Gene: Pp3c5_28870
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c5_28870
- Transcript Identifier Pp3c5_28870V3.1
- Gene Type Coding gene
- Location Chr05 : 20503344-20508736 : positive
Gene Family Information
- ID HOM05D000280
- #Genes/#Species 1564/100
- Phylogenetic origin
- ID ORTHO05D006100
- #Genes/#Species 147/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c5_28870V3.1
- pacid 32953450
- alias Pp1s229_58V6
- alias Phpat.005G104100
- alias Phypa_92711
- uniprot A0A2K1KLF2
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | IBA | GOA Database | translation | |
| GO:0006414 | IBA | GOA Database | translational elongation | |
| GO:0070481 | ISO | PLAZA Integrative Orthology | nuclear-transcribed mRNA catabolic process, non-stop decay | AT5G10630 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003924 | IBA IEA | GOA Database | GTPase activity | |
| GO:0003924 | IEA | InterPro | GTPase activity | |
| GO:0005525 | IEA | GOA Database | GTP binding | |
| GO:0005525 | IEA | InterPro | GTP binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0003746 | IBA | GOA Database | translation elongation factor activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G10630 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001876 | Zinc finger, RanBP2-type |
| IPR036443 | Zinc finger, RanBP2-type superfamily |
| IPR000795 | Translational (tr)-type GTP-binding domain |
| IPR004160 | Translation elongation factor EFTu/EF1A, C-terminal |
| IPR009001 | Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal |
| IPR009000 | Translation protein, beta-barrel domain superfamily |
| Mapman id | Description |
|---|---|
| 16.4.1.2.6.4 | RNA processing.RNA surveillance.exosome complex.associated co-factor activities.SUPERKILLER (SKI) regulation complex.associated EXO9 interaction GTPase (SKI7) |
| 17.3.3.1.2 | Protein biosynthesis.mRNA quality control.NGD No-Go Decay.DOM34-HBS1 aberrant mRNA detection complex.GTPase component HBS1/SPL33/SKI7 |