Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p002563 Quercus lobata HOM05D004922 ORTHO05D005990 8.8e-119 430.3 211 100.0
QL05p050238 Quercus lobata HOM05D000817 ORTHO05D000702 5.0e-13 79.0 40 85.0
DCAR_000537 Daucus carota HOM05D004922 ORTHO05D005990 1.3e-08 64.3 69 47.8
Eucgr.H03678 Eucalyptus grandis HOM05D004922 ORTHO05D005990 1.7e-08 63.9 34 88.2
TPR.G35576 Trifolium pratense HOM05D004922 ORTHO05D005990 2.8e-08 63.2 36 83.3
EL10Ac4g08876 Beta vulgaris HOM05D004922 ORTHO05D005990 3.7e-08 62.8 34 88.2
AUR62033984 Chenopodium quinoa HOM05D004922 ORTHO05D005990 3.7e-08 62.8 34 88.2
PGR044G2430 Punica granatum HOM05D004922 ORTHO05D005990 3.7e-08 62.8 34 88.2
Atru.chr8.785 Acer truncatum HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
arahy.Tifrunner.gnm1.ann1.AXK6HV Arachis hypogaea HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
arahy.Tifrunner.gnm1.ann1.N94L43 Arachis hypogaea HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Ca_18278_v3 Cicer arietinum L. HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Ciclev10022785m.g Citrus clementina HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
COL.COLO4_37469 Corchorus olitorius HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Haze_24774 Corylus avellana HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
MELO3C018062.2 Cucumis melo HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
CsaV3_3G028790 Cucumis sativus L. HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Dinv04668 Davidia involucrata HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Dinv19219 Davidia involucrata HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Duzib133G0821 Durio zibethinus HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Duzib138G1451 Durio zibethinus HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
FvH4_1g24390 Fragaria vesca HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 85.3
FAN19G2048 Fragaria x ananassa HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 85.3
FAN23G2197 Fragaria x ananassa HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 85.3
FAN28G0422 Fragaria x ananassa HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 85.3
Gohir.A11G136000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Hma1.2p1_1061F.1_g253320 Hydrangea macrophylla HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Lj4g0004779 Lotus japonicus HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Lalb_Chr07g0188871 Lupinus albus HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Lalb_Chr13g0291421 Lupinus albus HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Manes.12G042100 Manihot esculenta HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Manes.13G044200 Manihot esculenta HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Medtr4g094600 Medicago truncatula HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Psat7g092040 Pisum sativum HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Potri.001G277900 Populus trichocarpa HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Potri.009G072500 Populus trichocarpa HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
QL09p007931 Quercus lobata HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
QL09p044611 Quercus lobata HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Sabra16G0171900 Salix brachista HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Sed0006654 Sechium edule HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
