Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 2.2e-161 573.9 939 100.0
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 2.6e-101 374.4 321 67.6
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 3.4e-93 347.4 340 63.2
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 6.3e-92 343.2 279 69.2
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 2.7e-90 337.8 276 67.4
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 3.8e-89 334.0 279 64.2
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 3.6e-87 327.4 277 67.1
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 4.7e-87 327.0 276 69.6
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 2.3e-86 324.7 279 64.5
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.3e-86 324.7 276 69.2
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 8.8e-86 322.8 271 72.0
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 5.7e-85 320.1 285 62.5
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.3e-84 318.9 284 70.1
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 1.7e-84 318.5 348 61.8
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 6.3e-84 316.6 284 66.2
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 8.3e-84 316.2 274 66.8
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 8.3e-84 316.2 279 65.6
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 2.4e-83 314.7 273 67.8
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 3.1e-83 314.3 337 58.8
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 2.0e-82 311.6 293 60.1
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 3.5e-82 310.8 286 60.1
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 7.7e-82 309.7 284 68.7
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 1.7e-81 308.5 338 55.0
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 3.8e-81 307.4 288 59.7
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 5.0e-81 307.0 284 60.9
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 6.6e-81 306.6 278 60.4
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 1.9e-80 305.1 337 54.3
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 2.5e-80 304.7 261 63.6
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 4.3e-80 303.9 344 52.9
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 7.3e-80 303.1 264 64.8
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 1.6e-79 302.0 265 67.5
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 2.1e-79 301.6 194 74.7
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 3.6e-79 300.8 319 56.4
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 4.7e-79 300.4 254 65.4
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 4.7e-79 300.4 254 65.4
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 4.7e-79 300.4 258 61.6
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 8.0e-79 299.7 308 58.8
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 1.8e-78 298.5 268 64.2
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.8e-78 298.5 346 60.7
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 1.8e-78 298.5 285 61.4
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 2.3e-78 298.1 345 60.9
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 2.3e-78 298.1 277 62.1
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 4.0e-78 297.4 278 68.3
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.2e-77 295.8 320 56.6
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 2.0e-77 295.0 277 58.8
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 2.6e-77 294.7 260 64.6
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 4.4e-77 293.9 260 62.3
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 7.5e-77 293.1 289 60.6
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 1.3e-76 292.4 229 70.7
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 1.7e-76 292.0 274 63.5
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 1.7e-76 292.0 237 64.1
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 3.7e-76 290.8 276 66.3
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 4.9e-76 290.4 266 63.2
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 8.3e-76 289.7 273 60.1
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 8.3e-76 289.7 273 56.8
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 1.1e-75 289.3 275 58.9
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 1.8e-75 288.5 255 62.7
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 4.1e-75 287.3 276 59.4
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 4.1e-75 287.3 271 60.1
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 5.4e-75 287.0 291 61.5
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 7.0e-75 286.6 253 67.2
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 1.6e-74 285.4 262 56.1
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 2.0e-74 285.0 276 64.1
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 2.7e-74 284.6 237 66.2
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 2.7e-74 284.6 237 66.2
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 3.9e-73 280.8 260 63.5
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.1e-72 279.3 248 62.9
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 1.9e-72 278.5 276 57.2
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 3.3e-72 277.7 261 59.8
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 5.6e-72 276.9 274 59.5
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 1.2e-71 275.8 290 57.6
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 2.8e-71 274.6 274 61.7
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.4e-70 272.3 250 58.0
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 1.2e-69 269.2 266 54.5
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 9.8e-69 266.2 334 53.0
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 3.7e-68 264.2 273 56.8
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 3.2e-67 261.2 281 55.5
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 5.4e-67 260.4 278 54.3
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 1.2e-66 259.2 337 51.6
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 4.6e-66 257.3 339 51.9
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 6.0e-66 256.9 290 53.1
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 7.8e-66 256.5 266 54.9
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 2.5e-64 251.5 342 49.4
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 4.3e-64 250.8 228 61.0
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 9.5e-64 249.6 324 51.9
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 3.6e-63 247.7 236 63.1
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 1.1e-62 246.1 343 48.4
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 1.8e-62 245.4 341 51.0
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 2.3e-62 245.0 319 53.3
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 3.1e-62 244.6 319 56.7
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 4.9e-60 237.3 292 56.8
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 5.4e-59 233.8 239 51.0
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 4.3e-56 224.2 136 80.9
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 5.6e-56 223.8 184 58.7
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 1.6e-55 222.2 146 73.3
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 1.1e-54 219.5 184 58.2
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 1.2e-53 216.1 136 76.5
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 1.2e-53 216.1 185 60.5
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.4e-51 209.1 167 61.1
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 4.9e-44 184.1 119 74.8
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 4.9e-44 184.1 140 62.9
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 8.7e-41 173.3 178 46.6
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 1.3e-39 169.5 120 70.0
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 8.1e-39 166.8 178 44.9
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 1.2e-37 162.9 111 74.8
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 5.4e-35 154.1 177 45.8
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 8.7e-33 146.7 83 84.3
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 1.1e-32 146.4 178 45.5
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 4.3e-32 144.4 178 45.5
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 9.6e-32 143.3 96 72.9
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 6.2e-31 140.6 98 70.4
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 8.1e-31 140.2 101 68.3
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 1.8e-30 139.0 88 73.9
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.8e-30 139.0 114 62.3
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 1.8e-30 139.0 124 62.1
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 5.3e-30 137.5 109 64.2
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.2e-29 136.3 110 64.5
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 7.6e-29 133.7 111 62.2
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 2.4e-27 128.6 109 58.7
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 4.2e-27 127.9 91 67.0
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.6e-26 125.9 179 38.0
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.1e-26 125.6 109 60.6
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 4.6e-26 124.4 102 62.7
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 5.1e-25 120.9 182 38.5
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.9e-24 119.0 73 76.7
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 4.3e-24 117.9 119 54.6
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.1e-22 113.2 76 68.4
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.7e-20 105.9 70 72.9
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.7e-20 105.9 89 55.1
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 1.3e-17 96.3 58 74.1
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.5e-13 81.3 80 55.0
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 3.8e-12 78.2 63 60.3
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 2.5e-11 75.5 85 51.8
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 3.2e-11 75.1 148 31.1
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 1.6e-10 72.8 35 97.1


User provided reference genes

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