Gene: AT5G10630
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G10630
- Transcript Identifier AT5G10630.2
- Gene Type Coding gene
- Location Chr5 : 3360561-3364414 : positive
Gene Family Information
- ID HOM05D000280
- #Genes/#Species 1564/100
- Phylogenetic origin
- ID ORTHO05D006100
- #Genes/#Species 147/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G10630.2
- uniprot F4KI84
Descriptions
- Description Translation elongation factor EF1A/initiation factor IF2gamma family protein
- Computational description Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Zinc finger, RanBP2-type (InterPro:IPR001876), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein (TAIR:AT1G18070.2); Has 86905 Blast hits to 86827 proteins in 18414 species: Archae - 1008; Bacteria - 36763; Metazoa - 20627; Fungi - 12842; Plants - 2029; Viruses - 6; Other Eukaryotes - 13630 (source: NCBI BLink).
- Computational description Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Zinc finger, RanBP2-type (InterPro:IPR001876), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein (TAIR:AT1G18070.2).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0070481 | IEP | Gene Ontology | nuclear-transcribed mRNA catabolic process, non-stop decay | 1 |
| GO:0006412 | IEA | GOA Database | translation | |
| GO:0006413 | IEA | GOA Database | translational initiation | |
| GO:0006414 | IEA | GOA Database | translational elongation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003924 | IEA | Gene Ontology | GTPase activity | |
| GO:0003924 | IEA | InterPro | GTPase activity | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0003746 | IEA | GOA Database | translation elongation factor activity | |
| GO:0003743 | IEA | GOA Database | translation initiation factor activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0005525 | IEA | GOA Database | GTP binding | |
| GO:0005525 | IEA | InterPro | GTP binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISM | Gene Ontology | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001876 | Zinc finger, RanBP2-type |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR009000 | Translation protein, beta-barrel domain superfamily |
| IPR004160 | Translation elongation factor EFTu/EF1A, C-terminal |
| IPR004161 | Translation elongation factor EFTu-like, domain 2 |
| IPR009001 | Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal |
| IPR036443 | Zinc finger, RanBP2-type superfamily |
| IPR000795 | Translational (tr)-type GTP-binding domain |
| Mapman id | Description |
|---|---|
| 16.4.1.2.6.4 | RNA processing.RNA surveillance.exosome complex.associated co-factor activities.SUPERKILLER (SKI) regulation complex.associated EXO9 interaction GTPase (SKI7) |
| 17.3.3.1.2 | Protein biosynthesis.mRNA quality control.NGD No-Go Decay.DOM34-HBS1 aberrant mRNA detection complex.GTPase component HBS1/SPL33/SKI7 |