Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 5.6e-229 798.1 726 100.0
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 3.1e-163 579.7 1023 66.3
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 1.4e-139 501.1 912 64.4
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 5.3e-139 499.2 1015 62.3
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 2.0e-138 497.3 1002 62.4
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 5.9e-138 495.7 1003 62.6
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 5.5e-136 489.2 1015 61.8
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 1.4e-131 474.6 725 77.7
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 3.1e-131 473.4 725 77.5
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 2.2e-129 467.2 1016 60.5
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 8.5e-129 465.3 1016 60.6
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 4.2e-128 463.0 735 73.7
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 7.2e-128 462.2 721 77.3
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 1.6e-127 461.1 721 77.4
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 1.4e-126 458.0 1030 56.9
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 3.0e-126 456.8 721 78.4
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 3.0e-126 456.8 721 78.4
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 5.2e-126 456.1 721 78.4
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 6.8e-126 455.7 721 78.2
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 1.5e-125 454.5 721 77.3
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 1.5e-125 454.5 721 77.9
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 5.7e-125 452.6 721 77.0
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 2.2e-124 450.7 733 64.9
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 4.8e-124 449.5 721 75.9
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 2.4e-123 447.2 1018 61.3
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 1.6e-122 444.5 735 66.9
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 1.6e-122 444.5 735 69.8
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 1.7e-121 441.0 721 77.1
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 3.8e-121 439.9 1024 51.8
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 8.5e-121 438.7 737 67.0
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 1.1e-120 438.3 733 70.4
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 4.2e-120 436.4 721 75.7
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 4.2e-120 436.4 721 75.0
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 1.2e-119 434.9 720 74.7
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 2.1e-119 434.1 721 77.1
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 2.8e-119 433.7 721 73.5
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 4.7e-119 433.0 1031 54.2
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 1.4e-118 431.4 721 76.6
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 6.8e-118 429.1 723 72.8
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 6.8e-118 429.1 681 80.3
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 1.2e-117 428.3 771 72.2
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.5e-117 427.9 763 71.8
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 2.0e-117 427.6 720 75.1
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 3.4e-117 426.8 721 70.3
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 9.8e-117 425.2 721 74.9
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 1.3e-116 424.9 1013 59.0
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 2.8e-116 423.7 720 74.3
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 4.9e-116 422.9 993 59.6
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 8.3e-116 422.2 721 75.9
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 1.4e-115 421.4 771 72.0
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 1.8e-115 421.0 721 75.6
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 1.8e-115 421.0 771 71.9
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 2.4e-115 420.6 720 75.0
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 5.4e-115 419.5 771 72.0
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 9.2e-115 418.7 771 71.9
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 9.2e-115 418.7 720 74.0
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 1.6e-114 417.9 720 74.2
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 1.6e-114 417.9 719 74.4
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 5.9e-114 416.0 720 74.9
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.7e-113 414.5 721 74.8
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 2.3e-113 414.1 720 74.6
