Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p045745 Quercus lobata HOM05D004747 ORTHO05D006051 7.4e-64 248.4 328 100.0
CiPaw.01G036600 Carya illinoinensis HOM05D004747 ORTHO05D006051 6.5e-36 155.6 79 97.5
Haze_15104 Corylus avellana HOM05D004747 ORTHO05D006051 3.6e-34 149.8 331 77.3
MD02G1149700 Malus domestica HOM05D004747 ORTHO05D006051 1.5e-32 144.4 77 92.2
CiPaw.02G016400 Carya illinoinensis HOM05D004747 ORTHO05D006051 2.0e-32 144.1 329 78.7
MD15G1264300 Malus domestica HOM05D004747 ORTHO05D006051 2.6e-32 143.7 77 90.9
Cfa004298 Carpinus fangiana HOM05D000682 ORTHO05D000510 3.4e-32 143.3 326 43.9
TWI09G1640 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 3.4e-32 143.3 77 90.9
Manes.01G134400 Manihot esculenta HOM05D004747 ORTHO05D006051 4.4e-32 142.9 77 92.2
RcHm_v2.0_Chr2g0101831 Rosa chinensis HOM05D004747 ORTHO05D006051 5.7e-32 142.5 77 89.6
ClCG01G019460 Citrullus lanatus HOM05D004747 ORTHO05D006051 1.3e-31 141.4 77 90.9
Prupe.7G153200 Prunus persica HOM05D004747 ORTHO05D006051 1.3e-31 141.4 77 89.6
MELO3C007821.2 Cucumis melo HOM05D004747 ORTHO05D006051 1.7e-31 141.0 77 90.9
Atru.chr3.560 Acer truncatum HOM05D004747 ORTHO05D006051 2.2e-31 140.6 77 89.6
Sed0017755 Sechium edule HOM05D004747 ORTHO05D006051 2.2e-31 140.6 77 89.6
TWI73G1158 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 2.2e-31 140.6 77 89.6
Psat4g092040 Pisum sativum HOM05D004747 ORTHO05D006051 3.7e-31 139.8 77 92.2
Sabra07G0023600 Salix brachista HOM05D004747 ORTHO05D006051 3.7e-31 139.8 79 87.3
Ca_22260_v3 Cicer arietinum L. HOM05D004747 ORTHO05D006051 4.8e-31 139.4 79 89.9
Lalb_Chr09g0333571 Lupinus albus HOM05D004747 ORTHO05D006051 4.8e-31 139.4 79 89.9
CSS0048961 Camellia sinensis var. sinensis HOM05D004747 ORTHO05D006051 6.3e-31 139.0 77 87.0
Ciclev10025502m.g Citrus clementina HOM05D004747 ORTHO05D006051 6.3e-31 139.0 77 89.6
FAN28G1132 Fragaria x ananassa HOM05D004747 ORTHO05D006051 8.3e-31 138.7 330 77.3
TWI53G0963 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 8.3e-31 138.7 77 88.3
Cc07_g09390 Coffea canephora HOM05D004747 ORTHO05D006051 1.1e-30 138.3 77 87.0
Lalb_Chr05g0227631 Lupinus albus HOM05D004747 ORTHO05D006051 1.1e-30 138.3 77 90.9
Sed0005805 Sechium edule HOM05D004747 ORTHO05D006051 1.1e-30 138.3 77 89.6
PGR102G2748 Punica granatum HOM05D004747 ORTHO05D006051 1.4e-30 137.9 77 90.9
Sabra05G0102100 Salix brachista HOM05D004747 ORTHO05D006051 1.8e-30 137.5 77 88.3
Actinidia19177 Actinidia chinensis HOM05D004747 ORTHO05D006051 2.4e-30 137.1 77 85.7
Potri.005G124300 Populus trichocarpa HOM05D004747 ORTHO05D006051 2.4e-30 137.1 77 88.3
Potri.007G026900 Populus trichocarpa HOM05D004747 ORTHO05D006051 2.4e-30 137.1 77 87.0
DCAR_025922 Daucus carota HOM05D004747 ORTHO05D006051 3.1e-30 136.7 77 87.0
arahy.Tifrunner.gnm1.ann1.0AQ0IW Arachis hypogaea HOM05D004747 ORTHO05D006051 4.1e-30 136.3 77 88.3
