Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 3.5e-132 474.9 235 100.0
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 6.5e-70 268.1 142 93.7
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 5.5e-69 265.0 142 91.5
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 8.7e-67 257.7 142 89.4
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 1.1e-64 250.8 142 83.8
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 2.4e-64 249.6 142 85.9
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 4.1e-64 248.8 142 85.2
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 4.5e-63 245.4 142 84.5
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.9e-61 240.0 142 82.4
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.2e-60 237.3 142 81.0
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 6.1e-60 235.0 142 80.3
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 1.0e-59 234.2 141 79.4
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 1.0e-59 234.2 142 81.7
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.4e-59 233.8 142 80.3
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.4e-59 233.8 142 80.3
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 1.1e-58 230.7 142 77.5
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.0e-58 229.9 141 77.3
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 2.0e-58 229.9 155 71.6
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 3.3e-58 229.2 142 77.5
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 3.3e-58 229.2 141 76.6
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 4.3e-58 228.8 142 76.8
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 7.4e-58 228.0 141 75.2
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 7.4e-58 228.0 141 75.2
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 7.4e-58 228.0 141 75.2
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.7e-57 226.9 141 75.9
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 3.7e-57 225.7 142 75.4
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 3.7e-57 225.7 142 74.6
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 3.7e-57 225.7 141 75.9
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 3.7e-57 225.7 141 74.5
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.7e-57 225.7 141 74.5
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.7e-57 225.7 141 74.5
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.7e-57 225.7 141 74.5
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.7e-57 225.7 141 74.5
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 3.7e-57 225.7 156 73.1
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 4.8e-57 225.3 142 75.4
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 6.3e-57 224.9 142 75.4
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.1e-56 224.2 142 74.6
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.4e-56 223.8 144 74.3
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 1.4e-56 223.8 142 73.9
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 1.4e-56 223.8 142 73.9
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.8e-56 223.4 144 74.3
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.8e-56 223.4 142 74.6
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 2.4e-56 223.0 147 70.1
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 3.1e-56 222.6 141 73.0
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 3.1e-56 222.6 141 73.0
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 4.1e-56 222.2 142 73.2
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.3e-56 221.9 142 74.6
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 6.9e-56 221.5 142 74.6
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 6.9e-56 221.5 139 75.5
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.5e-55 220.3 142 74.6
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 1.5e-55 220.3 142 74.6
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 2.0e-55 219.9 142 73.2
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 2.6e-55 219.5 139 74.8
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 3.4e-55 219.2 139 74.8
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 4.5e-55 218.8 139 74.8
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 5.9e-55 218.4 142 74.6
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 5.9e-55 218.4 142 78.2
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 7.7e-55 218.0 142 75.4
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 1.0e-54 217.6 142 73.9
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 1.3e-54 217.2 142 73.2
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.3e-54 217.2 142 73.9
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 2.2e-54 216.5 142 73.2
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.9e-53 213.4 139 73.4
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.9e-53 213.4 143 70.6
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 3.2e-53 212.6 139 69.8
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 3.2e-53 212.6 160 66.2
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 5.5e-53 211.8 142 72.5
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 9.4e-53 211.1 142 71.1
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 2.1e-52 209.9 142 70.4
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 4.7e-52 208.8 143 69.2
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 4.7e-52 208.8 143 69.2
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.0e-51 207.6 142 69.0
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 3.0e-51 206.1 142 67.6
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 3.0e-51 206.1 142 67.6
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 3.0e-51 206.1 142 67.6
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 3.9e-51 205.7 142 71.8
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 5.1e-51 205.3 143 69.9
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 5.1e-51 205.3 143 69.9
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 1.1e-50 204.1 136 69.9
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 1.5e-50 203.8 142 71.1
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.5e-50 203.8 139 71.9
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 5.7e-50 201.8 137 72.3
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 7.4e-50 201.4 143 66.4
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 7.4e-50 201.4 143 66.4
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 9.7e-50 201.1 153 64.7
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 9.7e-50 201.1 143 65.7
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 9.7e-50 201.1 142 65.5
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 9.7e-50 201.1 141 70.9
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.3e-49 200.7 142 66.9
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 1.3e-49 200.7 185 57.8
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 3.7e-49 199.1 142 64.8
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 4.8e-49 198.7 143 67.1
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 4.8e-49 198.7 173 59.5
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 4.8e-49 198.7 143 67.1
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 4.8e-49 198.7 143 67.1
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 4.8e-49 198.7 143 67.1
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 1.1e-48 197.6 142 64.8
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 1.1e-48 197.6 143 67.1
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.1e-48 197.6 144 75.0
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 2.6e-47 193.0 119 75.6
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 4.5e-47 192.2 122 75.4
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.3e-46 190.7 142 63.4
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 1.7e-46 190.3 102 91.2
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 5.0e-46 188.7 204 52.5
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 6.5e-46 188.3 142 67.6
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 2.5e-45 186.4 142 62.7
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 3.2e-45 186.0 139 65.5
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 1.7e-41 173.7 142 64.1
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 1.1e-40 171.0 137 59.1
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 1.8e-40 170.2 137 62.8
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 5.9e-39 165.2 103 75.7
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 7.7e-39 164.9 142 56.3
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 5.5e-37 158.7 141 58.2
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 2.1e-36 156.8 143 55.2
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 3.0e-35 152.9 138 57.2
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 4.0e-35 152.5 105 60.0
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 2.6e-34 149.8 145 53.8
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 4.4e-34 149.1 138 51.4
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 5.7e-34 148.7 94 75.5
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 7.5e-34 148.3 114 64.0
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 4.8e-33 145.6 135 53.3
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 6.3e-33 145.2 99 65.7
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 2.0e-31 140.2 152 50.7
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 2.0e-31 140.2 104 68.3
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 2.9e-30 136.3 128 50.0
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.1e-29 134.4 119 55.5
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 1.5e-29 134.0 98 66.3
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 5.5e-29 132.1 82 78.0
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.0e-27 127.9 104 59.6
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 4.4e-26 122.5 96 57.3
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 3.5e-23 112.8 139 46.8
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 6.6e-22 108.6 61 88.5
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.6e-20 104.0 101 47.5
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 1.6e-20 104.0 116 46.6
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 1.8e-19 100.5 131 42.7
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.8e-19 100.5 79 57.0
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 1.4e-16 90.9 132 40.9
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.5e-13 80.1 96 41.7
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 2.6e-10 70.1 98 51.0
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 4.4e-10 69.3 66 63.6
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 5.8e-10 68.9 46 82.6
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.3e-09 67.8 42 81.0
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.4e-08 64.3 42 76.2
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 1.9e-08 63.9 100 50.0
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 3.2e-08 63.2 48 62.5
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 2.7e-07 60.1 30 83.3
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 3.5e-07 59.7 114 41.2
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 7.8e-07 58.5 66 57.6
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 1.7e-06 57.4 98 44.9
Psat2g000840 Pisum sativum HOM05D001842 ORTHO05D001849 5.0e-06 55.8 27 92.6
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.6e-06 55.5 65 44.6
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 6.6e-06 55.5 98 44.9


User provided reference genes

Program Settings