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 2.9e-113 413.7 722 75.2
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 6.6e-113 412.5 720 73.6
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 8.6e-113 412.1 720 74.6
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 8.6e-113 412.1 720 74.6
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 1.9e-112 411.0 727 74.3
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 4.3e-112 409.8 720 74.2
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 5.6e-112 409.5 757 71.3
CAN.G248.36 Capsicum annuum HOM05D003327 ORTHO05D004535 1.2e-111 408.3 720 72.9
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 1.2e-111 408.3 721 75.0
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 3.6e-111 406.8 720 74.4
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 3.6e-111 406.8 720 74.4
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 3.6e-111 406.8 720 73.8
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 6.1e-111 406.0 721 74.9
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 2.3e-110 404.1 722 74.9
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 3.0e-110 403.7 723 69.0
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 4.0e-110 403.3 720 73.5
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 5.2e-110 402.9 720 71.7
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 2.6e-109 400.6 721 60.5
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 2.6e-109 400.6 721 73.5
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 7.5e-109 399.1 745 62.6
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 4.9e-108 396.4 713 57.2
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 1.8e-107 394.4 721 73.6
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 3.2e-107 393.7 721 73.9
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 5.4e-107 392.9 709 59.9
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 1.6e-106 391.3 1013 57.6
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 3.5e-106 390.2 720 73.1
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 3.5e-106 390.2 720 73.3
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 7.8e-106 389.0 615 69.6
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 2.3e-105 387.5 721 67.1
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 2.3e-105 387.5 1013 57.5
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 3.3e-104 383.6 602 82.7
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 8.0e-103 379.0 766 69.1
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 1.8e-102 377.9 719 72.5
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 2.3e-102 377.5 1020 50.3
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 5.2e-102 376.3 721 69.6
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 4.4e-101 373.2 720 72.6
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 7.5e-101 372.5 717 68.5
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 4.1e-99 366.7 721 68.5
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 6.0e-98 362.8 602 81.2
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 8.6e-97 359.0 721 70.2
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 1.2e-95 355.1 721 69.8
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 2.1e-95 354.4 730 57.0
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 3.6e-95 353.6 721 72.0
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 8.1e-95 352.4 721 71.8
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.1e-94 352.1 713 66.6
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 1.4e-94 351.7 722 71.9
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 4.0e-94 350.1 721 68.7
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 4.9e-92 343.2 603 65.8
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 1.1e-91 342.0 711 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 8.4e-84 315.8 721 61.4
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 8.4e-84 315.8 727 59.1
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 1.3e-81 308.5 722 70.5
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 1.1e-80 305.4 711 68.4
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 1.2e-79 302.0 604 58.4
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 4.9e-76 290.0 597 65.5
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 2.4e-75 287.7 597 65.2
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 5.1e-73 280.0 838 43.6
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 1.3e-71 275.4 613 63.1
RcHm_v2.0_Chr6g0275031 Rosa chinensis HOM05D003327 ORTHO05D004535 4.8e-71 273.5 288 90.3
BcaC01g06678 Brassica carinata HOM05D003327 ORTHO05D004535 9.0e-70 269.2 463 64.8
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 1.5e-69 268.5 605 64.0