Thecc.01G228800 Theobroma cacao HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
TPR.G4933 Trifolium pratense HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
TWI09G0408 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
TWI59G0402 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
TAR365G0710 Trochodendron aralioides HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
TAR636G3017 Trochodendron aralioides HOM05D004922 ORTHO05D005990 4.8e-08 62.4 34 88.2
ClCG07G001790 Citrullus lanatus HOM05D004922 ORTHO05D005990 6.3e-08 62.0 34 85.3
PSO210G2196 Papaver somniferum HOM05D004922 ORTHO05D005990 6.3e-08 62.0 34 85.3
PSO591G0020 Papaver somniferum HOM05D004922 ORTHO05D005990 6.3e-08 62.0 34 85.3
PSO832G2289 Papaver somniferum HOM05D004922 ORTHO05D005990 6.3e-08 62.0 34 85.3
Sed0024440 Sechium edule HOM05D004922 ORTHO05D005990 6.3e-08 62.0 34 85.3
TPR.G1594 Trifolium pratense HOM05D004922 ORTHO05D005990 6.3e-08 62.0 34 85.3
Migut.N00343 Erythranthe guttata HOM05D004922 ORTHO05D005990 8.3e-08 61.6 34 85.3
Phvul.001G007400 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 8.3e-08 61.6 34 85.3
Sc05g0002390 Simmondsia chinensis HOM05D004922 ORTHO05D005990 8.3e-08 61.6 34 85.3
Actinidia35950 Actinidia chinensis HOM05D004922 ORTHO05D005990 1.1e-07 61.2 34 85.3
CSS0022478 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 1.1e-07 61.2 34 85.3
CSS0038803 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 1.1e-07 61.2 34 85.3
CiPaw.03G151500 Carya illinoinensis HOM05D004922 ORTHO05D005990 1.1e-07 61.2 34 85.3
CDE02G4734 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 1.1e-07 61.2 34 85.3
Cc01_g17260 Coffea canephora HOM05D004922 ORTHO05D005990 1.1e-07 61.2 34 85.3
Glyma.05G127900 Glycine max HOM05D004922 ORTHO05D005990 1.1e-07 61.2 34 85.3
HanXRQChr10g0287281 Helianthus annuus HOM05D004922 ORTHO05D005990 1.1e-07 61.2 34 85.3
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.1e-07 61.2 34 85.3
RcHm_v2.0_Chr2g0121221 Rosa chinensis HOM05D004922 ORTHO05D005990 1.1e-07 61.2 34 85.3
SalBow3G3780 Salvia bowleyana HOM05D004922 ORTHO05D005990 1.1e-07 61.2 34 85.3
HPP92_006337 Vanilla planifolia HOM05D004922 ORTHO05D005990 1.1e-07 61.2 32 90.6
HPP92_027867 Vanilla planifolia HOM05D004922 ORTHO05D005990 1.1e-07 61.2 32 90.6
GSVIVG01029076001 Vitis vinifera HOM05D004922 ORTHO05D005990 1.1e-07 61.2 34 85.3
CANSAT01G0689 Cannabis sativa HOM05D004922 ORTHO05D005990 1.4e-07 60.8 34 85.3
CANSAT01G1757 Cannabis sativa HOM05D004922 ORTHO05D005990 1.4e-07 60.8 34 85.3
Gohir.A07G155600 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.4e-07 60.8 34 85.3
Gohir.D07G162000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.4e-07 60.8 34 85.3
Gohir.D11G142400 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.4e-07 60.8 34 85.3
Gorai.007G152700 Gossypium raimondii HOM05D004922 ORTHO05D005990 1.4e-07 60.8 34 85.3
Nn7g37520 Nelumbo nucifera HOM05D004922 ORTHO05D005990 1.4e-07 60.8 34 85.3
Aqoxy1G00374 Aquilegia oxysepala HOM05D004922 ORTHO05D005990 1.8e-07 60.5 34 82.4
ECA236G1627 Erigeron canadensis HOM05D004922 ORTHO05D005990 1.8e-07 60.5 34 85.3
HanXRQChr04g0110651 Helianthus annuus HOM05D004922 ORTHO05D005990 1.8e-07 60.5 34 85.3
Lsat_1_v5_gn_8_90161 Lactuca sativa HOM05D004922 ORTHO05D005990 1.8e-07 60.5 34 85.3
MD10G1167200 Malus domestica HOM05D004922 ORTHO05D005990 1.8e-07 60.5 34 82.4
THA.LOC104818942 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 1.8e-07 60.5 34 82.4