Manes.02G092600 Manihot esculenta HOM05D004747 ORTHO05D006051 4.1e-30 136.3 77 89.6
TPR.G34973 Trifolium pratense HOM05D004747 ORTHO05D006051 4.1e-30 136.3 76 90.8
Medtr8g077840 Medicago truncatula HOM05D004747 ORTHO05D006051 7.0e-30 135.6 77 88.3
GSVIVG01018981001 Vitis vinifera HOM05D004747 ORTHO05D006051 9.1e-30 135.2 77 85.7
FAN23G1256 Fragaria x ananassa HOM05D004747 ORTHO05D006051 1.2e-29 134.8 77 87.0
Ah.02g126430 Amaranthus hybridus HOM05D004747 ORTHO05D006051 1.6e-29 134.4 77 89.6
CANSAT01G3054 Cannabis sativa HOM05D004747 ORTHO05D006051 1.6e-29 134.4 78 88.5
TAR628G1004 Trochodendron aralioides HOM05D004747 ORTHO05D006051 1.6e-29 134.4 77 85.7
vmacro12724 Vaccinium macrocarpon HOM05D004747 ORTHO05D006051 1.6e-29 134.4 79 82.3
Dinv26824 Davidia involucrata HOM05D004747 ORTHO05D006051 2.0e-29 134.0 77 87.0
Dinv39972 Davidia involucrata HOM05D004747 ORTHO05D006051 2.0e-29 134.0 77 85.7
Phvul.002G029300 Phaseolus vulgaris HOM05D004747 ORTHO05D006051 2.0e-29 134.0 77 89.6
TAR376G1008 Trochodendron aralioides HOM05D004747 ORTHO05D006051 2.0e-29 134.0 77 84.4
VMungo1215G2053 Vigna mungo HOM05D004747 ORTHO05D006051 2.0e-29 134.0 77 89.6
Glyma.11G067300 Glycine max HOM05D004747 ORTHO05D006051 2.7e-29 133.7 79 87.3
Lj4g0010267 Lotus japonicus HOM05D004747 ORTHO05D006051 2.7e-29 133.7 75 90.7
EL10Ac6g14938 Beta vulgaris HOM05D004747 ORTHO05D006051 3.5e-29 133.3 77 88.3
ECA238G3955 Erigeron canadensis HOM05D004747 ORTHO05D006051 3.5e-29 133.3 77 84.4
CsaV3_6G046180 Cucumis sativus L. HOM05D004747 ORTHO05D006051 4.5e-29 132.9 329 74.2
PSO764G0172 Papaver somniferum HOM05D004747 ORTHO05D006051 4.5e-29 132.9 79 83.5
Rhsim08G0114500 Rhododendron simsii HOM05D004747 ORTHO05D006051 4.5e-29 132.9 74 86.5
DCAR_017262 Daucus carota HOM05D004747 ORTHO05D006051 5.9e-29 132.5 77 84.4
FvH4_1g13450 Fragaria vesca HOM05D004747 ORTHO05D006051 5.9e-29 132.5 77 85.7
Glyma.01G175100 Glycine max HOM05D004747 ORTHO05D006051 5.9e-29 132.5 77 88.3
Lsat_1_v5_gn_2_76601 Lactuca sativa HOM05D004747 ORTHO05D006051 5.9e-29 132.5 77 85.7
CSS0024014 Camellia sinensis var. sinensis HOM05D004747 ORTHO05D006051 1.0e-28 131.7 78 84.6
HanXRQChr07g0192831 Helianthus annuus HOM05D004747 ORTHO05D006051 1.3e-28 131.3 77 87.0
MBI16_g37699_MAGBIO Magnolia biondii HOM05D004747 ORTHO05D006051 1.3e-28 131.3 79 81.0
HanXRQChr14g0441201 Helianthus annuus HOM05D004747 ORTHO05D006051 2.2e-28 130.6 77 83.1
ATR0733G064 Amborella trichopoda HOM05D004747 ORTHO05D006051 2.9e-28 130.2 77 81.8
PSO731G0026 Papaver somniferum HOM05D004747 ORTHO05D006051 2.9e-28 130.2 79 82.3
vmacro17845 Vaccinium macrocarpon HOM05D004747 ORTHO05D006051 2.9e-28 130.2 85 76.5
Eucgr.H01267 Eucalyptus grandis HOM05D004747 ORTHO05D006051 3.8e-28 129.8 78 84.6
Thecc.01G037400 Theobroma cacao HOM05D004747 ORTHO05D006051 3.8e-28 129.8 77 89.6
AUR62003163 Chenopodium quinoa HOM05D004747 ORTHO05D006051 5.0e-28 129.4 77 87.0
