Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 2.4e-303 1044.6 521 100.0
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 2.0e-281 971.8 598 84.6
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 5.3e-266 920.6 521 88.1
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 1.5e-265 919.1 526 88.0
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 2.0e-260 902.1 546 83.5
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 2.6e-257 891.7 524 84.5
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 1.0e-256 889.8 524 84.7
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 1.0e-256 889.8 521 85.6
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 1.3e-256 889.4 522 85.6
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 1.1e-255 886.3 524 83.6
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 4.7e-254 880.9 521 84.3
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 8.2e-251 870.2 521 83.5
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 1.4e-250 869.4 521 83.5
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 3.1e-250 868.2 521 82.7
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.1e-250 868.2 521 82.7
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 4.1e-250 867.8 521 82.5
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 3.5e-249 864.8 524 82.8
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 4.5e-249 864.4 524 83.2
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.3e-248 862.8 521 82.5
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 1.3e-248 862.8 521 82.7
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 2.9e-248 861.7 523 81.8
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 3.8e-248 861.3 529 82.2
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 3.8e-248 861.3 525 82.1
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 5.0e-248 860.9 521 82.1
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 1.1e-247 859.8 521 83.5
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 1.9e-247 859.0 524 82.6
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 1.9e-247 859.0 521 82.7
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 1.9e-247 859.0 522 81.6
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 3.2e-247 858.2 520 82.7
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 1.2e-246 856.3 522 82.4
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 2.1e-246 855.5 524 80.2
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 2.1e-246 855.5 521 82.9
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 2.7e-246 855.1 525 81.1
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 2.7e-246 855.1 521 81.8
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 3.6e-246 854.7 521 81.8
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 6.1e-246 854.0 524 80.0
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 1.0e-245 853.2 521 82.9
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 1.0e-245 853.2 524 81.3
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 1.8e-245 852.4 520 81.3
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 3.0e-245 851.7 523 80.9
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 3.0e-245 851.7 521 81.6
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.0e-244 849.0 525 80.6
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 2.6e-244 848.6 523 79.9
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 3.4e-244 848.2 525 80.8
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 7.5e-244 847.0 523 81.5
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.3e-243 846.3 524 79.0
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 2.8e-243 845.1 524 79.4
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 3.7e-243 844.7 521 81.6
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 3.7e-243 844.7 524 80.7
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 4.8e-243 844.3 520 81.5
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 1.4e-242 842.8 524 80.3
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 5.4e-242 840.9 524 79.2
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 5.4e-242 840.9 521 81.2
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 2.5e-239 832.0 522 81.4
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 2.5e-239 832.0 570 75.4
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 3.3e-239 831.6 521 80.2
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 7.2e-239 830.5 521 79.8
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 1.2e-238 829.7 523 79.7
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 8.9e-237 823.5 505 82.4
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 8.9e-237 823.5 524 78.1
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 3.4e-236 821.6 522 79.1
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 4.9e-235 817.8 526 76.8
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 6.3e-235 817.4 526 77.0
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 1.1e-234 816.6 528 77.1
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 7.0e-234 813.9 523 78.6
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 7.0e-234 813.9 521 77.4
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 9.2e-234 813.5 523 78.6
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 1.2e-233 813.1 521 78.3
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 1.2e-233 813.1 521 75.6
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 1.2e-233 813.1 552 76.3
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 4.5e-233 811.2 522 76.4
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 4.5e-233 811.2 612 68.5
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.8e-232 808.1 520 76.2
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 1.1e-231 806.6 530 75.8
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.5e-231 805.4 528 78.0
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 4.3e-231 804.7 525 78.7
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 4.7e-230 801.2 495 78.8
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 8.0e-230 800.4 527 76.3
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 1.4e-229 799.7 526 75.3
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.8e-229 799.3 498 79.9
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 3.1e-229 798.5 524 76.0
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 4.0e-229 798.1 497 78.9