THA.LOC104827350 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 1.8e-07 60.5 34 82.4
unitig_22.g5302 Utricularia gibba HOM05D004922 ORTHO05D005990 1.8e-07 60.5 34 82.4
Migut.D00519 Erythranthe guttata HOM05D004922 ORTHO05D005990 2.4e-07 60.1 34 82.4
Thhalv10005202m.g Eutrema salsugineum HOM05D004922 ORTHO05D005990 2.4e-07 60.1 34 82.4
Phvul.002G196500 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 2.4e-07 60.1 34 82.4
Ah.06g191400 Amaranthus hybridus HOM05D004922 ORTHO05D005990 3.1e-07 59.7 34 82.4
Gorai.001G185300 Gossypium raimondii HOM05D004922 ORTHO05D005990 3.1e-07 59.7 32 87.5
MD05G1178700 Malus domestica HOM05D004922 ORTHO05D005990 3.1e-07 59.7 34 82.4
AL8G22040 Arabidopsis lyrata HOM05D004922 ORTHO05D005990 4.1e-07 59.3 32 84.4
AT5G48870 Arabidopsis thaliana HOM05D004922 ORTHO05D005990 4.1e-07 59.3 32 84.4
Carub.0008s0859 Capsella rubella HOM05D004922 ORTHO05D005990 4.1e-07 59.3 32 84.4
Sp2g19260 Schrenkiella parvula HOM05D004922 ORTHO05D005990 4.1e-07 59.3 32 84.4
Prupe.8G205100 Prunus persica HOM05D004922 ORTHO05D005990 5.4e-07 58.9 34 82.4
Lalb_Chr11g0067741 Lupinus albus HOM05D004922 ORTHO05D005990 7.0e-07 58.5 34 79.4
Peaxi162Scf00122g00811 Petunia axillaris HOM05D004922 ORTHO05D005990 7.0e-07 58.5 32 84.4
CAN.G500.78 Capsicum annuum HOM05D004922 ORTHO05D005990 1.2e-06 57.8 31 87.1
CARHR182850 Cardamine hirsuta HOM05D004922 ORTHO05D005990 1.2e-06 57.8 32 81.2
Nitab4.5_0003904g0020 Nicotiana tabacum HOM05D004922 ORTHO05D005990 1.2e-06 57.8 34 76.5
Solyc09g091500.3 Solanum lycopersicum HOM05D004922 ORTHO05D005990 1.2e-06 57.8 31 87.1
Sopen09g034430 Solanum pennellii HOM05D004922 ORTHO05D005990 1.2e-06 57.8 31 87.1
PGSC0003DMG400029651 Solanum tuberosum HOM05D004922 ORTHO05D005990 1.2e-06 57.8 31 87.1
CSS0043203 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 1.6e-06 57.4 34 82.4
Os05g0389300 Oryza sativa ssp. japonica HOM05D004922 ORTHO05D005990 2.0e-06 57.0 31 87.1
SEGI_22867 Sequoiadendron giganteum HOM05D004922 ORTHO05D005990 2.0e-06 57.0 32 81.2
Zm00001eb287110 Zea mays HOM05D004922 ORTHO05D005990 2.0e-06 57.0 31 87.1
Zm00001eb350780 Zea mays HOM05D004922 ORTHO05D005990 2.0e-06 57.0 31 87.1
AagrBONN_evm.TU.Sc2ySwM_228.5635 Anthoceros agrestis HOM05D004922 ORTHO05D005990 2.7e-06 56.6 32 81.2
Mapoly0016s0054 Marchantia polymorpha HOM05D004922 ORTHO05D005990 3.5e-06 56.2 32 81.2
BcaB07g30046 Brassica carinata HOM05D004922 ORTHO05D005990 4.5e-06 55.8 32 78.1
BcaC03g17679 Brassica carinata HOM05D004922 ORTHO05D005990 4.5e-06 55.8 32 78.1
BcaC04g23758 Brassica carinata HOM05D004922 ORTHO05D005990 4.5e-06 55.8 32 78.1
A02p37760 Brassica napus HOM05D004922 ORTHO05D005990 4.5e-06 55.8 32 78.1
A09p04660 Brassica napus HOM05D004922 ORTHO05D005990 4.5e-06 55.8 32 78.1
C02p56860 Brassica napus HOM05D004922 ORTHO05D005990 4.5e-06 55.8 32 78.1
C09p04970 Brassica napus HOM05D004922 ORTHO05D005990 4.5e-06 55.8 32 78.1
BolC2t11755H Brassica oleracea HOM05D004922 ORTHO05D005990 4.5e-06 55.8 32 78.1
BolC9t53426H Brassica oleracea HOM05D004922 ORTHO05D005990 4.5e-06 55.8 32 78.1
BraA02t08759Z Brassica rapa HOM05D004922 ORTHO05D005990 4.5e-06 55.8 32 78.1
BraA09t36102Z Brassica rapa HOM05D004922 ORTHO05D005990 4.5e-06 55.8 32 78.1
Pp3c1_36020 Physcomitrium patens HOM05D004922 ORTHO05D005990 5.9e-06 55.5 32 78.1
CARHR182860 Cardamine hirsuta HOM05D004922 ORTHO05D005990 7.7e-06 55.1 32 81.2
QL04p064939 Quercus lobata HOM05D006473 ORTHO05D008108 7.7e-06 55.1 39 76.9


User provided reference genes

Program Settings