Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p031240 Quercus lobata HOM05D003387 ORTHO05D005400 1.2e-118 429.9 215 100.0
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.5e-105 385.6 215 87.9
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 2.5e-105 385.6 215 88.4
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 1.6e-104 382.9 215 87.4
Atru.chr13.2064 Acer truncatum HOM05D003387 ORTHO05D005400 2.6e-102 375.6 215 84.2
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 4.5e-102 374.8 215 85.6
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 5.9e-102 374.4 212 86.3
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 7.7e-102 374.0 215 86.0
Nitab4.5_0010347g0020 Nicotiana tabacum HOM05D003387 ORTHO05D005400 1.0e-101 373.6 215 84.7
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 1.3e-101 373.2 215 85.1
Nitab4.5_0002445g0040 Nicotiana tabacum HOM05D003387 ORTHO05D005400 1.3e-101 373.2 215 85.1
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 1.7e-101 372.9 215 86.0
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 1.7e-101 372.9 215 85.1
Cpa.g.sc49.99 Carica papaya HOM05D003387 ORTHO05D005400 2.2e-101 372.5 211 86.3
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.2e-101 372.5 215 84.7
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 2.9e-101 372.1 215 84.7
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 2.9e-101 372.1 215 84.7
Haze_17786 Corylus avellana HOM05D003387 ORTHO05D005400 3.8e-101 371.7 215 84.7
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 6.5e-101 370.9 215 84.7
PSO170G1597 Papaver somniferum HOM05D003387 ORTHO05D005400 8.5e-101 370.5 215 84.2
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 8.5e-101 370.5 215 85.1
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 1.1e-100 370.2 215 82.8
QL02p037730 Quercus lobata HOM05D003387 ORTHO05D005400 1.1e-100 370.2 215 84.7
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 1.1e-100 370.2 215 84.7
Manes.02G181600 Manihot esculenta HOM05D003387 ORTHO05D005400 2.5e-100 369.0 215 84.2
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 2.5e-100 369.0 215 84.2
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 3.2e-100 368.6 215 83.3
Duzib116G0668 Durio zibethinus HOM05D003387 ORTHO05D005400 3.2e-100 368.6 215 84.2
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 3.2e-100 368.6 215 84.2
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 3.2e-100 368.6 215 84.2
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 3.2e-100 368.6 215 84.2
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 4.2e-100 368.2 215 84.2
SGA_v2.0_scaffold274G46519 Striga asiatica HOM05D003387 ORTHO05D005400 7.2e-100 367.5 215 81.9
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 9.4e-100 367.1 215 84.2
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 1.6e-99 366.3 213 84.5
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 1.6e-99 366.3 215 83.7
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.6e-99 366.3 215 83.7
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 1.6e-99 366.3 215 85.6
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 2.1e-99 365.9 215 81.4
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 2.1e-99 365.9 215 84.7
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 2.1e-99 365.9 215 83.7
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 2.7e-99 365.5 215 83.3
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 3.6e-99 365.2 215 83.3
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 3.6e-99 365.2 215 83.3
FAN27G0365 Fragaria x ananassa HOM05D003387 ORTHO05D005400 4.6e-99 364.8 215 83.7
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 7.9e-99 364.0 215 82.8
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 7.9e-99 364.0 215 83.3
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 1.4e-98 363.2 215 81.4
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 1.4e-98 363.2 215 83.3
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 3.0e-98 362.1 215 81.9
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 3.0e-98 362.1 215 81.4
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 3.9e-98 361.7 215 80.5
MBI16_g07738_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D005400 5.1e-98 361.3 215 83.3
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 6.7e-98 360.9 215 82.3
Actinidia29542 Actinidia chinensis HOM05D003387 ORTHO05D005400 8.8e-98 360.5 215 81.9
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 8.8e-98 360.5 215 80.9
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 8.8e-98 360.5 215 80.9
