Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g098920 Pisum sativum HOM05D004823 ORTHO05D005814 5.5e-59 230.7 112 100.0
Psat2g050440 Pisum sativum HOM05D004823 ORTHO05D036791 3.9e-57 224.6 111 97.3
Psat2g050360 Pisum sativum HOM05D004823 ORTHO05D005814 6.5e-52 207.2 101 97.0
Psat3g163800 Pisum sativum HOM05D004823 ORTHO05D005814 2.3e-41 172.2 90 86.7
Ca_04616_v3 Cicer arietinum L. HOM05D004823 ORTHO05D005814 3.1e-38 161.8 89 80.9
TPR.G14862 Trifolium pratense HOM05D004823 ORTHO05D005814 4.1e-38 161.4 85 84.7
Lj1g0025017 Lotus japonicus HOM05D004823 ORTHO05D005814 2.5e-35 152.1 90 76.7
Medtr7g034575 Medicago truncatula HOM05D004823 ORTHO05D005814 5.5e-35 151.0 85 76.5
Ciclev10018521m.g Citrus clementina HOM05D004823 ORTHO05D005814 2.2e-31 139.0 106 58.5
CiPaw.14G012800 Carya illinoinensis HOM05D004823 ORTHO05D005814 3.7e-31 138.3 92 67.4
QL04p025376 Quercus lobata HOM05D004823 ORTHO05D005814 4.8e-31 137.9 90 64.4
arahy.Tifrunner.gnm1.ann1.61K3Y7 Arachis hypogaea HOM05D004823 ORTHO05D005814 8.2e-31 137.1 83 77.1
Hma1.2p1_0601F.1_g187160 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 1.1e-30 136.7 90 62.2
Hma1.2p1_0601F.1_g187170 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 1.1e-30 136.7 90 62.2
Potri.014G180200 Populus trichocarpa HOM05D004823 ORTHO05D005814 1.1e-30 136.7 90 65.6
Manes.05G060200 Manihot esculenta HOM05D004823 ORTHO05D005814 1.4e-30 136.3 90 67.8
arahy.Tifrunner.gnm1.ann1.GG1KFP Arachis hypogaea HOM05D004823 ORTHO05D005814 2.4e-30 135.6 83 75.9
Haze_02925 Corylus avellana HOM05D004823 ORTHO05D005814 3.1e-30 135.2 90 63.3
Dinv31197 Davidia involucrata HOM05D004823 ORTHO05D005814 3.1e-30 135.2 88 64.8
Cfa011006 Carpinus fangiana HOM05D004823 ORTHO05D005814 4.1e-30 134.8 90 62.2
Gohir.A05G333800 Gossypium hirsutum HOM05D004823 ORTHO05D005814 5.3e-30 134.4 88 63.6
Gohir.D04G072675 Gossypium hirsutum HOM05D004823 ORTHO05D005814 6.9e-30 134.0 88 63.6
Phvul.005G016100 Phaseolus vulgaris HOM05D004823 ORTHO05D005814 1.2e-29 133.3 89 67.4
Atru.chr5.23 Acer truncatum HOM05D004823 ORTHO05D005814 1.5e-29 132.9 87 62.1
Atru.chr5.51 Acer truncatum HOM05D004823 ORTHO05D005814 1.5e-29 132.9 87 62.1
TAR375G0889 Trochodendron aralioides HOM05D004823 ORTHO05D005814 1.5e-29 132.9 111 55.0
VMungo1080G1086 Vigna mungo HOM05D004823 ORTHO05D005814 2.0e-29 132.5 93 67.7
Thecc.10G001100 Theobroma cacao HOM05D004823 ORTHO05D005814 5.9e-29 131.0 89 60.7
vmacro21094 Vaccinium macrocarpon HOM05D004823 ORTHO05D005814 5.9e-29 131.0 103 55.3
Gorai.012G081700 Gossypium raimondii HOM05D004823 ORTHO05D005814 7.7e-29 130.6 88 62.5
Cpa.g.sc10.21 Carica papaya HOM05D004823 ORTHO05D005814 1.0e-28 130.2 77 72.7
CSS0005414 Camellia sinensis var. sinensis HOM05D004823 ORTHO05D005814 3.8e-28 128.3 118 48.3
Glyma.06G310500 Glycine max HOM05D004823 ORTHO05D005814 3.8e-28 128.3 93 68.8
Sabra14G0140400 Salix brachista HOM05D004823 ORTHO05D005814 5.0e-28 127.9 89 62.9
TWI23G0233 Tripterygium wilfordii HOM05D004823 ORTHO05D005814 6.5e-28 127.5 89 59.6
GSVIVG01018404001 Vitis vinifera HOM05D004823 ORTHO05D005814 6.5e-28 127.5 89 64.0
Duzib106G1753 Durio zibethinus HOM05D004823 ORTHO05D005814 8.5e-28 127.1 80 66.2
Oeu034864.1 Olea europaea HOM05D004823 ORTHO05D005814 1.4e-27 126.3 84 64.3
Cc00_g16960 Coffea canephora HOM05D004823 ORTHO05D005814 1.9e-27 125.9 88 59.1
