Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p037730 Quercus lobata HOM05D003387 ORTHO05D005400 4.9e-117 424.5 213 100.0
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 4.9e-117 424.5 213 100.0
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 3.4e-110 401.7 213 93.4
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 1.4e-108 396.4 213 91.1
Haze_17786 Corylus avellana HOM05D003387 ORTHO05D005400 1.9e-108 396.0 213 92.0
Atru.chr13.2064 Acer truncatum HOM05D003387 ORTHO05D005400 4.2e-108 394.8 213 90.1
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 7.1e-108 394.0 213 90.1
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 9.3e-108 393.7 213 91.1
Duzib116G0668 Durio zibethinus HOM05D003387 ORTHO05D005400 1.6e-107 392.9 213 91.1
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 1.6e-107 392.9 213 91.1
Manes.02G181600 Manihot esculenta HOM05D003387 ORTHO05D005400 2.1e-107 392.5 213 91.1
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 4.6e-107 391.3 213 90.6
Cpa.g.sc49.99 Carica papaya HOM05D003387 ORTHO05D005400 1.0e-106 390.2 208 92.8
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 1.0e-106 390.2 213 90.6
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 1.0e-106 390.2 213 90.6
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 1.3e-106 389.8 213 89.2
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 3.0e-106 388.7 213 89.7
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 3.9e-106 388.3 213 90.1
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 3.9e-106 388.3 213 90.1
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 3.9e-106 388.3 213 89.7
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 6.6e-106 387.5 213 89.7
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 8.7e-106 387.1 213 89.7
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 1.1e-105 386.7 213 89.7
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 1.1e-105 386.7 213 89.2
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 1.9e-105 386.0 213 89.7
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 1.9e-105 386.0 213 89.7
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 3.3e-105 385.2 213 89.2
COL.COLO4_03566 Corchorus olitorius HOM05D003387 ORTHO05D005400 5.6e-105 384.4 213 88.3
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 5.6e-105 384.4 213 88.7
FAN27G0365 Fragaria x ananassa HOM05D003387 ORTHO05D005400 5.6e-105 384.4 213 89.7
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 1.3e-104 383.3 213 86.9
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 1.3e-104 383.3 213 88.3
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.3e-104 383.3 213 89.2
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 2.1e-104 382.5 213 87.8
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 2.1e-104 382.5 213 87.8
SGA_v2.0_scaffold274G46519 Striga asiatica HOM05D003387 ORTHO05D005400 2.1e-104 382.5 213 86.9
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 2.1e-104 382.5 213 88.3
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 2.8e-104 382.1 213 87.3
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 2.8e-104 382.1 213 88.7
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 4.8e-104 381.3 211 89.1
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 4.8e-104 381.3 213 87.8
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 4.8e-104 381.3 213 87.8
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 8.1e-104 380.6 213 88.3
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 1.4e-103 379.8 213 86.9
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 1.4e-103 379.8 213 87.8
Sabra05G0148200 Salix brachista HOM05D003387 ORTHO05D005400 1.4e-103 379.8 213 87.3
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 2.4e-103 379.0 213 86.9
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 2.4e-103 379.0 213 86.4
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 4.0e-103 378.3 213 87.3
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 5.3e-103 377.9 213 86.4
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 5.3e-103 377.9 213 86.4
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 9.0e-103 377.1 213 86.4
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 1.2e-102 376.7 213 86.9
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.5e-102 376.3 213 86.4
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 2.0e-102 375.9 211 88.2
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 2.0e-102 375.9 213 86.9
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 2.0e-102 375.9 213 85.4
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 2.6e-102 375.6 213 84.5
