Gene: Sopen12g016940
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen12g016940
- Transcript Identifier Sopen12g016940.1
- Gene Type Coding gene
- Location Spenn-ch12 : 42125121-42137883 : positive
Gene Family Information
- ID HOM05D000280
- #Genes/#Species 1564/100
- Phylogenetic origin
- ID ORTHO05D006100
- #Genes/#Species 147/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen12g016940.1
Descriptions
- Description Translation elongation factor EF1A/initiation factor IF2gamma family protein | FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity, zinc ion binding | INVOLVED IN: biological_process unknown | LOCATED IN: intracellular | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal , Translation elongation factor EFTu/EF1A, domain 2 , Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal , Protein synthesis factor, GTP-binding , Zinc finger, RanBP2-type , Translation elongation/initiation factor/Ribosomal, beta-barrel | BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein ., Elongation factor 1-alpha (EF-1-alpha) - Oryza sativa (Rice), Elongation factor, GTP-binding domain
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006414 | ISO | PLAZA Homology (enrichment) | translational elongation | HOM05D000280 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005525 | IEA | InterPro | GTP binding | |
| GO:0003924 | IEA | InterPro | GTPase activity | |
| GO:0003746 | ISO | PLAZA Homology (enrichment) | translation elongation factor activity | HOM05D000280 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036443 | Zinc finger, RanBP2-type superfamily |
| IPR001876 | Zinc finger, RanBP2-type |
| IPR004161 | Translation elongation factor EFTu-like, domain 2 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR009001 | Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal |
| IPR000795 | Translational (tr)-type GTP-binding domain |
| IPR009000 | Translation protein, beta-barrel domain superfamily |
| IPR004160 | Translation elongation factor EFTu/EF1A, C-terminal |
| Mapman id | Description |
|---|---|
| 16.4.1.2.6.4 | RNA processing.RNA surveillance.exosome complex.associated co-factor activities.SUPERKILLER (SKI) regulation complex.associated EXO9 interaction GTPase (SKI7) |
| 17.3.3.1.2 | Protein biosynthesis.mRNA quality control.NGD No-Go Decay.DOM34-HBS1 aberrant mRNA detection complex.GTPase component HBS1/SPL33/SKI7 |