COL.COLO4_03566 Corchorus olitorius HOM05D003387 ORTHO05D005400 1.1e-97 360.1 215 81.9
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 1.1e-97 360.1 215 81.4
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 1.5e-97 359.8 215 80.5
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 1.5e-97 359.8 215 82.3
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 2.0e-97 359.4 215 81.9
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 2.0e-97 359.4 215 82.3
Sabra05G0148200 Salix brachista HOM05D003387 ORTHO05D005400 2.0e-97 359.4 215 83.3
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 2.5e-97 359.0 215 80.5
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 2.5e-97 359.0 215 80.5
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 3.3e-97 358.6 215 80.9
ATR1126G056 Amborella trichopoda HOM05D003387 ORTHO05D005400 3.3e-97 358.6 215 80.5
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 4.3e-97 358.2 215 81.4
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 4.3e-97 358.2 215 79.5
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 4.3e-97 358.2 215 81.9
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 5.7e-97 357.8 215 80.0
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 5.7e-97 357.8 215 79.5
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 5.7e-97 357.8 215 79.5
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 5.7e-97 357.8 215 79.5
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 5.7e-97 357.8 215 81.4
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 7.4e-97 357.5 215 80.5
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 7.4e-97 357.5 215 80.5
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 7.4e-97 357.5 215 80.5
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 7.4e-97 357.5 215 81.4
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 7.4e-97 357.5 215 80.5
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 1.3e-96 356.7 215 80.0
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 1.3e-96 356.7 215 80.0
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 1.3e-96 356.7 215 80.5
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 1.7e-96 356.3 215 81.4
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 2.2e-96 355.9 215 80.0
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 3.7e-96 355.1 215 80.0
EL10Ac1g01585 Beta vulgaris HOM05D003387 ORTHO05D005400 4.8e-96 354.8 215 80.0
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 4.8e-96 354.8 215 80.9
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 4.8e-96 354.8 215 79.1
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 6.3e-96 354.4 215 79.1
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 6.3e-96 354.4 215 79.1
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 6.3e-96 354.4 215 79.1
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 6.3e-96 354.4 240 75.0
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 8.2e-96 354.0 215 78.1
Sed0013690 Sechium edule HOM05D003387 ORTHO05D005400 8.2e-96 354.0 215 78.6
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 1.8e-95 352.8 215 79.5
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 1.8e-95 352.8 215 79.5
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 1.8e-95 352.8 211 82.0
AUR62026677 Chenopodium quinoa HOM05D003387 ORTHO05D005400 2.4e-95 352.4 215 78.6
AUR62040585 Chenopodium quinoa HOM05D003387 ORTHO05D005400 3.1e-95 352.1 215 78.6
CDE08G0132 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 4.1e-95 351.7 215 79.5
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 5.3e-95 351.3 215 78.1
Lalb_Chr19g0130191 Lupinus albus HOM05D003387 ORTHO05D005400 6.9e-95 350.9 215 79.5
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 1.2e-94 350.1 214 79.4
ATR0115G003 Amborella trichopoda HOM05D003387 ORTHO05D005400 2.0e-94 349.4 215 79.1
Solyc12g019750.3 Solanum lycopersicum HOM05D003387 ORTHO05D005400 4.5e-94 348.2 215 79.5
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 4.5e-94 348.2 215 79.5
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 4.5e-94 348.2 210 81.0
Ca_04511_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.0e-93 347.1 215 80.0
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 2.9e-93 345.5 215 78.1
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 3.8e-93 345.1 215 77.7
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 5.0e-93 344.7 215 78.6
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 5.0e-93 344.7 215 78.1
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 5.0e-93 344.7 215 78.1
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 6.5e-93 344.4 215 77.7
