Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3170g0120 Pisum sativum HOM05D000280 ORTHO05D028299 5.1e-145 517.7 255 100.0
Medtr8g087950 Medicago truncatula HOM05D000280 ORTHO05D006100 4.4e-56 222.2 128 87.5
Ca_17873_v3 Cicer arietinum L. HOM05D000280 ORTHO05D006100 9.8e-56 221.1 127 89.8
TPR.G6781 Trifolium pratense HOM05D000280 ORTHO05D006100 3.7e-55 219.2 127 86.6
Glyma.08G121100 Glycine max HOM05D000280 ORTHO05D006100 7.8e-53 211.5 126 84.9
Lj4g0007463 Lotus japonicus HOM05D000280 ORTHO05D006100 7.8e-53 211.5 127 81.9
Glyma.05G163800 Glycine max HOM05D000280 ORTHO05D006100 2.3e-52 209.9 126 84.1
Psat7g066640 Pisum sativum HOM05D000280 ORTHO05D006100 3.9e-52 209.1 165 70.9
VMungo0251G0391 Vigna mungo HOM05D000280 ORTHO05D006100 2.5e-51 206.5 126 81.7
Phvul.002G243900 Phaseolus vulgaris HOM05D000280 ORTHO05D006100 1.6e-50 203.8 126 80.2
arahy.Tifrunner.gnm1.ann1.SPY8PK Arachis hypogaea HOM05D000280 ORTHO05D006100 2.1e-50 203.4 120 83.3
arahy.Tifrunner.gnm1.ann1.Z3E7QY Arachis hypogaea HOM05D000280 ORTHO05D006100 2.1e-50 203.4 120 83.3
Lalb_Chr12g0204821 Lupinus albus HOM05D000280 ORTHO05D006100 2.1e-50 203.4 120 85.0
Duzib168G0370 Durio zibethinus HOM05D000280 ORTHO05D006100 2.3e-49 199.9 127 74.0
Thecc.09G006100 Theobroma cacao HOM05D000280 ORTHO05D006100 9.9e-48 194.5 127 74.0
Gohir.A05G065100 Gossypium hirsutum HOM05D000280 ORTHO05D006100 2.9e-47 193.0 127 72.4
Dinv17597 Davidia involucrata HOM05D000280 ORTHO05D006100 4.9e-47 192.2 184 57.6
Cpa.g.sc23.2 Carica papaya HOM05D000280 ORTHO05D006100 6.4e-47 191.8 127 70.9
TWI32G0853 Tripterygium wilfordii HOM05D000280 ORTHO05D006100 1.1e-46 191.0 120 75.8
MD08G1131300 Malus domestica HOM05D000280 ORTHO05D006100 3.2e-46 189.5 127 72.4
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 5.4e-46 188.7 146 64.4
Prupe.1G461200 Prunus persica HOM05D000280 ORTHO05D006100 5.4e-46 188.7 127 70.1
Gohir.A06G106400 Gossypium hirsutum HOM05D000280 ORTHO05D006100 7.1e-46 188.3 126 70.6
Gorai.009G068500 Gossypium raimondii HOM05D000280 ORTHO05D006100 9.2e-46 188.0 126 70.6
Gohir.D05G067700 Gossypium hirsutum HOM05D000280 ORTHO05D006100 1.2e-45 187.6 126 70.6
MD15G1109000 Malus domestica HOM05D000280 ORTHO05D006100 1.6e-45 187.2 127 71.7
Manes.03G003000 Manihot esculenta HOM05D000280 ORTHO05D006100 2.1e-45 186.8 127 72.4
Haze_21719 Corylus avellana HOM05D000280 ORTHO05D006100 3.5e-45 186.0 127 70.9
Gohir.D06G108600 Gossypium hirsutum HOM05D000280 ORTHO05D006100 3.5e-45 186.0 126 69.8
Gorai.010G123300 Gossypium raimondii HOM05D000280 ORTHO05D006100 3.5e-45 186.0 126 69.8
RcHm_v2.0_Chr6g0304851 Rosa chinensis HOM05D000280 ORTHO05D006100 7.8e-45 184.9 127 72.4