AUR62007983 Chenopodium quinoa HOM05D004747 ORTHO05D006051 5.0e-28 129.4 77 87.0
Aqoxy5G01657 Aquilegia oxysepala HOM05D004747 ORTHO05D006051 6.5e-28 129.0 78 82.1
Sc16g0000910 Simmondsia chinensis HOM05D004747 ORTHO05D006051 6.5e-28 129.0 77 84.4
Sc07g0000250 Simmondsia chinensis HOM05D004747 ORTHO05D006051 8.5e-28 128.6 77 87.0
Lalb_Chr05g0212861 Lupinus albus HOM05D004747 ORTHO05D006051 1.1e-27 128.3 76 84.2
Gohir.A10G095200 Gossypium hirsutum HOM05D004747 ORTHO05D006051 1.5e-27 127.9 77 87.0
Gohir.D10G092700 Gossypium hirsutum HOM05D004747 ORTHO05D006051 1.5e-27 127.9 77 87.0
Gorai.011G101900 Gossypium raimondii HOM05D004747 ORTHO05D006051 1.5e-27 127.9 77 87.0
COL.COLO4_22095 Corchorus olitorius HOM05D004747 ORTHO05D006051 2.5e-27 127.1 77 87.0
Migut.H01001 Erythranthe guttata HOM05D004747 ORTHO05D006051 3.2e-27 126.7 77 81.8
Hund14148 Selenicereus undatus HOM05D004747 ORTHO05D006051 3.2e-27 126.7 75 90.7
Lj4A199T81 Lonicera japonica HOM05D004747 ORTHO05D006051 4.2e-27 126.3 77 83.1
SGA_v2.0_scaffold276G46638 Striga asiatica HOM05D004747 ORTHO05D006051 4.2e-27 126.3 77 80.5
Nn1g05031 Nelumbo nucifera HOM05D004747 ORTHO05D006051 5.5e-27 125.9 81 79.0
arahy.Tifrunner.gnm1.ann1.Q9RGLK Arachis hypogaea HOM05D004747 ORTHO05D006051 7.2e-27 125.6 77 87.0
FAN26G3322 Fragaria x ananassa HOM05D004747 ORTHO05D006051 7.2e-27 125.6 330 70.3
HPP92_014469 Vanilla planifolia HOM05D004747 ORTHO05D006051 9.5e-27 125.2 79 81.0
FAN19G0426 Fragaria x ananassa HOM05D004747 ORTHO05D006051 2.8e-26 123.6 330 79.4
Oeu054757.1 Olea europaea HOM05D004747 ORTHO05D006051 4.7e-26 122.9 79 79.7
PSO541G4083 Papaver somniferum HOM05D004747 ORTHO05D006051 6.1e-26 122.5 81 79.0
Duzib264G0087 Durio zibethinus HOM05D004747 ORTHO05D006051 1.0e-25 121.7 77 85.7
PSO675G8944 Papaver somniferum HOM05D004747 ORTHO05D006051 1.8e-25 120.9 81 76.5
Pp3c11_26490 Physcomitrium patens HOM05D004747 ORTHO05D006051 1.5e-24 117.9 77 76.6
SMO196G0071 Selaginella moellendorffii HOM05D004747 ORTHO05D006051 2.6e-24 117.1 72 81.9
Pp3c7_6390 Physcomitrium patens HOM05D004747 ORTHO05D006051 3.4e-24 116.7 77 75.3
Duzib187G1223 Durio zibethinus HOM05D004747 ORTHO05D006051 4.4e-24 116.3 77 84.4
Mapoly0005s0256 Marchantia polymorpha HOM05D004747 ORTHO05D006051 7.5e-24 115.5 77 76.6
CAN.G358.106 Capsicum annuum HOM05D004747 ORTHO05D006051 9.8e-24 115.2 78 79.5
Thhalv10004249m.g Eutrema salsugineum HOM05D004747 ORTHO05D006051 1.3e-23 114.8 77 76.6
PGSC0003DMG400014893 Solanum tuberosum HOM05D004747 ORTHO05D006051 2.2e-23 114.0 80 76.2
Cpa.g.sc337.6 Carica papaya HOM05D004747 ORTHO05D006051 6.3e-23 112.5 57 91.2
CDE03G0295 Ceratophyllum demersum HOM05D004747 ORTHO05D006051 6.3e-23 112.5 80 73.8
CDE04G0203 Ceratophyllum demersum HOM05D004747 ORTHO05D006051 6.3e-23 112.5 80 73.8
Nitab4.5_0000434g0070 Nicotiana tabacum HOM05D004747 ORTHO05D006051 6.3e-23 112.5 78 78.2