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 2.6e-102 375.6 213 85.9
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 2.6e-102 375.6 213 87.3
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 4.4e-102 374.8 213 85.0
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 4.4e-102 374.8 213 84.5
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 5.8e-102 374.4 213 85.4
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 7.6e-102 374.0 213 85.4
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 9.9e-102 373.6 213 85.0
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 9.9e-102 373.6 213 85.9
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 1.3e-101 373.2 213 84.0
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 1.3e-101 373.2 213 84.0
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 1.3e-101 373.2 213 84.0
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 1.3e-101 373.2 213 85.0
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 1.3e-101 373.2 209 87.1
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 2.2e-101 372.5 213 84.0
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 2.9e-101 372.1 213 85.4
Nitab4.5_0002445g0040 Nicotiana tabacum HOM05D003387 ORTHO05D005400 2.9e-101 372.1 213 86.4
Lalb_Chr19g0130191 Lupinus albus HOM05D003387 ORTHO05D005400 3.8e-101 371.7 213 85.4
Sed0013690 Sechium edule HOM05D003387 ORTHO05D005400 3.8e-101 371.7 213 84.0
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 4.9e-101 371.3 213 85.9
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 6.4e-101 370.9 213 83.1
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 6.4e-101 370.9 213 85.4
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 8.4e-101 370.5 213 85.0
Nitab4.5_0010347g0020 Nicotiana tabacum HOM05D003387 ORTHO05D005400 8.4e-101 370.5 213 85.0
Actinidia29542 Actinidia chinensis HOM05D003387 ORTHO05D005400 1.4e-100 369.8 213 86.4
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 1.4e-100 369.8 213 83.6
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 1.4e-100 369.8 213 83.6
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 1.4e-100 369.8 213 83.6
QL06p031240 Quercus lobata HOM05D003387 ORTHO05D005400 2.4e-100 369.0 215 84.7
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 3.2e-100 368.6 213 85.0
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 4.2e-100 368.2 213 85.0
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 5.4e-100 367.9 213 83.1
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 7.1e-100 367.5 213 83.6
PSO170G1597 Papaver somniferum HOM05D003387 ORTHO05D005400 9.3e-100 367.1 213 84.5
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 1.2e-99 366.7 211 84.8
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 1.6e-99 366.3 213 84.0
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 1.6e-99 366.3 213 84.0
Ca_04511_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 2.1e-99 365.9 213 84.5
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 2.1e-99 365.9 213 83.6
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 2.1e-99 365.9 213 83.6
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 3.5e-99 365.2 238 79.0
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 6.0e-99 364.4 213 82.6
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 7.9e-99 364.0 218 84.9
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 1.3e-98 363.2 213 83.1
EL10Ac1g01585 Beta vulgaris HOM05D003387 ORTHO05D005400 2.3e-98 362.5 213 83.6
AUR62026677 Chenopodium quinoa HOM05D003387 ORTHO05D005400 3.0e-98 362.1 213 82.6
AUR62040585 Chenopodium quinoa HOM05D003387 ORTHO05D005400 3.9e-98 361.7 213 82.6
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 1.5e-97 359.8 213 80.8
MBI16_g07738_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D005400 3.3e-97 358.6 213 82.6
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 4.3e-97 358.2 209 83.3
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 9.6e-97 357.1 212 82.5
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 1.6e-96 356.3 201 86.1
Solyc12g019750.3 Solanum lycopersicum HOM05D003387 ORTHO05D005400 1.6e-96 356.3 213 82.2
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 1.6e-96 356.3 213 82.2
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 2.1e-96 355.9 213 81.2
arahy.Tifrunner.gnm1.ann1.BQ9MTK Arachis hypogaea HOM05D003387 ORTHO05D005400 4.8e-96 354.8 223 80.3
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 6.2e-96 354.4 213 80.8
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 8.1e-96 354.0 213 81.2