Actinidia33293 Actinidia chinensis HOM05D004823 ORTHO05D005814 2.5e-27 125.6 118 48.3
PGR083G0266 Punica granatum HOM05D004823 ORTHO05D005814 2.5e-27 125.6 89 59.6
Eucgr.D01139 Eucalyptus grandis HOM05D004823 ORTHO05D005814 4.2e-27 124.8 89 61.8
RcHm_v2.0_Chr1g0343241 Rosa chinensis HOM05D004823 ORTHO05D005814 4.2e-27 124.8 90 61.1
COL.COLO4_19317 Corchorus olitorius HOM05D004823 ORTHO05D005814 5.5e-27 124.4 93 58.1
ClCG05G002760 Citrullus lanatus HOM05D004823 ORTHO05D005814 2.7e-26 122.1 89 57.3
A09p65740 Brassica napus HOM05D004823 ORTHO05D005814 3.6e-26 121.7 89 56.2
BraA09t41917Z Brassica rapa HOM05D004823 ORTHO05D005814 3.6e-26 121.7 89 56.2
CARHR008760 Cardamine hirsuta HOM05D004823 ORTHO05D005814 4.7e-26 121.3 89 57.3
Aa31sc17G210 Aethionema arabicum HOM05D004823 ORTHO05D005814 6.1e-26 120.9 89 56.2
BcaC07g41923 Brassica carinata HOM05D004823 ORTHO05D005814 6.1e-26 120.9 89 56.2
C08p49810 Brassica napus HOM05D004823 ORTHO05D005814 6.1e-26 120.9 89 56.2
BolC8t52508H Brassica oleracea HOM05D004823 ORTHO05D005814 6.1e-26 120.9 89 56.2
Aqoxy5G01066 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 8.0e-26 120.6 105 52.4
Aqoxy7G00645 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 8.0e-26 120.6 105 52.4
Carub.0001s0819 Capsella rubella HOM05D004823 ORTHO05D005814 1.4e-25 119.8 89 55.1
CANSAT21G1834 Cannabis sativa HOM05D004823 ORTHO05D005814 1.8e-25 119.4 88 58.0
Migut.B01471 Erythranthe guttata HOM05D004823 ORTHO05D005814 3.0e-25 118.6 88 56.8
MD07G1085900 Malus domestica HOM05D004823 ORTHO05D005814 3.9e-25 118.2 89 58.4
Sp1g07480 Schrenkiella parvula HOM05D004823 ORTHO05D005814 3.9e-25 118.2 89 55.1
AUR62023352 Chenopodium quinoa HOM05D004823 ORTHO05D005814 5.2e-25 117.9 84 52.4
THA.LOC104808236 Tarenaya hassleriana HOM05D004823 ORTHO05D005814 5.2e-25 117.9 89 52.8
Thhalv10006571m.g Eutrema salsugineum HOM05D004823 ORTHO05D005814 6.7e-25 117.5 87 55.2
Rhsim01G0145100 Rhododendron simsii HOM05D004823 ORTHO05D005814 6.7e-25 117.5 78 61.5
AL1G19270 Arabidopsis lyrata HOM05D004823 ORTHO05D005814 8.8e-25 117.1 87 56.3
AT1G08840 Arabidopsis thaliana HOM05D004823 ORTHO05D005814 8.8e-25 117.1 87 56.3
Prupe.2G112200 Prunus persica HOM05D004823 ORTHO05D005814 2.6e-24 115.5 89 58.4
Sed0025177 Sechium edule HOM05D004823 ORTHO05D005814 2.6e-24 115.5 89 55.1
CAN.G1480.3 Capsicum annuum HOM05D004823 ORTHO05D005814 4.4e-24 114.8 85 57.6
CsaV3_3G010270 Cucumis sativus L. HOM05D004823 ORTHO05D005814 4.4e-24 114.8 89 53.9
Sc08g0006560 Simmondsia chinensis HOM05D004823 ORTHO05D005814 4.4e-24 114.8 86 53.5
Lsat_1_v5_gn_4_44681 Lactuca sativa HOM05D004823 ORTHO05D005814 7.4e-24 114.0 109 49.5
SEGI_24819 Sequoiadendron giganteum HOM05D066805 ORTHO05D005814 7.4e-24 114.0 86 58.1
SGA_v2.0_scaffold578G53026 Striga asiatica HOM05D004823 ORTHO05D005814 7.4e-24 114.0 89 53.9
Ah.15g091500 Amaranthus hybridus HOM05D004823 ORTHO05D005814 9.7e-24 113.6 76 59.2
Nn1g00608 Nelumbo nucifera HOM05D004823 ORTHO05D005814 9.7e-24 113.6 115 47.0
Nitab4.5_0006227g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 9.7e-24 113.6 85 54.1
AUR62013806 Chenopodium quinoa HOM05D004823 ORTHO05D005814 1.3e-23 113.2 84 52.4
FAN03G0722 Fragaria x ananassa HOM05D004823 ORTHO05D005814 1.3e-23 113.2 90 58.9
DCAR_029534 Daucus carota HOM05D004823 ORTHO05D005814 1.7e-23 112.8 87 55.2
FvH4_7g08480 Fragaria vesca HOM05D004823 ORTHO05D005814 1.7e-23 112.8 90 57.8