Actinidia03575 Actinidia chinensis HOM05D000280 ORTHO05D006100 1.0e-44 184.5 126 71.4
Lj4A878G36 Lonicera japonica HOM05D000280 ORTHO05D006100 1.0e-44 184.5 126 72.2
CiPaw.08G018800 Carya illinoinensis HOM05D000280 ORTHO05D006100 1.3e-44 184.1 120 75.0
Actinidia14148 Actinidia chinensis HOM05D000280 ORTHO05D006100 1.7e-44 183.7 126 70.6
CANSAT11G2600 Cannabis sativa HOM05D000280 ORTHO05D006100 1.7e-44 183.7 125 70.4
Hma1.2p1_0751F.1_g212700 Hydrangea macrophylla HOM05D000280 ORTHO05D006100 5.1e-44 182.2 124 71.8
TAR622G1315 Trochodendron aralioides HOM05D000280 ORTHO05D006100 5.1e-44 182.2 124 70.2
Eucgr.C04004 Eucalyptus grandis HOM05D000280 ORTHO05D006100 1.1e-43 181.0 127 66.9
PGR044G0314 Punica granatum HOM05D000280 ORTHO05D006100 1.5e-43 180.6 125 65.6
Potri.006G275500 Populus trichocarpa HOM05D000280 ORTHO05D006100 1.9e-43 180.3 128 70.3
QL12p024915 Quercus lobata HOM05D000280 ORTHO05D006100 2.5e-43 179.9 127 70.1
vmacro05110 Vaccinium macrocarpon HOM05D000280 ORTHO05D006100 3.3e-43 179.5 127 71.7
ClCG05G017490 Citrullus lanatus HOM05D000280 ORTHO05D006100 5.6e-43 178.7 127 69.3
Rhsim07G0169700 Rhododendron simsii HOM05D000280 ORTHO05D006100 5.6e-43 178.7 126 69.8
HanXRQChr12g0371811 Helianthus annuus HOM05D000280 ORTHO05D006100 9.6e-43 177.9 124 70.2
Cc04_g07010 Coffea canephora HOM05D000280 ORTHO05D006100 1.2e-42 177.6 126 69.0
MELO3C003637.2 Cucumis melo HOM05D000280 ORTHO05D006100 1.2e-42 177.6 127 68.5
Ciclev10007529m.g Citrus clementina HOM05D000280 ORTHO05D006100 1.6e-42 177.2 127 67.7
CsaV3_3G046990 Cucumis sativus L. HOM05D000280 ORTHO05D006100 1.6e-42 177.2 127 68.5
Lsat_1_v5_gn_8_154301 Lactuca sativa HOM05D000280 ORTHO05D006100 1.6e-42 177.2 124 68.5
FAN15G1693 Fragaria x ananassa HOM05D000280 ORTHO05D008407 2.1e-42 176.8 127 68.5
CAN.G1425.23 Capsicum annuum HOM05D000280 ORTHO05D006100 2.8e-42 176.4 124 66.9
FvH4_2g36930 Fragaria vesca HOM05D000280 ORTHO05D006100 2.8e-42 176.4 127 68.5
Nn7g38182 Nelumbo nucifera HOM05D000280 ORTHO05D006100 2.8e-42 176.4 125 69.6
Sabra06G0213300 Salix brachista HOM05D000280 ORTHO05D008407 2.8e-42 176.4 126 69.0
CiPaw.07G213900 Carya illinoinensis HOM05D000280 ORTHO05D006100 6.2e-42 175.3 127 68.5
FAN27G1572 Fragaria x ananassa HOM05D000280 ORTHO05D008407 6.2e-42 175.3 127 67.7
unitig_21.g20433 Utricularia gibba HOM05D000280 ORTHO05D006100 1.1e-41 174.5 126 69.0
DCAR_002123 Daucus carota HOM05D000280 ORTHO05D006100 1.4e-41 174.1 126 67.5
Thhalv10012906m.g Eutrema salsugineum HOM05D000280 ORTHO05D006100 1.4e-41 174.1 127 64.6
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 1.4e-41 174.1 127 67.7
Carub.0006s0912 Capsella rubella HOM05D000280 ORTHO05D006100 1.8e-41 173.7 127 64.6
