Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G325100 Prunus persica HOM05D003327 ORTHO05D004535 4.8e-173 611.7 469 100.0
Prupe.3G207300 Prunus persica HOM05D003327 ORTHO05D004535 3.6e-96 356.3 469 61.0
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 5.4e-68 262.7 579 46.8
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 3.9e-66 256.5 666 49.4
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 3.3e-65 253.4 665 49.2
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 5.6e-65 252.7 666 48.9
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 7.3e-65 252.3 665 49.0
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 3.6e-64 250.0 680 39.1
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 3.6e-64 250.0 680 42.2
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 3.6e-64 250.0 665 49.0
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 4.8e-64 249.6 665 48.9
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 4.8e-64 249.6 666 48.8
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 9.0e-63 245.4 678 43.5
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 1.2e-62 245.0 669 41.0
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 1.5e-62 244.6 667 48.4
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 2.6e-62 243.8 297 82.8
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 3.4e-62 243.4 666 49.4
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 5.8e-62 242.7 666 48.8
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 9.9e-62 241.9 293 83.6
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 1.7e-61 241.1 300 57.0
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 1.7e-61 241.1 666 48.6
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 2.2e-61 240.7 666 48.5
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 2.9e-61 240.4 676 42.3
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 4.9e-61 239.6 689 38.5
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 8.4e-61 238.8 676 35.1
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 1.9e-60 237.7 293 83.3
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 1.9e-60 237.7 666 48.5
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 2.4e-60 237.3 666 48.3
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 2.4e-60 237.3 679 41.1
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 4.2e-60 236.5 668 47.3
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 1.2e-59 235.0 660 44.4
RcHm_v2.0_Chr6g0275031 Rosa chinensis HOM05D003327 ORTHO05D004535 1.2e-59 235.0 293 82.3
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 1.6e-59 234.6 666 48.0
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 2.1e-59 234.2 307 65.8
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 2.1e-59 234.2 304 54.6
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 3.5e-59 233.4 286 83.6
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 4.6e-59 233.0 629 49.9
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 6.0e-59 232.6 664 48.2
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 7.9e-59 232.3 284 84.5
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 7.9e-59 232.3 668 46.6
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 1.7e-58 231.1 285 82.8
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 3.0e-58 230.3 635 49.6
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 3.9e-58 229.9 665 46.9
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 5.1e-58 229.6 666 46.8
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 5.1e-58 229.6 666 46.4
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 1.5e-57 228.0 298 46.6
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 1.5e-57 228.0 667 45.6
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 2.5e-57 227.3 666 46.5
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 3.3e-57 226.9 286 81.5
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 4.3e-57 226.5 674 43.5
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 4.3e-57 226.5 294 79.6
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 5.6e-57 226.1 667 46.2
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 9.6e-57 225.3 672 42.0
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 1.3e-56 224.9 289 80.6
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 2.8e-56 223.8 294 79.3
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 4.8e-56 223.0 304 64.8
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 4.8e-56 223.0 294 78.2
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 4.8e-56 223.0 666 47.0
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 6.2e-56 222.6 660 46.8
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 1.1e-55 221.9 286 79.0
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 1.1e-55 221.9 666 46.7
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 1.4e-55 221.5 619 46.2
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 1.4e-55 221.5 666 46.7
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 1.8e-55 221.1 291 77.0
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 2.4e-55 220.7 666 43.8
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 5.3e-55 219.5 667 43.2
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 6.9e-55 219.2 599 49.6
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 1.2e-54 218.4 668 46.0
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 1.5e-54 218.0 291 78.0
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 2.6e-54 217.2 466 46.1
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 5.8e-54 216.1 666 44.6
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 5.8e-54 216.1 295 43.1
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 7.6e-54 215.7 282 80.9
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 9.9e-54 215.3 291 79.0
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 1.7e-53 214.5 291 77.3
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 6.4e-53 212.6 291 77.0
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 1.1e-52 211.8 281 79.0
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 1.1e-52 211.8 290 78.3
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 1.1e-52 211.8 290 78.3
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 7.1e-52 209.1 291 75.6
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 7.1e-52 209.1 291 76.6
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 9.3e-52 208.8 279 79.9
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 1.2e-51 208.4 289 76.8
CAN.G248.36 Capsicum annuum HOM05D003327 ORTHO05D004535 1.6e-51 208.0 290 77.6
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 2.1e-51 207.6 296 71.3
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 3.5e-51 206.8 290 77.2
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 4.6e-51 206.5 282 79.1
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 4.6e-51 206.5 290 77.2
