planifolia HOM05D001045 ORTHO05D004836 4.7e-140 502.3 361 71.5
MELO3C026230.2 Cucumis melo HOM05D001045 ORTHO05D004836 8.0e-140 501.5 353 74.5
Gohir.D07G056200 Gossypium hirsutum HOM05D001045 ORTHO05D004836 1.0e-139 501.1 269 88.8
CDE07G0382 Ceratophyllum demersum HOM05D001045 ORTHO05D004836 7.5e-138 495.0 304 78.9
Actinidia36799 Actinidia chinensis HOM05D001045 ORTHO05D004836 5.4e-136 488.8 259 90.3
Ah.11g045420 Amaranthus hybridus HOM05D001045 ORTHO05D004836 1.0e-134 484.6 327 75.5
AUR62029637 Chenopodium quinoa HOM05D001045 ORTHO05D004836 1.2e-130 471.1 289 80.3
vmacro19213 Vaccinium macrocarpon HOM05D001045 ORTHO05D004836 2.6e-130 469.9 393 64.9
arahy.Tifrunner.gnm1.ann1.VYC4MA Arachis hypogaea HOM05D001045 ORTHO05D004836 8.3e-129 464.9 284 80.6
Pp3c20_9790 Physcomitrium patens HOM05D001045 ORTHO05D004836 9.5e-125 451.4 285 75.4
Mapoly0037s0113 Marchantia polymorpha HOM05D001045 ORTHO05D004836 2.0e-122 443.7 288 71.9
AagrBONN_evm.TU.Sc2ySwM_369.157 Anthoceros agrestis HOM05D001045 ORTHO05D004836 2.9e-121 439.9 308 68.2
SMO141G0105 Selaginella moellendorffii HOM05D001045 ORTHO05D004836 7.3e-117 425.2 282 70.9
unitig_27.g25101 Utricularia gibba HOM05D001045 ORTHO05D004836 2.6e-114 416.8 327 69.7
Dinv04873 Davidia involucrata HOM05D001045 ORTHO05D004836 3.2e-112 409.8 217 92.2
TAR371G0766 Trochodendron aralioides HOM05D001045 ORTHO05D004836 3.3e-109 399.8 217 89.4
QL04p026882 Quercus lobata HOM05D001045 ORTHO05D004836 1.2e-98 364.8 241 79.7
Cre16.g683050 Chlamydomonas reinhardtii HOM05D001045 ORTHO05D004836 1.7e-97 360.9 254 66.1
MCO10G193 Micromonas commoda HOM05D001045 ORTHO05D004836 3.8e-97 359.8 254 64.6
PRCOL_00002539 Prasinoderma coloniale HOM05D001045 ORTHO05D004836 6.9e-91 339.0 309 54.0
Actinidia08863 Actinidia chinensis HOM05D001045 ORTHO05D004836 2.2e-81 307.4 172 88.4
Gohir.D03G113500 Gossypium hirsutum HOM05D001045 ORTHO05D004836 1.1e-80 305.1 172 86.6
CBR_g16830 Chara braunii HOM05D001045 ORTHO05D004836 3.2e-80 303.5 299 51.8
QL08p007360 Quercus lobata HOM05D001939 ORTHO05D002051 4.2e-80 303.1 225 68.9
Zm00001eb206430 Zea mays HOM05D001045 ORTHO05D004836 1.1e-77 295.0 172 84.3
TPR.G26154 Trifolium pratense HOM05D001045 ORTHO05D004836 2.0e-74 284.3 155 89.7
QL05p062236 Quercus lobata HOM05D001045 ORTHO05D004836 2.4e-67 260.8 123 99.2
QL10p053830 Quercus lobata HOM05D001045 ORTHO05D004836 7.7e-66 255.8 125 96.0
QL09p032423 Quercus lobata HOM05D001045 ORTHO05D004836 1.0e-65 255.4 123 97.6
Phvul.009G167400 Phaseolus vulgaris HOM05D001045 ORTHO05D004836 3.8e-65 253.4 138 89.9
VMungo1309G1845 Vigna mungo HOM05D001045 ORTHO05D004836 3.8e-65 253.4 138 89.9
SEGI_01988 Sequoiadendron giganteum HOM05D001045 ORTHO05D004836 1.0e-62 245.4 152 73.0
VMungo1309G1120 Vigna mungo HOM05D001045 ORTHO05D004836 1.1e-59 235.3 167 71.3
TPR.G27530 Trifolium pratense HOM05D001045 ORTHO05D004836 4.5e-58 229.9 161 72.0
SEGI_07350 Sequoiadendron giganteum HOM05D001045 ORTHO05D004836 5.5e-48 196.4 105 80.0
Pp3s42_180 Physcomitrium patens HOM05D001045 ORTHO05D044363 1.7e-44 184.9 248 37.9
Hma1.2p1_0014F.1_g009640 Hydrangea macrophylla HOM05D001045 ORTHO05D004836 2.7e-26 124.4 63 92.1
Dinv04872 Davidia involucrata HOM05D001045 ORTHO05D004836 1.0e-22 112.5 88 67.0
FAN11G2378 Fragaria x ananassa HOM05D001045 ORTHO05D029595 2.0e-18 98.2 176 41.5
FvH4_3g39050 Fragaria vesca HOM05D001045 ORTHO05D029595 1.0e-17 95.9 176 40.9
SEGI_30926 Sequoiadendron giganteum HOM05D001045 ORTHO05D004836 1.7e-17 95.1 62 80.6
TPR.G30015 Trifolium pratense HOM05D001045 ORTHO05D004836 2.5e-16 91.3 77 67.5
VMungo1080G0823 Vigna mungo HOM05D001045 ORTHO05D008141 4.6e-10 70.5 67 49.3
FAN18G0261 Fragaria x ananassa HOM05D001045 ORTHO05D004836 6.6e-09 66.6 40 85.0
FAN16G0247 Fragaria x ananassa HOM05D001045 ORTHO05D029595 8.6e-09 66.2 45 75.6
Pp3c5_16690 Physcomitrium patens HOM05D002001 ORTHO05D006833 3.1e-06 57.8 107 29.9
AUR62010473 Chenopodium quinoa HOM05D002001 ORTHO05D006833 5.2e-06 57.0 187 26.2
Haze_26947 Corylus avellana HOM05D002001 ORTHO05D006833 6.8e-06 56.6 97 29.9
Dinv08510 Davidia involucrata HOM05D039104 ORTHO05D016271 6.8e-06 56.6 120 30.8


User provided reference genes

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