THA.LOC104814967 Tarenaya hassleriana HOM05D000280 ORTHO05D006100 1.8e-41 173.7 124 67.7
TWI34G1405 Tripterygium wilfordii HOM05D000280 ORTHO05D006100 2.4e-41 173.3 121 70.2
Aqoxy6G02767 Aquilegia oxysepala HOM05D000280 ORTHO05D006100 3.1e-41 172.9 125 67.2
AT5G10630 Arabidopsis thaliana HOM05D000280 ORTHO05D006100 3.1e-41 172.9 127 63.8
SalBow8G3273 Salvia bowleyana HOM05D000280 ORTHO05D006100 3.1e-41 172.9 127 63.0
FAN20G0398 Fragaria x ananassa HOM05D000280 ORTHO05D008407 4.0e-41 172.6 127 66.9
Oeu017963.1 Olea europaea HOM05D000280 ORTHO05D006100 4.0e-41 172.6 124 66.1
A03p04670 Brassica napus HOM05D000280 ORTHO05D006100 5.2e-41 172.2 127 63.8
BraA03t09807Z Brassica rapa HOM05D000280 ORTHO05D006100 5.2e-41 172.2 127 63.8
BcaB01g06268 Brassica carinata HOM05D000280 ORTHO05D006100 8.9e-41 171.4 127 64.6
C03p05380 Brassica napus HOM05D000280 ORTHO05D006100 8.9e-41 171.4 127 63.8
Nitab4.5_0001536g0070 Nicotiana tabacum HOM05D000280 ORTHO05D006100 8.9e-41 171.4 124 65.3
Sed0016088 Sechium edule HOM05D000280 ORTHO05D006100 1.2e-40 171.0 127 65.4
BcaB05g21493 Brassica carinata HOM05D000280 ORTHO05D006100 1.5e-40 170.6 127 63.0
MBI06_g17218_MAGBIO Magnolia biondii HOM05D000280 ORTHO05D006100 1.5e-40 170.6 125 64.0
Peaxi162Scf00634g00037 Petunia axillaris HOM05D000280 ORTHO05D006100 1.5e-40 170.6 124 63.7
Peaxi162Scf00683g00036 Petunia axillaris HOM05D000280 ORTHO05D006100 1.5e-40 170.6 124 63.7
Aqoxy7G02538 Aquilegia oxysepala HOM05D000280 ORTHO05D006100 2.6e-40 169.9 125 66.4
BcaC03g13321 Brassica carinata HOM05D000280 ORTHO05D006100 2.6e-40 169.9 127 63.8
BolC2t06416H Brassica oleracea HOM05D000280 ORTHO05D006100 2.6e-40 169.9 127 63.8
Migut.D02069 Erythranthe guttata HOM05D000280 ORTHO05D006100 3.4e-40 169.5 127 60.6
Nitab4.5_0023239g0010 Nicotiana tabacum HOM05D000280 ORTHO05D006100 3.4e-40 169.5 124 64.5
Solyc12g036410.3 Solanum lycopersicum HOM05D000280 ORTHO05D006100 3.4e-40 169.5 124 64.5
Sopen12g016940 Solanum pennellii HOM05D000280 ORTHO05D006100 3.4e-40 169.5 124 64.5
THA.LOC104803321 Tarenaya hassleriana HOM05D000280 ORTHO05D006100 4.4e-40 169.1 127 66.1
BolC3t13051H Brassica oleracea HOM05D000280 ORTHO05D006100 5.8e-40 168.7 127 63.0
A02p00570 Brassica napus HOM05D000280 ORTHO05D006100 7.6e-40 168.3 127 62.2
BraA02t05040Z Brassica rapa HOM05D000280 ORTHO05D006100 7.6e-40 168.3 127 62.2
Oeu052532.1 Olea europaea HOM05D000280 ORTHO05D006100 7.6e-40 168.3 124 65.3
PSO732G0431 Papaver somniferum HOM05D000280 ORTHO05D006100 7.6e-40 168.3 125 65.6
Solyc03g119290.3 Solanum lycopersicum HOM05D000280 ORTHO05D006100 7.6e-40 168.3 124 62.9
EL10Ac2g03735 Beta vulgaris HOM05D000280 ORTHO05D006100 9.9e-40 167.9 119 69.7
