Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 4.2e-273 944.1 488 100.0
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 4.0e-191 671.8 457 76.6
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 2.0e-190 669.5 463 74.9
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 1.2e-187 660.2 449 76.2
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 3.4e-182 642.1 451 73.2
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 7.9e-179 630.9 460 71.7
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 4.8e-176 621.7 459 70.8
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 1.2e-174 617.1 462 68.8
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 7.6e-174 614.4 451 68.7
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.0e-173 611.7 459 68.8
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 6.5e-173 611.3 448 70.8
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 1.1e-172 610.5 465 69.9
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.1e-172 610.5 459 68.8
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 2.5e-172 609.4 464 70.3
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 3.2e-172 609.0 451 69.2
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 4.2e-172 608.6 462 68.2
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.2e-171 607.1 463 68.9
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 2.7e-171 605.9 452 69.7
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.5e-171 605.5 463 69.8
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.6e-171 605.1 463 69.5
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 6.1e-171 604.7 463 69.5
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.0e-170 604.0 463 69.5
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 1.3e-170 603.6 451 70.3
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.0e-170 602.4 459 67.8
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 1.9e-169 599.7 458 68.3
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 2.5e-169 599.4 458 68.1
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.3e-169 599.0 449 68.8
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 3.3e-169 599.0 458 68.1
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.6e-168 596.7 463 69.1
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 3.1e-167 592.4 455 70.5
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 1.5e-166 590.1 458 67.5
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 1.5e-166 590.1 459 67.3
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.5e-166 588.6 459 67.3
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 3.8e-165 585.5 458 67.7
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 8.5e-165 584.3 456 70.2
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 3.2e-164 582.4 476 64.7
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 3.2e-164 582.4 476 64.7
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 3.2e-164 582.4 477 66.5
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 5.5e-164 581.6 460 66.7
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 6.7e-162 574.7 465 64.1
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 8.8e-162 574.3 463 66.1
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 3.3e-161 572.4 442 69.0
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 3.3e-161 572.4 456 66.4
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 6.9e-159 564.7 462 67.3
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 6.9e-159 564.7 464 65.1
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.2e-158 563.9 460 66.5
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 1.2e-158 563.9 453 65.8
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 6.5e-157 558.1 459 63.2
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 8.5e-157 557.8 457 64.1
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 1.1e-156 557.4 458 65.1
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.1e-156 557.4 452 64.2
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 3.2e-156 555.8 461 64.2
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 3.2e-156 555.8 451 65.9
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 3.6e-155 552.4 453 65.8
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 8.8e-154 547.7 441 64.2
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 9.7e-153 544.3 441 63.7
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 1.7e-152 543.5 445 62.7
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 4.8e-152 542.0 469 61.0
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 6.3e-152 541.6 489 60.9
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 1.4e-151 540.4 441 62.8
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 4.1e-151 538.9 463 61.8
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 5.3e-151 538.5 441 63.5
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 7.0e-151 538.1 442 63.3
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 9.1e-151 537.7 439 64.2
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 2.6e-150 536.2 442 62.4
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 5.9e-150 535.0 441 62.1
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 5.9e-150 535.0 542 55.0
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.0e-149 534.3 463 62.2
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 6.5e-149 531.6 451 62.5
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 1.5e-148 530.4 456 61.2
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 1.5e-148 530.4 441 64.9
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 1.5e-148 530.4 443 62.5
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 3.2e-148 529.3 441 64.4
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 4.2e-148 528.9 491 60.9
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 2.1e-147 526.6 441 64.6
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 3.6e-147 525.8 463 62.2
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.7e-147 525.4 457 61.1
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 6.3e-144 515.0 463 61.6
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 3.1e-143 512.7 412 65.3
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 5.3e-143 511.9 461 61.0
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 4.5e-142 508.8 449 59.5
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 4.5e-142 508.8 433 63.5
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 3.8e-141 505.8 444 63.3
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 3.8e-141 505.8 428 64.7
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.1e-140 504.2 453 60.3
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 2.3e-138 496.5 448 59.6
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 3.0e-138 496.1 455 58.7
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 3.4e-137 492.7 448 58.7
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 5.7e-137 491.9 459 57.5
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 1.7e-136 490.3 457 59.1
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 2.0e-134 483.4 435 61.1
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 2.7e-131 473.0 449 55.9
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 2.7e-131 473.0 456 58.1
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 3.5e-126 456.1 358 68.4
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 1.2e-123 447.6 463 54.2
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 7.0e-119 431.8 385 60.8
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 7.8e-118 428.3 276 77.2
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 1.3e-117 427.6 459 52.9
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 2.6e-113 413.3 463 53.6
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 2.9e-112 409.8 456 47.6
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.7e-110 403.3 272 75.0
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 7.8e-110 401.7 258 77.9
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 2.3e-109 400.2 447 51.9
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 1.2e-105 387.9 454 47.6
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.0e-105 387.1 257 75.9
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 1.6e-102 377.5 340 60.6
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.5e-100 370.2 431 46.9
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.2e-99 367.9 211 84.8
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 1.2e-97 361.3 304 64.8
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.0e-97 360.5 337 61.1
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 3.8e-96 356.3 442 48.0
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 3.9e-93 346.3 325 64.0
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 2.5e-92 343.6 510 41.8
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 3.3e-84 316.6 370 50.0
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 1.4e-74 284.6 352 51.4
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 4.0e-66 256.5 315 49.5
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.5e-65 254.6 215 62.8
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 2.6e-65 253.8 316 48.4
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 1.6e-62 244.6 269 53.2
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 3.5e-62 243.4 210 62.9
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 4.5e-57 226.5 219 55.7
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 8.5e-56 222.2 422 37.2
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 4.3e-52 209.9 274 42.7
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 1.1e-50 205.3 210 52.4
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 7.7e-49 199.1 280 42.9
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 4.2e-47 193.4 145 60.0
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 2.8e-43 180.6 279 39.1
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 6.3e-43 179.5 106 83.0
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 7.7e-41 172.6 86 93.0
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 5.0e-40 169.9 106 76.4
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 2.1e-38 164.5 151 55.0
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 1.3e-32 145.2 74 89.2
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 1.2e-28 132.1 86 73.3
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.3e-27 128.6 86 66.3
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 1.7e-27 128.3 74 81.1
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 1.1e-23 115.5 282 29.1
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 2.6e-20 104.4 67 73.1
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 2.2e-19 101.3 69 76.8
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 2.8e-19 100.9 94 54.3
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 4.8e-19 100.1 186 37.6
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 7.2e-15 86.3 84 59.5
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 5.2e-13 80.1 58 67.2
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 8.8e-13 79.3 186 33.3
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.5e-12 78.6 48 72.9
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 5.0e-08 63.5 64 56.2
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.5e-07 62.0 64 51.6
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 2.1e-06 58.2 44 61.4
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 8.0e-06 56.2 35 74.3


User provided reference genes

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