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.4e-95 353.2 222 79.7
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 1.8e-95 352.8 213 79.8
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 3.1e-95 352.1 213 80.3
TPR.G28008 Trifolium pratense HOM05D003387 ORTHO05D005400 4.0e-95 351.7 213 78.9
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 9.0e-95 350.5 213 81.7
ATR1126G056 Amborella trichopoda HOM05D003387 ORTHO05D005400 3.4e-94 348.6 213 77.5
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 4.5e-94 348.2 215 79.1
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 7.6e-94 347.4 204 85.3
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 1.3e-93 346.7 213 79.8
CDE08G0132 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 8.4e-93 344.0 213 77.9
ATR0115G003 Amborella trichopoda HOM05D003387 ORTHO05D005400 1.4e-92 343.2 213 76.5
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 1.4e-92 343.2 211 78.2
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 1.6e-91 339.7 209 78.5
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 1.8e-90 336.3 213 76.5
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.1e-89 333.6 207 79.2
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 7.4e-89 330.9 212 77.4
AUR62003637 Chenopodium quinoa HOM05D003387 ORTHO05D005400 8.1e-88 327.4 206 77.2
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 8.1e-88 327.4 222 76.1
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 5.3e-87 324.7 213 72.3
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 2.6e-86 322.4 198 78.3
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 7.6e-86 320.9 213 69.5
SEGI_27673 Sequoiadendron giganteum HOM05D003387 ORTHO05D005400 1.7e-85 319.7 212 72.6
Os05g0437300 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 8.4e-85 317.4 213 69.0
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 3.0e-82 308.9 213 69.5
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 2.8e-80 302.4 213 69.0
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 2.4e-79 299.3 215 69.3
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 2.4e-79 299.3 213 69.5
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 4.1e-79 298.5 201 70.1
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 6.9e-79 297.7 213 67.6
HPP92_001090 Vanilla planifolia HOM05D003387 ORTHO05D005400 1.6e-75 286.6 213 65.3
arahy.Tifrunner.gnm1.ann1.NR2FSQ Arachis hypogaea HOM05D003387 ORTHO05D005400 1.5e-73 280.0 184 75.5
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 1.6e-72 276.6 211 62.6
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 5.5e-68 261.5 213 66.2
Nitab4.5_0003909g0020 Nicotiana tabacum HOM05D003387 ORTHO05D005400 8.8e-66 254.2 213 63.8
Peaxi162Scf00249g00068 Petunia axillaris HOM05D003387 ORTHO05D031551 1.5e-62 243.4 210 63.8
Medtr6g037540 Medicago truncatula HOM05D003387 ORTHO05D030081 4.1e-47 192.2 127 74.0
SMO146G0120 Selaginella moellendorffii HOM05D003387 ORTHO05D002201 2.7e-43 179.5 201 47.3
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 3.8e-37 159.1 84 91.7
Mapoly0051s0071 Marchantia polymorpha HOM05D003387 ORTHO05D255399 1.2e-35 154.1 176 44.9
TPR.G28006 Trifolium pratense HOM05D003387 ORTHO05D030081 1.4e-34 150.6 98 74.5
arahy.Tifrunner.gnm1.ann1.M2ZNIJ Arachis hypogaea HOM05D003387 ORTHO05D031551 1.8e-34 150.2 78 89.7
MD00G1066300 Malus domestica HOM05D003387 ORTHO05D005400 4.0e-34 149.1 84 85.7
SMO171G0107 Selaginella moellendorffii HOM05D003387 ORTHO05D002201 4.0e-34 149.1 197 44.7
Medtr6g037550 Medicago truncatula HOM05D003387 ORTHO05D005400 3.4e-33 146.0 84 81.0
Medtr6g037510 Medicago truncatula HOM05D003387 ORTHO05D031551 1.7e-32 143.7 89 76.4
MD00G1066200 Malus domestica HOM05D003387 ORTHO05D030081 6.3e-32 141.7 78 83.3
SMO171G0059 Selaginella moellendorffii HOM05D003387 ORTHO05D376012 4.7e-27 125.6 203 40.4
Medtr8g072130 Medicago truncatula HOM05D003387 ORTHO05D030081 4.0e-26 122.5 121 54.5
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 1.1e-20 104.4 50 98.0
Carub.0001s4466 Capsella rubella HOM05D003387 ORTHO05D114561 2.1e-19 100.1 80 66.2
Medtr6g037520 Medicago truncatula HOM05D003387 ORTHO05D257462 3.0e-13 79.7 52 65.4
Actinidia10635 Actinidia chinensis HOM05D003387 ORTHO05D005400 1.8e-10 70.5 36 91.7
Nn6g35013 Nelumbo nucifera HOM05D003387 ORTHO05D005400 2.3e-10 70.1 42 78.6
SMO196G0024 Selaginella moellendorffii HOM05D003387 ORTHO05D375944 5.8e-09 65.5 111 36.9
AUR62017947 Chenopodium quinoa HOM05D003387 ORTHO05D138110 5.4e-07 58.9 36 75.0
Potri.017G085400 Populus trichocarpa HOM05D000974 ORTHO05D002201 4.6e-06 55.8 96 36.5


User provided reference genes

Program Settings