Nitab4.5_0004711g0020 Nicotiana tabacum HOM05D004747 ORTHO05D006051 6.3e-23 112.5 78 78.2
Aa31LG1G15300 Aethionema arabicum HOM05D004747 ORTHO05D006051 1.1e-22 111.7 77 79.2
Solyc02g085420.4 Solanum lycopersicum HOM05D004747 ORTHO05D006051 1.4e-22 111.3 78 76.9
Sopen02g030100 Solanum pennellii HOM05D004747 ORTHO05D006051 1.4e-22 111.3 78 76.9
Sp2g29940 Schrenkiella parvula HOM05D004747 ORTHO05D006051 4.1e-22 109.8 79 75.9
Peaxi162Scf00515g00430 Petunia axillaris HOM05D004747 ORTHO05D006051 5.4e-22 109.4 79 74.7
BcaB04g20104 Brassica carinata HOM05D000104 ORTHO05D006241 9.2e-22 108.6 80 73.8
BcaB02g09994 Brassica carinata HOM05D000104 ORTHO05D006241 2.0e-21 107.5 77 71.4
A09p09800 Brassica napus HOM05D000104 ORTHO05D006241 2.0e-21 107.5 80 72.5
C09p11600 Brassica napus HOM05D000104 ORTHO05D006241 2.0e-21 107.5 80 72.5
BolC9t54053H Brassica oleracea HOM05D004747 ORTHO05D006051 2.0e-21 107.5 80 72.5
BraA09t36627Z Brassica rapa HOM05D000104 ORTHO05D006241 2.0e-21 107.5 80 72.5
CBR_g28042 Chara braunii HOM05D004747 ORTHO05D006051 3.5e-21 106.7 58 86.2
Zm00001eb224440 Zea mays HOM05D004747 ORTHO05D006051 4.5e-21 106.3 76 73.7
Thhalv10010375m.g Eutrema salsugineum HOM05D004747 ORTHO05D006051 2.3e-20 104.0 78 73.1
C07p25050 Brassica napus HOM05D004747 ORTHO05D006051 3.8e-20 103.2 76 72.4
Oeu007440.1 Olea europaea HOM05D004747 ORTHO05D006051 3.8e-20 103.2 56 85.7
Carub.0005s1700 Capsella rubella HOM05D004747 ORTHO05D006051 6.6e-20 102.4 79 77.2
AL5G30830 Arabidopsis lyrata HOM05D004747 ORTHO05D006051 8.6e-20 102.1 78 74.4
AT3G50670 Arabidopsis thaliana HOM05D004747 ORTHO05D006051 8.6e-20 102.1 78 74.4
Sp5g11550 Schrenkiella parvula HOM05D004747 ORTHO05D006051 1.5e-19 101.3 72 72.2
unitig_21.g20956 Utricularia gibba HOM05D004747 ORTHO05D006051 1.5e-19 101.3 77 68.8
BcaC04g23156 Brassica carinata HOM05D004747 ORTHO05D006051 4.3e-19 99.8 73 68.5
BolC7t43037H Brassica oleracea HOM05D002587 ORTHO05D002778 1.2e-18 98.2 78 70.5
SGA_v2.0_scaffold33G13371 Striga asiatica HOM05D004747 ORTHO05D006051 1.6e-18 97.8 57 80.7
Psat3g054320 Pisum sativum HOM05D004747 ORTHO05D006051 6.8e-17 92.4 57 77.2
Psat0s889g0040 Pisum sativum HOM05D004747 ORTHO05D006051 1.5e-16 91.3 59 76.3
MCO05G091 Micromonas commoda HOM05D004747 ORTHO05D006051 1.6e-13 81.3 59 62.7
Cre16.g656250 Chlamydomonas reinhardtii HOM05D004747 ORTHO05D006051 6.6e-12 75.9 82 56.1
PRCOL_00001882 Prasinoderma coloniale HOM05D004747 ORTHO05D006051 9.5e-11 72.0 44 75.0
BcaC06g34739 Brassica carinata HOM05D004747 ORTHO05D006051 1.6e-10 71.2 39 84.6
Cfa025930 Carpinus fangiana HOM05D004747 ORTHO05D006051 2.6e-08 63.9 41 68.3
Glyma.02G057600 Glycine max HOM05D004747 ORTHO05D006051 5.8e-08 62.8 71 54.9
Rhsim07G0145800 Rhododendron simsii HOM05D004747 ORTHO05D001064 1.9e-06 57.8 31 77.4


User provided reference genes

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