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.4e-92 343.2 224 75.9
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 5.5e-92 341.3 220 78.6
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 5.5e-92 341.3 215 75.8
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 9.4e-92 340.5 203 80.8
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 9.4e-92 340.5 211 78.7
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.2e-91 340.1 214 79.4
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 7.9e-91 337.4 215 75.3
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 1.0e-90 337.0 215 77.7
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 1.8e-90 336.3 214 78.0
AUR62003637 Chenopodium quinoa HOM05D003387 ORTHO05D005400 5.1e-90 334.7 214 77.1
TPR.G28008 Trifolium pratense HOM05D003387 ORTHO05D005400 6.7e-90 334.3 215 74.4
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 1.1e-89 333.6 215 75.3
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 2.0e-89 332.8 200 81.5
arahy.Tifrunner.gnm1.ann1.BQ9MTK Arachis hypogaea HOM05D003387 ORTHO05D005400 4.4e-89 331.6 225 73.8
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 4.4e-89 331.6 217 76.0
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 2.2e-88 329.3 215 74.9
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 2.8e-88 328.9 215 74.9
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 2.8e-88 328.9 225 75.1
Os05g0437300 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 2.4e-87 325.9 215 72.1
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 3.1e-87 325.5 215 71.2
SEGI_27673 Sequoiadendron giganteum HOM05D003387 ORTHO05D005400 1.2e-86 323.6 211 73.5
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 8.5e-85 317.4 224 73.7
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 8.8e-82 307.4 215 67.4
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 1.5e-81 306.6 215 69.8
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 2.6e-81 305.8 215 69.3
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 9.7e-81 303.9 217 68.7
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 6.3e-80 301.2 215 67.9
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 4.5e-78 295.0 203 68.0
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 1.4e-74 283.5 213 64.3
HPP92_001090 Vanilla planifolia HOM05D003387 ORTHO05D005400 6.8e-74 281.2 213 63.8
arahy.Tifrunner.gnm1.ann1.NR2FSQ Arachis hypogaea HOM05D003387 ORTHO05D005400 5.2e-66 255.0 186 69.4
Nitab4.5_0003909g0020 Nicotiana tabacum HOM05D003387 ORTHO05D005400 2.7e-62 242.7 215 61.4
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 4.5e-62 241.9 215 61.4
Peaxi162Scf00249g00068 Petunia axillaris HOM05D003387 ORTHO05D031551 3.4e-57 225.7 212 60.4
Medtr6g037540 Medicago truncatula HOM05D003387 ORTHO05D030081 8.6e-45 184.5 129 68.2
SMO146G0120 Selaginella moellendorffii HOM05D003387 ORTHO05D002201 3.7e-40 169.1 203 44.3
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 8.6e-37 157.9 84 90.5
Mapoly0051s0071 Marchantia polymorpha HOM05D003387 ORTHO05D255399 1.2e-35 154.1 176 43.8
Medtr6g037550 Medicago truncatula HOM05D003387 ORTHO05D005400 8.9e-34 147.9 84 81.0
SMO171G0107 Selaginella moellendorffii HOM05D003387 ORTHO05D002201 1.5e-33 147.1 200 44.0
MD00G1066300 Malus domestica HOM05D003387 ORTHO05D005400 3.4e-33 146.0 84 84.5
arahy.Tifrunner.gnm1.ann1.M2ZNIJ Arachis hypogaea HOM05D003387 ORTHO05D031551 4.4e-33 145.6 82 81.7
Medtr6g037510 Medicago truncatula HOM05D003387 ORTHO05D031551 2.9e-32 142.9 89 76.4
TPR.G28006 Trifolium pratense HOM05D003387 ORTHO05D030081 9.2e-31 137.9 102 67.6
MD00G1066200 Malus domestica HOM05D003387 ORTHO05D030081 7.8e-30 134.8 75 82.7
SMO171G0059 Selaginella moellendorffii HOM05D003387 ORTHO05D376012 1.5e-25 120.6 209 38.3
Medtr8g072130 Medicago truncatula HOM05D003387 ORTHO05D030081 3.4e-25 119.4 123 50.4
Carub.0001s4466 Capsella rubella HOM05D003387 ORTHO05D114561 5.6e-20 102.1 80 67.5
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 4.8e-19 99.0 50 92.0
Medtr6g037520 Medicago truncatula HOM05D003387 ORTHO05D257462 8.1e-11 71.6 54 63.0
Actinidia10635 Actinidia chinensis HOM05D003387 ORTHO05D005400 2.4e-10 70.1 36 91.7
SMO196G0024 Selaginella moellendorffii HOM05D003387 ORTHO05D375944 5.8e-09 65.5 142 32.4
Nn6g35013 Nelumbo nucifera HOM05D003387 ORTHO05D005400 1.1e-07 61.2 44 70.5
AUR62017947 Chenopodium quinoa HOM05D003387 ORTHO05D138110 7.1e-07 58.5 36 75.0
TPR.G40579 Trifolium pratense HOM05D003387 ORTHO05D411234 7.9e-06 55.1 34 73.5


User provided reference genes

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