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 6.0e-51 206.1 667 46.2
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 6.0e-51 206.1 669 45.7
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 1.0e-50 205.3 282 78.7
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 1.3e-50 204.9 129 73.6
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 1.3e-50 204.9 291 75.3
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 1.3e-50 204.9 291 75.3
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 1.8e-50 204.5 666 44.9
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 2.3e-50 204.1 291 74.9
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 3.0e-50 203.8 291 74.9
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 3.0e-50 203.8 291 74.9
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 3.0e-50 203.8 291 74.9
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 3.0e-50 203.8 124 75.8
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 1.9e-49 201.1 128 71.9
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 2.1e-48 197.6 662 38.7
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 2.1e-48 197.6 658 44.5
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 2.1e-48 197.6 120 73.3
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 2.1e-48 197.6 296 48.6
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 2.8e-48 197.2 129 69.8
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 8.1e-48 195.7 666 45.6
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 4.0e-47 193.4 287 55.7
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 4.0e-47 193.4 663 45.6
BcaC01g06678 Brassica carinata HOM05D003327 ORTHO05D004535 1.5e-46 191.4 291 75.3
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 1.5e-46 191.4 282 76.6
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 1.0e-45 188.7 662 43.8
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 1.0e-45 188.7 663 41.0
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 4.9e-45 186.4 615 46.0
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 8.4e-45 185.7 479 33.4
Lj1g0006616 Lotus japonicus HOM05D003327 ORTHO05D004535 9.3e-44 182.2 282 40.4
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 2.7e-43 180.6 290 72.8
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 4.6e-43 179.9 124 62.1
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 5.1e-42 176.4 111 72.1
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 7.4e-41 172.6 113 67.3
C03p36760 Brassica napus HOM05D003327 ORTHO05D004535 9.6e-41 172.2 282 75.2
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 9.6e-41 172.2 662 45.2
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.3e-40 171.8 289 71.3
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 1.6e-40 171.4 668 41.5
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 2.1e-40 171.0 128 57.8
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 4.8e-40 169.9 293 72.7
C03p36710 Brassica napus HOM05D003327 ORTHO05D004535 1.8e-39 167.9 426 54.2
BolC3t15985H Brassica oleracea HOM05D003327 ORTHO05D004535 1.8e-39 167.9 426 54.2
Thecc.05G055100 Theobroma cacao HOM05D003327 ORTHO05D004535 1.8e-39 167.9 101 73.3
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 1.2e-38 165.2 277 73.6
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 5.8e-38 162.9 279 51.6
TPR.G36382 Trifolium pratense HOM05D003327 ORTHO05D004535 5.8e-38 162.9 106 67.9
BraA03t12222Z Brassica rapa HOM05D003327 ORTHO05D004535 1.3e-37 161.8 120 60.8
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 8.4e-37 159.1 279 50.9
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 8.4e-37 159.1 528 36.6
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 1.1e-36 158.7 280 50.4
A03p30430 Brassica napus HOM05D003327 ORTHO05D004535 3.2e-36 157.1 115 60.9
Nn2g15288 Nelumbo nucifera HOM05D003327 ORTHO05D004535 1.6e-35 154.8 105 66.7
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 7.9e-35 152.5 129 59.7
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 1.0e-34 152.1 278 50.4
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 2.3e-34 151.0 295 49.5
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 5.1e-34 149.8 278 49.6
BcaC01g06673 Brassica carinata HOM05D003327 ORTHO05D004535 3.1e-31 140.6 100 62.0
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 6.9e-31 139.4 119 58.8
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 4.5e-30 136.7 104 55.8
PRCOL_00002302 Prasinoderma coloniale HOM05D003327 ORTHO05D004535 1.0e-29 135.6 124 48.4
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 3.6e-27 127.1 121 44.6
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 7.4e-25 119.4 592 34.3
RcHm_v2.0_Chr6g0275041 Rosa chinensis HOM05D003327 ORTHO05D004535 2.6e-22 110.9 134 55.2
BcaB01g02538 Brassica carinata HOM05D003327 ORTHO05D004535 2.5e-20 104.4 70 65.7
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 6.1e-19 99.8 107 39.3
BolC3t15990H Brassica oleracea HOM05D003327 ORTHO05D004535 7.9e-19 99.4 282 66.7
ClCG05G006860 Citrullus lanatus HOM05D000023 ORTHO05D000014 2.3e-18 97.8 103 49.5
Ah.08g216420 Amaranthus hybridus HOM05D003327 ORTHO05D004535 2.0e-17 94.7 136 53.7
Rhsim05G0038800 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.3e-16 92.0 111 49.5
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 3.7e-16 90.5 134 54.5
ECA238G3940 Erigeron canadensis HOM05D003327 ORTHO05D004535 3.1e-15 87.4 303 28.7
HanXRQChr01g0023131 Helianthus annuus HOM05D003327 ORTHO05D004535 1.6e-14 85.1 110 59.1
BcaB01g02535 Brassica carinata HOM05D003327 ORTHO05D024129 2.6e-14 84.3 54 79.6
HanXRQChr13g0424841 Helianthus annuus HOM05D003327 ORTHO05D004535 1.3e-13 82.0 128 53.9
EL10Ac9g22810 Beta vulgaris HOM05D003327 ORTHO05D004535 1.1e-12 79.0 70 51.4
HanXRQChr04g0102071 Helianthus annuus HOM05D003327 ORTHO05D004535 1.1e-12 79.0 143 49.7
HanXRQChr13g0424861 Helianthus annuus HOM05D003327 ORTHO05D004535 1.1e-12 79.0 143 49.7
HanXRQChr04g0102061 Helianthus annuus HOM05D003327 ORTHO05D004535 1.5e-12 78.6 128 52.3
HanXRQChr13g0424851 Helianthus annuus HOM05D003327 ORTHO05D004535 1.5e-12 78.6 145 49.7
HanXRQChr00c0158g0572131 Helianthus annuus HOM05D003327 ORTHO05D004535 3.2e-12 77.4 145 49.7
HanXRQChr01g0023151 Helianthus annuus HOM05D003327 ORTHO05D004535 3.2e-12 77.4 96 61.5
Ciclev10027259m.g Citrus clementina HOM05D003327 ORTHO05D024129 4.7e-11 73.6 54 72.2
CsaV3_3G015510 Cucumis sativus L. HOM05D003327 ORTHO05D004535 1.4e-10 72.0 84 44.0
RcHm_v2.0_Chr3g0494641 Rosa chinensis HOM05D003327 ORTHO05D024129 3.7e-08 63.9 54 61.1
Dinv12916 Davidia involucrata HOM05D003327 ORTHO05D004535 1.4e-07 62.0 197 29.9
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 7.0e-07 59.7 38 63.2
RcHm_v2.0_Chr3g0494631 Rosa chinensis HOM05D003327 ORTHO05D004535 7.7e-06 56.2 206 27.2


User provided reference genes

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