C02p04560 Brassica napus HOM05D000280 ORTHO05D006100 9.9e-40 167.9 127 62.2
PGSC0003DMG400005728 Solanum tuberosum HOM05D000280 ORTHO05D006100 9.9e-40 167.9 124 64.5
CARHR202670 Cardamine hirsuta HOM05D000280 ORTHO05D006100 1.3e-39 167.5 120 65.0
Nitab4.5_0002906g0130 Nicotiana tabacum HOM05D000548 ORTHO05D001552 1.3e-39 167.5 121 64.5
PSO675G6860 Papaver somniferum HOM05D000280 ORTHO05D006100 1.3e-39 167.5 125 64.8
GSVIVG01015660001 Vitis vinifera HOM05D000280 ORTHO05D006100 1.3e-39 167.5 125 65.6
AUR62009047 Chenopodium quinoa HOM05D000280 ORTHO05D006100 2.2e-39 166.8 126 63.5
ECA233G5364 Erigeron canadensis HOM05D000280 ORTHO05D006100 2.2e-39 166.8 124 64.5
Sopen03g038170 Solanum pennellii HOM05D000280 ORTHO05D006100 2.2e-39 166.8 124 63.7
RcHm_v2.0_Chr6g0302681 Rosa chinensis HOM05D000280 ORTHO05D006100 3.8e-39 166.0 128 67.2
MSTRG.4317 Avicennia marina HOM05D000280 ORTHO05D006100 4.9e-39 165.6 127 62.2
Sp6g32810 Schrenkiella parvula HOM05D000280 ORTHO05D006100 4.9e-39 165.6 127 61.4
Sed0003669 Sechium edule HOM05D000280 ORTHO05D006100 1.4e-38 164.1 127 64.6
Sc23g0005160 Simmondsia chinensis HOM05D000280 ORTHO05D006100 1.4e-38 164.1 120 66.7
Atru.chr7.2629 Acer truncatum HOM05D000280 ORTHO05D006100 2.4e-38 163.3 127 63.8
Ah.11g043740 Amaranthus hybridus HOM05D000280 ORTHO05D006100 4.2e-38 162.5 117 65.8
COL.COLO4_19045 Corchorus olitorius HOM05D000280 ORTHO05D006100 5.4e-38 162.2 127 66.1
Hund19401 Selenicereus undatus HOM05D000280 ORTHO05D006100 5.4e-38 162.2 125 65.6
AUR62020615 Chenopodium quinoa HOM05D000280 ORTHO05D006100 1.2e-37 161.0 122 63.9
FAN20G1379 Fragaria x ananassa HOM05D000280 ORTHO05D006100 2.7e-37 159.8 128 64.1
Aa31LG3G16360 Aethionema arabicum HOM05D000280 ORTHO05D006100 3.5e-37 159.5 124 60.5
FAN15G1052 Fragaria x ananassa HOM05D000280 ORTHO05D006100 3.5e-37 159.5 128 64.8
ATR0665G368 Amborella trichopoda HOM05D000280 ORTHO05D006100 6.0e-37 158.7 117 66.7
FvH4_2g38640 Fragaria vesca HOM05D000280 ORTHO05D006100 7.8e-37 158.3 128 64.1
CDE03G0365 Ceratophyllum demersum HOM05D000280 ORTHO05D006100 5.1e-36 155.6 117 63.2
CSS0007869 Camellia sinensis var. sinensis HOM05D000280 ORTHO05D006100 8.7e-36 154.8 126 65.1
Zm00001eb430090 Zea mays HOM05D000280 ORTHO05D006100 1.1e-35 154.5 125 60.8
FAN08G0164 Fragaria x ananassa HOM05D000280 ORTHO05D006100 1.5e-35 154.1 128 62.5
Nitab4.5_0000208g0390 Nicotiana tabacum HOM05D000280 ORTHO05D006100 7.3e-35 151.8 157 50.3
Zm00001eb066140 Zea mays HOM05D000280 ORTHO05D006100 7.3e-35 151.8 129 60.5
Os01g0116600 Oryza sativa ssp. japonica HOM05D000280 ORTHO05D006100 3.6e-34 149.4 135 55.6
SGA_v2.0_scaffold74G24572 Striga asiatica HOM05D000280 ORTHO05D006100 4.8e-34 149.1 130 57.7