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 5.2e-229 797.7 525 75.0
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 6.8e-229 797.3 540 74.4
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 8.9e-229 797.0 525 75.0
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 3.2e-226 788.5 526 75.7
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 9.2e-226 786.9 524 75.0
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 2.0e-225 785.8 519 74.2
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 7.8e-225 783.9 536 73.7
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 7.8e-225 783.9 533 73.9
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 1.3e-224 783.1 518 75.7
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 5.0e-224 781.2 521 76.2
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 5.0e-224 781.2 521 76.2
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 4.3e-223 778.1 531 73.8
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 5.6e-223 777.7 532 74.2
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 5.6e-223 777.7 532 74.2
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 7.3e-223 777.3 531 74.2
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 7.5e-220 767.3 542 72.0
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 1.7e-219 766.1 520 72.5
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 2.2e-219 765.8 543 71.8
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 2.2e-219 765.8 525 73.5
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 1.1e-218 763.5 525 72.6
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 1.2e-217 760.0 537 71.7
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 2.7e-217 758.8 525 72.0
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 1.2e-214 750.0 531 70.6
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 2.1e-214 749.2 520 72.9
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 2.9e-211 738.8 523 71.3
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 4.9e-211 738.0 521 70.2
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 7.8e-209 730.7 523 71.3
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 2.8e-206 722.2 520 68.8
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 6.2e-206 721.1 521 67.8
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 5.2e-205 718.0 520 68.7
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 6.6e-200 701.0 460 76.5
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 5.6e-191 671.4 526 64.4
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 3.6e-190 668.7 496 67.9
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 4.8e-190 668.3 545 63.7
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 1.7e-187 659.8 389 83.3
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.7e-176 621.3 349 86.8
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 1.1e-170 604.0 349 83.4
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 2.1e-169 599.7 541 56.0
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 4.6e-169 598.6 537 55.7
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.3e-167 592.0 351 82.1
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 6.5e-163 578.2 536 54.9
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 4.1e-149 532.3 410 63.4
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 4.5e-148 528.9 351 72.4
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 1.4e-128 464.2 520 50.4
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 2.3e-128 463.4 402 63.2
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 6.8e-120 435.3 383 55.6
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.2e-108 397.9 234 82.5
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 1.1e-104 384.8 279 68.1
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 6.8e-104 382.1 233 81.1
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 3.4e-103 379.8 249 74.7
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 1.3e-94 351.3 231 73.2
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 7.1e-93 345.5 253 66.4
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 7.1e-93 345.5 253 66.4
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.8e-88 330.9 561 35.8
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 1.1e-85 321.6 286 60.5
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 3.4e-79 300.1 529 37.6
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 7.9e-76 288.9 448 37.9
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 1.6e-68 264.6 161 78.9
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.1e-56 223.8 242 54.5
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 1.6e-52 211.5 394 34.5
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.3e-51 207.6 174 52.3
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 1.1e-48 198.7 149 62.4
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 1.1e-48 198.7 149 62.4
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 2.9e-46 190.7 139 64.0
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.7e-44 184.1 118 72.9
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.0e-43 182.2 169 54.4
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 1.2e-39 168.7 99 79.8
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 5.5e-37 159.8 120 70.8
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 6.1e-36 156.4 402 27.9
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 5.1e-35 153.3 111 68.5
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 1.8e-32 144.8 88 80.7
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 2.4e-32 144.4 147 51.0
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 5.3e-32 143.3 94 76.6
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 4.2e-29 133.7 119 57.1
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 6.7e-27 126.3 113 54.0
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 2.2e-25 121.3 124 51.6
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 7.0e-24 116.3 130 53.1
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 1.8e-19 101.7 267 27.0
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 1.6e-15 88.6 82 56.1
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 2.7e-15 87.8 130 44.6
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 2.8e-09 67.8 84 45.2


User provided reference genes

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