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 2.2e-68 264.6 721 55.6
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 4.9e-68 263.5 600 74.3
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.4e-67 261.9 713 45.7
Lj1g0006616 Lotus japonicus HOM05D003327 ORTHO05D004535 4.6e-66 256.9 623 52.8
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 8.7e-65 252.7 488 68.4
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 5.6e-64 250.0 722 65.1
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 2.1e-63 248.1 721 37.4
C03p36760 Brassica napus HOM05D003327 ORTHO05D004535 2.6e-61 241.1 463 74.1
C03p36710 Brassica napus HOM05D003327 ORTHO05D004535 1.3e-60 238.8 449 57.7
BolC3t15985H Brassica oleracea HOM05D003327 ORTHO05D004535 1.3e-60 238.8 449 57.7
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 2.9e-60 237.7 613 53.5
PRCOL_00002302 Prasinoderma coloniale HOM05D003327 ORTHO05D004535 8.4e-60 236.1 609 54.5
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 9.3e-59 232.6 466 62.7
Prupe.2G325100 Prunus persica HOM05D003327 ORTHO05D004535 1.1e-54 219.2 286 79.0
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 1.0e-52 212.6 733 51.6
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 1.0e-49 202.6 277 79.1
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 1.1e-48 199.1 604 49.3
Ah.08g216420 Amaranthus hybridus HOM05D003327 ORTHO05D004535 3.7e-47 194.1 359 61.0
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 3.1e-46 191.0 604 55.6
TPR.G36382 Trifolium pratense HOM05D003327 ORTHO05D004535 6.9e-46 189.9 108 80.6
Thecc.05G055100 Theobroma cacao HOM05D003327 ORTHO05D004535 2.6e-45 188.0 94 92.6
Prupe.3G207300 Prunus persica HOM05D003327 ORTHO05D004535 1.3e-44 185.7 116 71.6
Nn2g15288 Nelumbo nucifera HOM05D003327 ORTHO05D004535 2.2e-44 184.9 101 83.2
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 5.5e-43 180.3 734 46.5
RcHm_v2.0_Chr6g0275041 Rosa chinensis HOM05D003327 ORTHO05D004535 2.7e-42 177.9 325 50.8
BraA03t12222Z Brassica rapa HOM05D003327 ORTHO05D004535 4.6e-42 177.2 115 70.4
A03p30430 Brassica napus HOM05D003327 ORTHO05D004535 5.1e-41 173.7 114 69.3
BolC3t15990H Brassica oleracea HOM05D003327 ORTHO05D004535 2.0e-37 161.8 463 67.6
BcaC01g06673 Brassica carinata HOM05D003327 ORTHO05D004535 5.9e-37 160.2 101 71.3
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 1.0e-36 159.5 114 66.7
ECA238G3940 Erigeron canadensis HOM05D003327 ORTHO05D004535 1.0e-33 149.4 425 30.8
Lalb_Chr24g0399861 Lupinus albus HOM05D003327 ORTHO05D004535 2.0e-32 145.2 264 87.5
Dinv12916 Davidia involucrata HOM05D003327 ORTHO05D004535 4.8e-31 140.6 374 33.2
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 5.5e-27 127.1 321 42.7
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 7.2e-27 126.7 616 35.1
BcaB01g02538 Brassica carinata HOM05D003327 ORTHO05D004535 5.2e-25 120.6 76 73.7
HanXRQChr04g0102061 Helianthus annuus HOM05D003327 ORTHO05D004535 9.7e-24 116.3 195 66.7
HanXRQChr13g0424841 Helianthus annuus HOM05D003327 ORTHO05D004535 9.7e-24 116.3 195 66.2
BcaB01g02535 Brassica carinata HOM05D003327 ORTHO05D024129 2.2e-23 115.2 209 63.6
HanXRQChr00c0158g0572131 Helianthus annuus HOM05D003327 ORTHO05D004535 2.8e-23 114.8 195 69.7
HanXRQChr04g0102071 Helianthus annuus HOM05D003327 ORTHO05D004535 3.7e-23 114.4 195 66.7
HanXRQChr13g0424861 Helianthus annuus HOM05D003327 ORTHO05D004535 3.7e-23 114.4 195 66.7
Nn2g15286 Nelumbo nucifera HOM05D003327 ORTHO05D004535 1.7e-20 105.5 176 50.6
ClCG05G006860 Citrullus lanatus HOM05D000023 ORTHO05D000014 2.1e-18 98.6 93 53.8
Ciclev10027259m.g Citrus clementina HOM05D003327 ORTHO05D024129 2.1e-18 98.6 305 28.5
HanXRQChr01g0023131 Helianthus annuus HOM05D003327 ORTHO05D004535 3.6e-18 97.8 240 55.8
RcHm_v2.0_Chr3g0494631 Rosa chinensis HOM05D003327 ORTHO05D004535 4.0e-17 94.4 263 30.4
RcHm_v2.0_Chr3g0494641 Rosa chinensis HOM05D003327 ORTHO05D024129 5.2e-17 94.0 215 31.6
BcaC01g06672 Brassica carinata HOM05D003327 ORTHO05D004535 3.7e-15 87.8 102 47.1
CsaV3_3G015510 Cucumis sativus L. HOM05D003327 ORTHO05D004535 3.1e-14 84.7 92 48.9
Rhsim05G0038800 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.2e-12 78.6 206 38.8
HanXRQChr13g0424851 Helianthus annuus HOM05D003327 ORTHO05D004535 1.6e-10 72.4 162 69.8
EL10Ac9g22810 Beta vulgaris HOM05D003327 ORTHO05D004535 2.1e-10 72.0 56 57.1
Medtr1g012160 Medicago truncatula HOM05D003327 ORTHO05D030138 5.7e-08 63.9 94 41.5
Medtr1g012210 Medicago truncatula HOM05D003327 ORTHO05D030138 5.7e-08 63.9 94 41.5
Cfa006419 Carpinus fangiana HOM05D003327 ORTHO05D014278 8.3e-07 60.1 96 39.6
SEGI_36442 Sequoiadendron giganteum HOM05D001376 ORTHO05D004383 1.8e-06 58.9 65 46.2
Medtr3g008410 Medicago truncatula HOM05D003327 ORTHO05D030138 5.4e-06 57.4 82 41.5


User provided reference genes

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