FAN06G0930 Fragaria x ananassa HOM05D004823 ORTHO05D005814 1.7e-23 112.8 90 57.8
Solyc01g088380.3 Solanum lycopersicum HOM05D004823 ORTHO05D005814 2.8e-23 112.1 88 55.7
Sopen01g035210 Solanum pennellii HOM05D004823 ORTHO05D005814 2.8e-23 112.1 88 55.7
Nitab4.5_0013532g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 3.7e-23 111.7 85 54.1
MD02G1227500 Malus domestica HOM05D004823 ORTHO05D005814 4.8e-23 111.3 89 55.1
EL10Ac8g19253 Beta vulgaris HOM05D004823 ORTHO05D005814 6.3e-23 110.9 84 52.4
MELO3C006248.2 Cucumis melo HOM05D004823 ORTHO05D005814 6.3e-23 110.9 89 50.6
ECA234G1924 Erigeron canadensis HOM05D004823 ORTHO05D005814 6.3e-23 110.9 79 64.6
HPP92_003322 Vanilla planifolia HOM05D004823 ORTHO05D005814 1.1e-22 110.2 85 55.3
HPP92_003323 Vanilla planifolia HOM05D004823 ORTHO05D005814 1.1e-22 110.2 85 55.3
FAN10G1986 Fragaria x ananassa HOM05D004823 ORTHO05D005814 1.4e-22 109.8 90 57.8
Peaxi162Scf01124g00124 Petunia axillaris HOM05D004823 ORTHO05D005814 1.8e-22 109.4 100 50.0
Lj7C553G7 Lonicera japonica HOM05D004823 ORTHO05D005814 2.4e-22 109.0 68 66.2
Peaxi162Scf00417g00039 Petunia axillaris HOM05D004823 ORTHO05D005814 1.2e-21 106.7 100 49.0
HanXRQChr08g0226321 Helianthus annuus HOM05D004823 ORTHO05D005814 1.6e-21 106.3 109 48.6
Hund17140 Selenicereus undatus HOM05D004823 ORTHO05D005814 3.5e-21 105.1 83 49.4
FAN10G0616 Fragaria x ananassa HOM05D004823 ORTHO05D005814 1.0e-20 103.6 79 59.5
ATR0705G062 Amborella trichopoda HOM05D004823 ORTHO05D005814 3.8e-20 101.7 106 45.3
RcHm_v2.0_Chr2g0122961 Rosa chinensis HOM05D004823 ORTHO05D005814 3.8e-20 101.7 72 62.5
PSO063G2621 Papaver somniferum HOM05D004823 ORTHO05D005814 1.1e-19 100.1 84 48.8
PSO782G4318 Papaver somniferum HOM05D004823 ORTHO05D005814 1.5e-19 99.8 84 47.6
SHI13672 Sapria himalayana HOM05D004823 ORTHO05D005814 1.5e-19 99.8 91 48.4
Os04g0588200 Oryza sativa ssp. japonica HOM05D004823 ORTHO05D005814 1.9e-19 99.4 81 50.6
Zm00001eb072560 Zea mays HOM05D004823 ORTHO05D005814 4.2e-19 98.2 88 48.9
CDE11G0754 Ceratophyllum demersum HOM05D004823 ORTHO05D005814 4.7e-18 94.7 85 48.2
unitig_8.g3844 Utricularia gibba HOM05D004823 ORTHO05D005814 8.0e-18 94.0 86 52.3
Mapoly0039s0120 Marchantia polymorpha HOM05D004823 ORTHO05D005814 8.8e-17 90.5 78 48.7
AagrBONN_evm.TU.Sc2ySwM_362.2737 Anthoceros agrestis HOM05D004823 ORTHO05D005814 3.3e-16 88.6 79 50.6
MBI17_g09706_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 4.5e-13 78.2 56 53.6
SEGI_04973 Sequoiadendron giganteum HOM05D004823 ORTHO05D005814 5.9e-13 77.8 54 59.3
MBI05_g27233_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 3.8e-12 75.1 56 51.8
MBI13_g01094_MAGBIO Magnolia biondii HOM05D002050 ORTHO05D001949 1.6e-10 69.7 56 50.0
MBI08_g06419_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 8.8e-09 63.9 55 43.6
CBR_g41486 Chara braunii HOM05D004823 ORTHO05D005814 4.4e-08 61.6 96 35.4
MBI08_g07078_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 5.7e-08 61.2 51 45.1
Lalb_Chr03g0040701 Lupinus albus HOM05D004823 ORTHO05D005814 2.2e-07 59.3 32 81.2
Psat0s5282g0120 Pisum sativum HOM05D004823 ORTHO05D329089 2.2e-07 59.3 36 80.6
MBI15_g07200_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 2.8e-07 58.9 39 56.4
Cc07_g20090 Coffea canephora HOM05D004823 ORTHO05D005814 2.4e-06 55.8 35 65.7


User provided reference genes

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