Gene: C02p04560
General Information
Structural Information
- Species Brassica napus
- Gene Identifier C02p04560
- Transcript Identifier C02p04560
- Gene Type Coding gene
- Location C02 : 2483111-2487500 : positive
Gene Family Information
- ID HOM05D000280
- #Genes/#Species 1564/100
- Phylogenetic origin
- ID ORTHO05D006100
- #Genes/#Species 147/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid C02p04560.1_BnaDAR
- v5 BnaC02g00220D
- single_cell_id C02p04560.1-BnaDAR
- ensembl GSBRNA2T00069030001
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0070481 | ISO | PLAZA Integrative Orthology | nuclear-transcribed mRNA catabolic process, non-stop decay | AT5G10630 |
| GO:0006414 | ISO | PLAZA Homology (enrichment) | translational elongation | HOM05D000280 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005525 | IEA | InterPro | GTP binding | |
| GO:0003924 | IEA | InterPro | GTPase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G10630 |
| GO:0003746 | ISO | PLAZA Homology (enrichment) | translation elongation factor activity | HOM05D000280 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR004161 | Translation elongation factor EFTu-like, domain 2 |
| IPR000795 | Translational (tr)-type GTP-binding domain |
| IPR004160 | Translation elongation factor EFTu/EF1A, C-terminal |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR036443 | Zinc finger, RanBP2-type superfamily |
| IPR009000 | Translation protein, beta-barrel domain superfamily |
| IPR009001 | Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal |
| Mapman id | Description |
|---|---|
| 16.4.1.2.6.4 | RNA processing.RNA surveillance.exosome complex.associated co-factor activities.SUPERKILLER (SKI) regulation complex.associated EXO9 interaction GTPase (SKI7) |
| 17.3.3.1.2 | Protein biosynthesis.mRNA quality control.NGD No-Go Decay.DOM34-HBS1 aberrant mRNA detection complex.GTPase component HBS1/SPL33/SKI7 |