BcaB01g05511 Brassica carinata HOM05D000280 ORTHO05D006100 8.1e-34 148.3 121 59.5
Os04g0677800 Oryza sativa ssp. japonica HOM05D000280 ORTHO05D006100 6.9e-33 145.2 126 57.9
HPP92_020873 Vanilla planifolia HOM05D000280 ORTHO05D006100 6.9e-33 145.2 127 58.3
HPP92_028114 Vanilla planifolia HOM05D000280 ORTHO05D006100 2.0e-32 143.7 127 57.5
BcaB01g06266 Brassica carinata HOM05D000280 ORTHO05D006100 7.1e-30 135.2 103 60.2
SEGI_34072 Sequoiadendron giganteum HOM05D000280 ORTHO05D006100 1.6e-29 134.0 122 52.5
SEGI_04248 Sequoiadendron giganteum HOM05D000280 ORTHO05D006100 7.9e-29 131.7 115 53.9
FAN27G1445 Fragaria x ananassa HOM05D000280 ORTHO05D006100 3.9e-28 129.4 108 63.0
SMO351G0182 Selaginella moellendorffii HOM05D000280 ORTHO05D006100 1.9e-27 127.1 149 44.3
FvH4_5g19710 Fragaria vesca HOM05D000280 ORTHO05D006100 4.8e-26 122.5 108 60.2
AagrBONN_evm.TU.Sc2ySwM_369.168 Anthoceros agrestis HOM05D000280 ORTHO05D006100 1.4e-25 120.9 124 47.6
HPP92_004269 Vanilla planifolia HOM05D000280 ORTHO05D006100 5.3e-25 119.0 110 51.8
Mapoly0066s0056 Marchantia polymorpha HOM05D000280 ORTHO05D006100 2.2e-23 113.6 123 45.5
Pp3c5_28870 Physcomitrium patens HOM05D000280 ORTHO05D006100 2.9e-23 113.2 126 42.9
CBR_g11026 Chara braunii HOM05D000280 ORTHO05D006100 5.4e-22 109.0 122 44.3
BcaB01g05514 Brassica carinata HOM05D000280 ORTHO05D006100 1.9e-19 100.5 119 47.1
Cre13.g565750 Chlamydomonas reinhardtii HOM05D000280 ORTHO05D006100 1.8e-17 94.0 133 41.4
BolC3t13039H Brassica oleracea HOM05D000249 ORTHO05D000206 1.5e-11 74.3 100 42.0
Hma1.2p1_0195F.1_g084670 Hydrangea macrophylla HOM05D000280 ORTHO05D028299 1.9e-11 73.9 59 59.3
Haze_26875 Corylus avellana HOM05D000280 ORTHO05D006100 1.1e-09 68.2 139 28.1
PRCOL_00006643 Prasinoderma coloniale HOM05D000280 ORTHO05D006100 2.6e-08 63.5 133 31.6
SEGI_06036 Sequoiadendron giganteum HOM05D000280 ORTHO05D006100 1.3e-07 61.2 62 46.8
Mapoly0103s0007 Marchantia polymorpha HOM05D000280 ORTHO05D004091 3.8e-07 59.7 140 30.0
MCO03G493 Micromonas commoda HOM05D000280 ORTHO05D004091 8.4e-07 58.5 132 31.8
CAN.G1129.35 Capsicum annuum HOM05D000280 ORTHO05D004091 4.2e-06 56.2 122 32.0
PSO017G0192 Papaver somniferum HOM05D000280 ORTHO05D004091 4.2e-06 56.2 122 31.1
PSO170G0215 Papaver somniferum HOM05D000280 ORTHO05D004091 4.2e-06 56.2 122 31.1
Pp3c27_2160 Physcomitrium patens HOM05D000280 ORTHO05D004091 4.2e-06 56.2 129 27.1
Potri.013G093400 Populus trichocarpa HOM05D000280 ORTHO05D004091 9.3e-06 55.1 122 29.5
Sabra13G0080300 Salix brachista HOM05D000280 ORTHO05D004091 9.3e-06 55.1 122 29.5


User provided reference genes

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